Miyakogusa Predicted Gene

Lj5g3v2030840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2030840.1 Non Chatacterized Hit- tr|B9R9K4|B9R9K4_RICCO DNA
binding protein, putative OS=Ricinus communis GN=R,42.96,4e-18,HLH,
helix-loop-helix DNA-binding domain,Helix-loop-helix domain;
HLH,Helix-loop-helix domain; coile,CUFF.56473.1
         (258 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51780.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   111   5e-25
AT4G25400.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   107   7e-24
AT4G25410.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   105   3e-23
AT5G51790.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    99   3e-21
AT1G62975.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    89   3e-18
AT1G12540.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    83   2e-16
AT4G20970.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    47   1e-05

>AT5G51780.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:21034879-21036446 FORWARD
           LENGTH=174
          Length = 174

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 93/153 (60%), Gaps = 12/153 (7%)

Query: 74  KKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNIKELS 133
           +KM+HRE E+QRRQEMA+L+ASLRSLLPLHFIKGKRS SDQ+NE VNYI +LQ+ IKELS
Sbjct: 2   EKMMHRETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELS 61

Query: 134 DKRDELNNLS--NILKKDHASASFTFHQSDG---------CVGIEITSGFREEEGLP-VS 181
            +RD+L  LS  ++L   +           G          VG+EI    R   G P  S
Sbjct: 62  VRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVVVRQCLVGVEIMLSSRCCGGQPRFS 121

Query: 182 KXXXXXXXXXXXVVSCISTKVNGKLLHSMQCEV 214
                       +++ IS+ V+ +L++++Q EV
Sbjct: 122 SVLQVLSEYGLCLLNSISSIVDDRLVYTIQAEV 154


>AT4G25400.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:12981295-12982335 FORWARD
           LENGTH=163
          Length = 163

 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/148 (43%), Positives = 91/148 (61%), Gaps = 12/148 (8%)

Query: 74  KKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNIKELS 133
           +K+VH+EIEK+RRQEMA+L+ASLRSLLPL FI+GKRS SDQ+   VNYI++LQ+NIK+++
Sbjct: 2   EKLVHKEIEKRRRQEMASLYASLRSLLPLEFIQGKRSTSDQVKGAVNYIDYLQRNIKDIN 61

Query: 134 DKRDELNNLSNILKKDHASASFTFHQSDG-------CVGIEITSGFREEEGLPVSKXXXX 186
            KRD+L  LS   +   +S    +++           VGIEI     +    P S     
Sbjct: 62  SKRDDLVLLSG--RSFRSSNEQEWNEISNHVVIRPCLVGIEIVLSILQT---PFSSVLQV 116

Query: 187 XXXXXXXVVSCISTKVNGKLLHSMQCEV 214
                  V+  I + VN +L+H++Q EV
Sbjct: 117 LREHGLYVLGYICSSVNDRLIHTLQAEV 144


>AT4G25410.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:12985772-12987149 FORWARD
           LENGTH=230
          Length = 230

 Score =  105 bits (262), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 22/176 (12%)

Query: 78  HREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNIKELSDKRD 137
           HR+IE+QRRQEMATL A+LR+ LPL +IKGKR++SD +N  VN+I   +  IKELS +RD
Sbjct: 47  HRDIERQRRQEMATLFATLRTHLPLKYIKGKRAVSDHVNGAVNFIKDTEARIKELSARRD 106

Query: 138 ELN---------------NLSNILKKDHASASFTFHQSDGCVGIE--ITSGFREEEGLPV 180
           EL+                 S++ K + A+     H S    G+E  ++S     E LP+
Sbjct: 107 ELSRETGQGYKSNPDPGKTGSDVGKSEPATVMVQPHVS----GLEVVVSSNSSGPEALPL 162

Query: 181 SKXXXXXXXXXXXVVSCISTKVNGKLLHSMQCEVWRSRECYHFVFLFYKSYSNIFM 236
           SK           V+S  +T+VN +L+H++Q EV  S  C   ++L  K   ++ +
Sbjct: 163 SKVLETIQEKGLEVMSSFTTRVNDRLMHTIQVEV-NSFGCIDLLWLQQKLVEDLIL 217


>AT5G51790.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:21039762-21040594 FORWARD
           LENGTH=204
          Length = 204

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 18/182 (9%)

Query: 69  EEFKKKKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKN 128
           E  K+KK++HR IE+QRRQEMA L ASLRS LPL +IKGKR++SD +N  V++I   Q  
Sbjct: 22  ETKKEKKLLHRNIERQRRQEMAILFASLRSQLPLKYIKGKRAMSDHVNGAVSFIKDTQTR 81

Query: 129 IKELSDKRDEL----NNLSNILKKDHASASFTFHQS----DGCV-GIEI-----TSGFRE 174
           IK+LS +RDEL     + +++      S S     +      CV G E+      SG   
Sbjct: 82  IKDLSARRDELKREIGDPTSLTGSGSGSGSSRSEPASVMVQPCVSGFEVVVSSLASGL-- 139

Query: 175 EEGLPVSKXXXXXXXXXXXVVSCISTKVNGKLLHSMQCEVWRSRECYHFVFLFYKSYSNI 234
            E  P+S+           V+S ++ +VN +L++++Q EV  S +C+   +L  K    +
Sbjct: 140 -EAWPLSRVLEVLHGQGLEVISSLTARVNERLMYTIQVEV-NSFDCFDLAWLQQKLIEQL 197

Query: 235 FM 236
            +
Sbjct: 198 VL 199


>AT1G62975.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:23328901-23330522 FORWARD
           LENGTH=259
          Length = 259

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 45  KLSSGRTKRILYHSTAGTTHAN-NSEEFKKKKMVHREIEKQRRQEMATLHASLRSLLPLH 103
           K+     KR L   T G   AN N ++ + KKM HR+IE+QRRQE+++L   LR+LLP  
Sbjct: 44  KIGGSNKKRSLCDITYGANEANKNDDDRESKKMKHRDIERQRRQEVSSLFKRLRTLLPFQ 103

Query: 104 FIKGKRSLSDQMNEVVNYINHLQKNIKELSDKRDELNNLSNILKKDHAS 152
           +I+GKRS SD + + VNYI  LQ  IKEL++KR+ +  + +     H++
Sbjct: 104 YIQGKRSTSDHIVQAVNYIKDLQIKIKELNEKRNRVKKVISATTTTHSA 152


>AT1G12540.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:4272960-4273980 FORWARD
           LENGTH=257
          Length = 257

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 86/170 (50%), Gaps = 18/170 (10%)

Query: 69  EEFKKKKMVHREIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKN 128
           +E K K+  H+E+E+QRRQE  +L   LR LLP  +IKGKRS +D + E VNYI  LQK 
Sbjct: 70  DEPKNKRAKHKELERQRRQENTSLFKILRYLLPSQYIKGKRSSADHVLEAVNYIKDLQKK 129

Query: 129 IKELSDKRDELN-NLSNILKKDHASASFTFHQSDGCVG----------------IEITSG 171
           IKE+S+KRD +  ++++   +   S       +  CVG                I ++  
Sbjct: 130 IKEVSEKRDRIKRSITHPSSRGEFSIRSLASSTCSCVGDTNIAVVVRPCLIGLEIVVSCC 189

Query: 172 FREEEGLPVSKXXXXXXXXXXXVVSCISTKVNGKLLHSMQCEVWRSRECY 221
            R E  L  S            +VSCIST+++   +H++  EV    E Y
Sbjct: 190 NRHESCLS-SVLQLLAQEQCFNIVSCISTRLHQGFIHTIASEVEEGIEVY 238


>AT4G20970.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:11215259-11216212 FORWARD
           LENGTH=190
          Length = 190

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 79  REIEKQRRQEMATLHASLRSLLPLHFIKGKRSLSDQMNEVVNYINHLQKNIKELSDKRDE 138
           + +EK RR +M +L++ L SLLP H      +L DQ++E  NYI  LQ N+++   KR+ 
Sbjct: 17  KTVEKNRRMQMKSLYSELISLLPHHSSTEPLTLPDQLDEAANYIKKLQVNVEK---KRER 73

Query: 139 LNNL 142
             NL
Sbjct: 74  KRNL 77