Miyakogusa Predicted Gene

Lj5g3v2028380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2028380.1 Non Chatacterized Hit- tr|F6H6C7|F6H6C7_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,41.35,1e-16,C2H2 and C2HC zinc fingers,NULL; seg,NULL; zinc
finger,Zinc finger, C2H2-like; ZINC_FINGER_C2H2_1,Zi,CUFF.56428.1
         (163 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72050.2 | Symbols: TFIIIA | transcription factor IIIA | chr1...   180   5e-46
AT1G72050.1 | Symbols: TFIIIA | transcription factor IIIA | chr1...   178   1e-45

>AT1G72050.2 | Symbols: TFIIIA | transcription factor IIIA |
           chr1:27115082-27117228 FORWARD LENGTH=412
          Length = 412

 Score =  180 bits (456), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 86/149 (57%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 1   MKHFTNAQCLRNHVKSCHQYVTCDTCGSKQLKKNIKRHLRAHEAGSSSEVFRCEFQGCDC 60
           MK+FTN +CL++H++SCHQ++ C+ CGSK LKKNIKRHLR H+  SS    +CE +GC  
Sbjct: 255 MKYFTNEECLKSHIRSCHQHINCEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSS 314

Query: 61  TFSSKPNLRTHEKAVHLKEKPFVCGFPDCGMRFAYKHVRDNHEQTGKHVFTLGDFEEADR 120
           TFS   NL+ H KAVH   +PFVCGFP CGMRFAYKHVR+ HE +G HV+T GDF E D 
Sbjct: 315 TFSKASNLQKHMKAVHDDIRPFVCGFPGCGMRFAYKHVRNKHENSGYHVYTCGDFVETDE 374

Query: 121 QFXXXXXXXXXXKRVCPTVEMLVRKRVTP 149
            F          K+V  T EMLVRKRV P
Sbjct: 375 DFTSRPRGGLKRKQV--TAEMLVRKRVMP 401


>AT1G72050.1 | Symbols: TFIIIA | transcription factor IIIA |
           chr1:27115808-27117228 FORWARD LENGTH=324
          Length = 324

 Score =  178 bits (452), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 86/149 (57%), Positives = 104/149 (69%), Gaps = 2/149 (1%)

Query: 1   MKHFTNAQCLRNHVKSCHQYVTCDTCGSKQLKKNIKRHLRAHEAGSSSEVFRCEFQGCDC 60
           MK+FTN +CL++H++SCHQ++ C+ CGSK LKKNIKRHLR H+  SS    +CE +GC  
Sbjct: 167 MKYFTNEECLKSHIRSCHQHINCEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSS 226

Query: 61  TFSSKPNLRTHEKAVHLKEKPFVCGFPDCGMRFAYKHVRDNHEQTGKHVFTLGDFEEADR 120
           TFS   NL+ H KAVH   +PFVCGFP CGMRFAYKHVR+ HE +G HV+T GDF E D 
Sbjct: 227 TFSKASNLQKHMKAVHDDIRPFVCGFPGCGMRFAYKHVRNKHENSGYHVYTCGDFVETDE 286

Query: 121 QFXXXXXXXXXXKRVCPTVEMLVRKRVTP 149
            F          K+V  T EMLVRKRV P
Sbjct: 287 DFTSRPRGGLKRKQV--TAEMLVRKRVMP 313