Miyakogusa Predicted Gene

Lj5g3v2013930.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2013930.1 Non Chatacterized Hit- tr|K4AUE7|K4AUE7_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,40.8,4e-17,PROTEIN F12F6.8, PARTIALLY CONFIRMED BY TRANSCRIPT
EVIDENCE,NULL; F-BOX/LEUCINE RICH REPEAT PROTEIN,,CUFF.56495.1
         (166 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48880.2 | Symbols:  | RNI-like superfamily protein | chr3:18...   212   9e-56
AT3G48880.1 | Symbols:  | RNI-like superfamily protein | chr3:18...   212   9e-56
AT4G11580.1 | Symbols:  | RNI-like superfamily protein | chr4:70...    58   3e-09

>AT3G48880.2 | Symbols:  | RNI-like superfamily protein |
           chr3:18127873-18129008 FORWARD LENGTH=309
          Length = 309

 Score =  212 bits (540), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 105/168 (62%), Positives = 130/168 (77%), Gaps = 2/168 (1%)

Query: 1   MCKAIRGWKELESMTMPTIANPPYLLDEISTHCKNFSELKIMGPCDIVFASSLAAFLPKL 60
           +CKAIR WK+LES+TMP+IANPPYLL EI+ +CKNF ELKIMGP ++ FA++L   LP +
Sbjct: 142 ICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELKIMGPFEVFFANTLITCLPNI 201

Query: 61  KVLSLRCSILFKDVLILILDSLQHLEVLNISHCVLVEPLP-PPQHKGIIREIDQTIRQKA 119
           K LS+RCS + ++ L+ ILD L  LEVLNISH  LVE     PQ K I+RE+D+TI +K 
Sbjct: 202 KTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYSGWQPQQKVIVRELDKTIMEKT 261

Query: 120 SRLRSFITCMD-DSCVMCQRTRTDEGLVRWYKYEEGLWKTDEVRSLAL 166
           +RL+ F+TCMD  +CVMCQRT  DEG+VRWYKYEEG WK DEV SL L
Sbjct: 262 ARLKKFLTCMDHKTCVMCQRTENDEGIVRWYKYEEGDWKVDEVSSLHL 309


>AT3G48880.1 | Symbols:  | RNI-like superfamily protein |
           chr3:18127873-18129008 FORWARD LENGTH=309
          Length = 309

 Score =  212 bits (540), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 105/168 (62%), Positives = 130/168 (77%), Gaps = 2/168 (1%)

Query: 1   MCKAIRGWKELESMTMPTIANPPYLLDEISTHCKNFSELKIMGPCDIVFASSLAAFLPKL 60
           +CKAIR WK+LES+TMP+IANPPYLL EI+ +CKNF ELKIMGP ++ FA++L   LP +
Sbjct: 142 ICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELKIMGPFEVFFANTLITCLPNI 201

Query: 61  KVLSLRCSILFKDVLILILDSLQHLEVLNISHCVLVEPLP-PPQHKGIIREIDQTIRQKA 119
           K LS+RCS + ++ L+ ILD L  LEVLNISH  LVE     PQ K I+RE+D+TI +K 
Sbjct: 202 KTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYSGWQPQQKVIVRELDKTIMEKT 261

Query: 120 SRLRSFITCMD-DSCVMCQRTRTDEGLVRWYKYEEGLWKTDEVRSLAL 166
           +RL+ F+TCMD  +CVMCQRT  DEG+VRWYKYEEG WK DEV SL L
Sbjct: 262 ARLKKFLTCMDHKTCVMCQRTENDEGIVRWYKYEEGDWKVDEVSSLHL 309


>AT4G11580.1 | Symbols:  | RNI-like superfamily protein |
           chr4:7006648-7007738 REVERSE LENGTH=333
          Length = 333

 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 13/166 (7%)

Query: 4   AIRGWKELESMTMPTIANPPYLLD--EISTHCKNFSELKIMGPCDIVFASSLAAFLPKLK 61
           A   WK L+++ +    +     D   +   C N + LK +G  +   +  + ++L  LK
Sbjct: 178 AFSQWKNLKTLIIAHEHSFSGRFDFKAVGESCSNLTNLKYLGRLEEYTSREIVSYLHSLK 237

Query: 62  VLSLRCSILFKDVLILILDSLQHLEVLNISHCVLVEPLPPPQHKGIIREIDQTIRQKAS- 120
            LSLRC ++    +   +  L +L +LN+SHC      P      I + ID  +   A+ 
Sbjct: 238 RLSLRCFLVSSIAVYRFITGLPNLTILNVSHC----KNPYDYFLPIAKSIDNYVITAATQ 293

Query: 121 RLRSFITCMDDSCVMCQRTRTDEGLVRWYKYEEGLWKTDEVRSLAL 166
           +L  FITC  D C++C + R    L     Y   +W+ DE++ L  
Sbjct: 294 KLEKFITCPHD-CMIC-KDRCRYSL----SYLAEVWRNDEIKELEF 333