Miyakogusa Predicted Gene
- Lj5g3v2013910.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v2013910.1 CUFF.56390.1
(1098 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch re... 1233 0.0
AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-91293... 285 1e-76
AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | c... 285 1e-76
AT3G18524.1 | Symbols: MSH2, ATMSH2 | MUTS homolog 2 | chr3:6368... 195 2e-49
AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | c... 155 2e-37
AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 | chr4... 152 1e-36
AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:71... 143 5e-34
AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, type... 92 2e-18
AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein ho... 88 3e-17
AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, type... 77 5e-14
AT1G65070.1 | Symbols: | DNA mismatch repair protein MutS, type... 77 6e-14
>AT4G25540.1 | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch repair
protein MSH3 | chr4:13042700-13048115 REVERSE LENGTH=1081
Length = 1081
Score = 1233 bits (3189), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/1100 (59%), Positives = 786/1100 (71%), Gaps = 43/1100 (3%)
Query: 1 MGKQKQQVISRFFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXISATVTFSPAKRRLTSQX 60
MGKQKQQ ISRFFA ISATV+FSP+KR+L S
Sbjct: 1 MGKQKQQTISRFFAPKPKSPTHEPNPVAESSTPPPK------ISATVSFSPSKRKLLSDH 54
Query: 61 XXXXXXXXXXXXXXXXHN-HSPSLHQRFLQKLLEPSSHPSTSDPQPHSSFKSVKYTPLEQ 119
+ P+LHQRFLQ+ LEPS P P+ SS KYTPLEQ
Sbjct: 55 LAAASPKKPKLSPHTQNPVPDPNLHQRFLQRFLEPS--PEEYVPETSSS---RKYTPLEQ 109
Query: 120 QVVELKAKHPDVLLMVEVGYKYRFFGEDAENAARVLGIYAHMDHNFLTASIPTFRLNVHV 179
QVVELK+K+PDV+LMVEVGY+YRFFGEDAE AARVLGIYAHMDHNF+TAS+PTFRLN HV
Sbjct: 110 QVVELKSKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIYAHMDHNFMTASVPTFRLNFHV 169
Query: 180 RRLVSAGYKVGVVKQTETAAIKAHGLNKSGPFCRGLSALYTKATLEAAKDLGGDEEGCGA 239
RRLV+AGYK+GVVKQTETAAIK+HG N++GPF RGLSALYTKATLEAA+D+ G G
Sbjct: 170 RRLVNAGYKIGVVKQTETAAIKSHGANRTGPFFRGLSALYTKATLEAAEDISGGCGGEEG 229
Query: 240 V---SNYLLCVVEKSILGERSNCGVEGGFDVRVGIVAVEISTGDVVYGEFNDNFMRSELE 296
SN+L+CVV++ + E CG+E FDVRVG+V VEISTG+VVY EFNDNFMRS LE
Sbjct: 230 FGSQSNFLVCVVDERVKSETLGCGIEMSFDVRVGVVGVEISTGEVVYEEFNDNFMRSGLE 289
Query: 297 AVLVSLSPAELLLGDPLSRQTEKLLLDFAGPASNVRVERASRDCFTGGGALAEVLTLYEN 356
AV++SLSPAELLLG PLS+QTEK L+ AGP SNVRVERAS DCF+ G A+ EV++L E
Sbjct: 290 AVILSLSPAELLLGQPLSQQTEKFLVAHAGPTSNVRVERASLDCFSNGNAVDEVISLCEK 349
Query: 357 MCVDSPSHSMQSN-DLNEQSNQQLVVKEVMNMPDLAVQALALTAHHLKGFSFERILCSGA 415
+ + + + E+ L V +MNMP L VQALALT HLK F FERIL GA
Sbjct: 350 ISAGNLEDDKEMKLEAAEKGMSCLTVHTIMNMPHLTVQALALTFCHLKQFGFERILYQGA 409
Query: 416 SLRPFVTKTEMILSANALQQLEVLQNKIDGSESGSLLQIMNHTLTIFGSRLLRHWVSHPL 475
S R + TEM LSAN LQQLEV++N DGSESGSL MNHTLT++GSRLLRHWV+HPL
Sbjct: 410 SFRSLSSNTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPL 469
Query: 476 CDQTLISARLDAVCEIAESMGSFKGKKLG--CFEEEPDVSIVQPELAYVLSLVLTALSRA 533
CD+ LISARLDAV EI+ MGS +L EE + +IV PE VLS VLTA+SR+
Sbjct: 470 CDRNLISARLDAVSEISACMGSHSSSQLSSELVEEGSERAIVSPEFYLVLSSVLTAMSRS 529
Query: 534 PDIQRGITRIFHCTATPSEFIAVVQAILSAGKRLQQLKIGEEDNNK------LCSHLLKK 587
DIQRGITRIFH TA +EFIAV++AIL AGK++Q+L I ++ + + S LL+K
Sbjct: 530 SDIQRGITRIFHRTAKATEFIAVMEAILLAGKQIQRLGIKQDSEMRSMQSATVRSTLLRK 589
Query: 588 LILTASSASVIGNAAKLLSSLDKDSADQGDIPNLIIASEGRFPEVIRARKDFQMAVEQLD 647
LI SS V+ NA KLLS+L+K++A +GD+ +++I S +FPE+ AR+ + E+LD
Sbjct: 590 LISVISSPVVVDNAGKLLSALNKEAAVRGDLLDILITSSDQFPELAEARQAVLVIREKLD 649
Query: 648 SLISLYRKRLGIRNLEFLSVSGATHLIELSTDVRVPSNWVKVNSTKKTIRYHPPEVVTAL 707
S I+ +RK+L IRNLEFL VSG THLIEL D +VP NWVKVNSTKKTIRYHPPE+V L
Sbjct: 650 SSIASFRKKLAIRNLEFLQVSGITHLIELPVDSKVPMNWVKVNSTKKTIRYHPPEIVAGL 709
Query: 708 DGLSLAKEELTIACRAAWDSFLRDFSKHYAEFXXXXXXXXXXDCLHSLAILSRNKSYARP 767
D L+LA E L I RA+WDSFL+ FS++Y +F DCLHSL+ LSRNK+Y RP
Sbjct: 710 DELALATEHLAIVNRASWDSFLKSFSRYYTDFKAAVQALAALDCLHSLSTLSRNKNYVRP 769
Query: 768 VFVDDYEPVQIQICSGRHPVLETTLQDNFVPNDTNMHADREYCQIVTGPNMGGKSCYVRQ 827
FVDD EPV+I I SGRHPVLET LQDNFVPNDT +HA+ EYCQI+TGPNMGGKSCY+RQ
Sbjct: 770 EFVDDCEPVEINIQSGRHPVLETILQDNFVPNDTILHAEGEYCQIITGPNMGGKSCYIRQ 829
Query: 828 VALIAVMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHSCTE 887
VALI++MAQVGSFVPAS AKLHVLDG++TRMGASDSIQ GRSTFLEELSE SHI+ +C+
Sbjct: 830 VALISIMAQVGSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFLEELSEASHIIRTCSS 889
Query: 888 RSLVIIDELGRGTSTHDGMAIAYATLHYLLKQKKSMALFVTHYPKIASLVAEFPGSVAAY 947
RSLVI+DELGRGTSTHDG+AIAYATL +LL +K+ + LFVTHYP+IA + FPGSV Y
Sbjct: 890 RSLVILDELGRGTSTHDGVAIAYATLQHLLAEKRCLVLFVTHYPEIAEISNGFPGSVGTY 949
Query: 948 HVSHLTSHDNASKNSNLDREDITYLYKLVPGVSERSFGFKVAQLAQLPPLCISRAIAMAF 1007
HVS+LT + + D +D+TYLYKLV G+ RSFGFKVAQLAQ+PP CI RAI+MA
Sbjct: 950 HVSYLTLQKD---KGSYDHDDVTYLYKLVRGLCSRSFGFKVAQLAQIPPSCIRRAISMAA 1006
Query: 1008 KLEALVNSRVHSRSRKELLLDAPMIDQEQESRELMVQPNDCALQDFGRAYKEFSSNLKSA 1067
KLEA V +R + + P +E E + A + ++LK A
Sbjct: 1007 KLEAEVRAR-----ERNTRMGEPEGHEEPRGAEESIS-----------ALGDLFADLKFA 1050
Query: 1068 ILDDDLAKSFQLLENARSIA 1087
+ ++D K+F+ L++A IA
Sbjct: 1051 LSEEDPWKAFEFLKHAWKIA 1070
>AT4G02070.2 | Symbols: MSH6 | MUTS homolog 6 | chr4:906079-912930
FORWARD LENGTH=1321
Length = 1321
Score = 285 bits (730), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 287/972 (29%), Positives = 452/972 (46%), Gaps = 108/972 (11%)
Query: 113 KYTPLEQQVVELKAKHPDVLLMVEVGYKYRFFGEDAENAARVLGIYAHMDHNFLTASIPT 172
K T ++Q E KAKH D ++ ++G Y F DA A+ L I +M P
Sbjct: 375 KLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDI-QYMKGEQPHCGFPE 433
Query: 173 FRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGLNKSGP----FCRGLSALYTKATLEAAK 228
+V++ +LV GY+V VV+QTET ++G R + A+ TK TL +
Sbjct: 434 KNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKREVCAVVTKGTLTDGE 493
Query: 229 DLGGDEEGCGAVSNYLLCVVEKSILGER-SNCGVEGGFDVRVGIVAVEISTGDVVYGEFN 287
L + + ++YL+ + E GE +N E F G+ V+++T ++ G+F
Sbjct: 494 MLLTNPD-----ASYLMALTEG---GESLTNPTAEHNF----GVCLVDVATQKIILGQFK 541
Query: 288 DNFMRSELEAVLVSLSPAELLL-GDPLSRQTEKLLL-DFAGPASNVRVERASRDCFTGGG 345
D+ S L +L + P E++ LS TE+ ++ P N V + + +
Sbjct: 542 DDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLS--EFWDSEK 599
Query: 346 ALAEVLTLYENM-CVDSPSHSMQSNDLNEQSNQQLVVKEVMNMPD----LAVQALALTAH 400
+ EV +Y+ + C S ++S + L + S+ + + D LA+ AL +
Sbjct: 600 TIYEVGIIYKRINCQPSSAYSSEGKILGDGSSFLPKMLSELATEDKNGSLALSALGGAIY 659
Query: 401 HLKGFSFERILCSGASLR--PFVT------KTEMILSANALQQLEVLQNKIDGSESGSLL 452
+L+ + L A P+ K M+L A AL+ LE+ +N +G SG+L
Sbjct: 660 YLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGYSGTLY 719
Query: 453 QIMNHTLTIFGSRLLRHWVSHPLCDQTLISARLDAVCEIAESMGSFKGKKLGCFEEEPDV 512
+N +T G RLL+ W++ PL + LI R DAV
Sbjct: 720 AQLNQCITASGKRLLKTWLARPLYNTELIKERQDAV------------------------ 755
Query: 513 SIVQPE-LAYVLSLVLTALSRAPDIQRGITRIFHCT-ATPSEFIAVVQAILSAGKRLQQL 570
+I++ E L Y L +LSR PD++R I R+F A+ VV +A K++Q+
Sbjct: 756 AILRGENLPYSLEF-RKSLSRLPDMERLIARMFSSIEASGRNGDKVVLYEDTAKKQVQEF 814
Query: 571 KI---GEEDNNKLCSHL-----------LKKLILTASSASVIGNAAKLLSSLDKDSADQG 616
G E + CS L L L+ S I ++ K KD+ D
Sbjct: 815 ISTLRGCETMAEACSSLRAILKHDTSRRLLHLLTPGQSLPNISSSIKYF----KDAFDWV 870
Query: 617 DIPN--LIIASEGRFPEVIRARKDFQMAVEQLDSLISLYRKRLGIRNLEFLSVSGATHLI 674
+ N +I EG E A K + L + RK LG ++ +++V +L+
Sbjct: 871 EAHNSGRVIPHEGADEEYDCACKTVEEFESSLKKHLKEQRKLLGDASINYVTVGKDEYLL 930
Query: 675 EL--STDVRVPSNWVKVNSTKKTIRYHPPEVVTALDGLSLAKEELTIACRAAWDSFLRDF 732
E+ S VP ++ +S K RY P + L LS AK E A ++ + F
Sbjct: 931 EVPESLSGSVPHDYELCSSKKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRF 990
Query: 733 SKHYAEFXXXXXXXXXXDCLHSLAILSRNKSY----ARPVF---VDDYEPVQIQICSGRH 785
+H ++ D L SLA S SY RPV D P + H
Sbjct: 991 CEHQEKWRQLVSATAELDVLISLAFAS--DSYEGVRCRPVISGSTSDGVP-HLSATGLGH 1047
Query: 786 PVL--ETTLQDNFVPNDTNMH-ADREYCQIVTGPNMGGKSCYVRQVALIAVMAQVGSFVP 842
PVL ++ + +FVPN+ + A++ ++TGPNMGGKS +RQV L ++AQ+G+ VP
Sbjct: 1048 PVLRGDSLGRGSFVPNNVKIGGAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVP 1107
Query: 843 ASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHSCTERSLVIIDELGRGTST 902
A + ++ +D I RMGA D I G+STFL ELSET+ +L S T SLV++DELGRGT+T
Sbjct: 1108 AETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTAT 1167
Query: 903 HDGMAIAYATLHYLLKQKKSMALFVTHYPKIASLVAEFPGSVAAYHVSHLTSHDNASKNS 962
DG AIA + L + +++ + F THY +++ P V+ H++
Sbjct: 1168 SDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNP-KVSLCHMACQIGEGIGGV-- 1224
Query: 963 NLDREDITYLYKLVPGVSERSFGFKVAQLAQLPPLCISRAIAMAFKLEALVNSRVHSRSR 1022
E++T+LY+L PG +S+G VA+LA LP + RA+ + + EAL + H ++
Sbjct: 1225 ----EEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYG-KNHRKTD 1279
Query: 1023 KELLLDAPMIDQ 1034
+L A MI Q
Sbjct: 1280 HKL---AAMIKQ 1288
>AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 |
chr4:906079-912930 FORWARD LENGTH=1324
Length = 1324
Score = 285 bits (729), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 287/972 (29%), Positives = 452/972 (46%), Gaps = 108/972 (11%)
Query: 113 KYTPLEQQVVELKAKHPDVLLMVEVGYKYRFFGEDAENAARVLGIYAHMDHNFLTASIPT 172
K T ++Q E KAKH D ++ ++G Y F DA A+ L I +M P
Sbjct: 378 KLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDI-QYMKGEQPHCGFPE 436
Query: 173 FRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGLNKSGP----FCRGLSALYTKATLEAAK 228
+V++ +LV GY+V VV+QTET ++G R + A+ TK TL +
Sbjct: 437 KNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKREVCAVVTKGTLTDGE 496
Query: 229 DLGGDEEGCGAVSNYLLCVVEKSILGER-SNCGVEGGFDVRVGIVAVEISTGDVVYGEFN 287
L + + ++YL+ + E GE +N E F G+ V+++T ++ G+F
Sbjct: 497 MLLTNPD-----ASYLMALTEG---GESLTNPTAEHNF----GVCLVDVATQKIILGQFK 544
Query: 288 DNFMRSELEAVLVSLSPAELLL-GDPLSRQTEKLLL-DFAGPASNVRVERASRDCFTGGG 345
D+ S L +L + P E++ LS TE+ ++ P N V + + +
Sbjct: 545 DDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLS--EFWDSEK 602
Query: 346 ALAEVLTLYENM-CVDSPSHSMQSNDLNEQSNQQLVVKEVMNMPD----LAVQALALTAH 400
+ EV +Y+ + C S ++S + L + S+ + + D LA+ AL +
Sbjct: 603 TIYEVGIIYKRINCQPSSAYSSEGKILGDGSSFLPKMLSELATEDKNGSLALSALGGAIY 662
Query: 401 HLKGFSFERILCSGASLR--PFVT------KTEMILSANALQQLEVLQNKIDGSESGSLL 452
+L+ + L A P+ K M+L A AL+ LE+ +N +G SG+L
Sbjct: 663 YLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGYSGTLY 722
Query: 453 QIMNHTLTIFGSRLLRHWVSHPLCDQTLISARLDAVCEIAESMGSFKGKKLGCFEEEPDV 512
+N +T G RLL+ W++ PL + LI R DAV
Sbjct: 723 AQLNQCITASGKRLLKTWLARPLYNTELIKERQDAV------------------------ 758
Query: 513 SIVQPE-LAYVLSLVLTALSRAPDIQRGITRIFHCT-ATPSEFIAVVQAILSAGKRLQQL 570
+I++ E L Y L +LSR PD++R I R+F A+ VV +A K++Q+
Sbjct: 759 AILRGENLPYSLEF-RKSLSRLPDMERLIARMFSSIEASGRNGDKVVLYEDTAKKQVQEF 817
Query: 571 KI---GEEDNNKLCSHL-----------LKKLILTASSASVIGNAAKLLSSLDKDSADQG 616
G E + CS L L L+ S I ++ K KD+ D
Sbjct: 818 ISTLRGCETMAEACSSLRAILKHDTSRRLLHLLTPGQSLPNISSSIKYF----KDAFDWV 873
Query: 617 DIPN--LIIASEGRFPEVIRARKDFQMAVEQLDSLISLYRKRLGIRNLEFLSVSGATHLI 674
+ N +I EG E A K + L + RK LG ++ +++V +L+
Sbjct: 874 EAHNSGRVIPHEGADEEYDCACKTVEEFESSLKKHLKEQRKLLGDASINYVTVGKDEYLL 933
Query: 675 EL--STDVRVPSNWVKVNSTKKTIRYHPPEVVTALDGLSLAKEELTIACRAAWDSFLRDF 732
E+ S VP ++ +S K RY P + L LS AK E A ++ + F
Sbjct: 934 EVPESLSGSVPHDYELCSSKKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRLIGRF 993
Query: 733 SKHYAEFXXXXXXXXXXDCLHSLAILSRNKSY----ARPVF---VDDYEPVQIQICSGRH 785
+H ++ D L SLA S SY RPV D P + H
Sbjct: 994 CEHQEKWRQLVSATAELDVLISLAFAS--DSYEGVRCRPVISGSTSDGVP-HLSATGLGH 1050
Query: 786 PVL--ETTLQDNFVPNDTNMH-ADREYCQIVTGPNMGGKSCYVRQVALIAVMAQVGSFVP 842
PVL ++ + +FVPN+ + A++ ++TGPNMGGKS +RQV L ++AQ+G+ VP
Sbjct: 1051 PVLRGDSLGRGSFVPNNVKIGGAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVP 1110
Query: 843 ASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHSCTERSLVIIDELGRGTST 902
A + ++ +D I RMGA D I G+STFL ELSET+ +L S T SLV++DELGRGT+T
Sbjct: 1111 AETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTAT 1170
Query: 903 HDGMAIAYATLHYLLKQKKSMALFVTHYPKIASLVAEFPGSVAAYHVSHLTSHDNASKNS 962
DG AIA + L + +++ + F THY +++ P V+ H++
Sbjct: 1171 SDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTNP-KVSLCHMACQIGEGIGGV-- 1227
Query: 963 NLDREDITYLYKLVPGVSERSFGFKVAQLAQLPPLCISRAIAMAFKLEALVNSRVHSRSR 1022
E++T+LY+L PG +S+G VA+LA LP + RA+ + + EAL + H ++
Sbjct: 1228 ----EEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYG-KNHRKTD 1282
Query: 1023 KELLLDAPMIDQ 1034
+L A MI Q
Sbjct: 1283 HKL---AAMIKQ 1291
>AT3G18524.1 | Symbols: MSH2, ATMSH2 | MUTS homolog 2 |
chr3:6368151-6372409 REVERSE LENGTH=937
Length = 937
Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/267 (39%), Positives = 159/267 (59%), Gaps = 14/267 (5%)
Query: 750 DCLHSLAILSRN--KSYARPVFVDDYEPVQIQICSGRHPVLETTLQDNFVPNDTNMHADR 807
D L S A L+ + Y RP + + I + RHP +E NF+PND + +
Sbjct: 600 DVLLSFADLAASCPTPYCRPE-ITSSDAGDIVLEGSRHPCVEAQDWVNFIPNDCRLMRGK 658
Query: 808 EYCQIVTGPNMGGKSCYVRQVALIAVMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQQG 867
+ QIVTGPNMGGKS ++RQV +I +MAQVGSFVP A + + D I+ R+GA D +G
Sbjct: 659 SWFQIVTGPNMGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRG 718
Query: 868 RSTFLEELSETSHILHSCTERSLVIIDELGRGTSTHDGMAIAYATLHYLLKQKKSMALFV 927
STF++E+ ET+ IL +++SL+IIDELGRGTST+DG +A+A +L++ K++ LF
Sbjct: 719 VSTFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFA 778
Query: 928 THYPKIASLV---AEFPGSVAAYHVSHLTSH-DNASKNSNLDREDITYLYKLVPGVSERS 983
TH+ ++ +L +E G+ H+++H D S+ +T LYK+ PG ++S
Sbjct: 779 THFHELTALAQANSEVSGNTVGVANFHVSAHIDTESRK-------LTMLYKVEPGACDQS 831
Query: 984 FGFKVAQLAQLPPLCISRAIAMAFKLE 1010
FG VA+ A P ++ A A +LE
Sbjct: 832 FGIHVAEFANFPESVVALAREKAAELE 858
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 44/240 (18%)
Query: 269 VGIVAVEISTGDVVYGEFNDNFMRSELEAVLVSLSPAELLLGDPLSRQTEKLLLDFAGPA 328
+G+ V+++ + EF D+ + LE+ L++L E + PA
Sbjct: 158 IGMAYVDLTRRVLGLAEFLDDSRFTNLESSLIALGAKECIF-----------------PA 200
Query: 329 SNVRVERASRDCFTGGGALAEVLTLYENMCVDSPSHSMQSNDLNEQSNQQLV------VK 382
+ + S +C +L + L M + H + DL+ ++LV V+
Sbjct: 201 ESGK----SNEC----KSLYDSLERCAVMITERKKHEFKGRDLDSDL-KRLVKGNIEPVR 251
Query: 383 EVMNMPDLAVQALALTAHHLKGFSFERILCS-----GASLRPFVTKTEMILSANALQQLE 437
++++ DLA AL SF +L + ++R + M L + A++ L
Sbjct: 252 DLVSGFDLATPALGAL------LSFSELLSNEDNYGNFTIRRYDIGGFMRLDSAAMRALN 305
Query: 438 VLQNKIDGSESGSLLQIMNHTLTI-FGSRLLRHWVSHPLCDQTLISARLDAVCEIAESMG 496
V+++K D +++ SL +MN T T G RLL W+ PL D I RLD V E G
Sbjct: 306 VMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTRLDIVQCFVEEAG 365
>AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 |
chr3:8912418-8918086 REVERSE LENGTH=1109
Length = 1109
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/275 (35%), Positives = 142/275 (51%), Gaps = 20/275 (7%)
Query: 750 DCLHSLAILSR--NKSYARPVFVDDYEPVQ---------IQICSGRHPVLETTLQDNFVP 798
D L S AI + S ARPV + E ++I HP VP
Sbjct: 770 DVLRSFAIAASLSAGSMARPVIFPESEATDQNQKTKGPILKIQGLWHPFAVAADGQLPVP 829
Query: 799 NDTNMHADREYCQ-------IVTGPNMGGKSCYVRQVALIAVMAQVGSFVPASSAKLHVL 851
ND + R ++TGPNMGGKS +R L + AQ+G +VP S ++ ++
Sbjct: 830 NDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLGCYVPCESCEISLV 889
Query: 852 DGIYTRMGASDSIQQGRSTFLEELSETSHILHSCTERSLVIIDELGRGTSTHDGMAIAYA 911
D I+TR+GASD I G STFL E +ET+ +L + T+ SLVI+DELGRGTST DG AIAY+
Sbjct: 890 DTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYS 949
Query: 912 TLHYLLKQKKSMALFVTHYPKIASLVAEFPGSVAAYHVSHLTSHDNASKNSNLDREDITY 971
+L+++ + LF THY + A P V + H++ + + D +D+ +
Sbjct: 950 VFRHLVEKVQCRMLFATHYHPLTKEFASHP-RVTSKHMACAFKSRSDYQPRGCD-QDLVF 1007
Query: 972 LYKLVPGVSERSFGFKVAQLAQLPPLCISRAIAMA 1006
LY+L G S+G +VA +A +P + A A
Sbjct: 1008 LYRLTEGACPESYGLQVALMAGIPNQVVETASGAA 1042
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 109/407 (26%), Positives = 180/407 (44%), Gaps = 57/407 (14%)
Query: 105 PHSSFKSVKYTPLEQQVVELKAKHPDVLLMVEVGYKYRFFGEDAENAARVLGIYAHMDHN 164
P FK K + ++Q +K+++ D++L +VG Y + DAE LG + +D
Sbjct: 260 PPDVFK--KMSASQKQYWSVKSEYMDIVLFFKVGKFYELYELDAE-----LG-HKELDWK 311
Query: 165 FLTASIPTFR--------LNVHVRRLVSAGYKVGVVKQTETA-AIKAHGLNKSGPFCRGL 215
+ + R ++ V++L++ GYKVG ++Q ET+ KA G N P R L
Sbjct: 312 MTMSGVGKCRQVGISESGIDEAVQKLLARGYKVGRIEQLETSDQAKARGANTIIP--RKL 369
Query: 216 SALYTKATLEAAKDLGGDEEGCGAVSNYLLCVVEKSILGERSNCGVEGGFDVRVGIVAVE 275
+ T +T E G + +LL + K I E C GF V+
Sbjct: 370 VQVLTPST--------ASEGNIGPDAVHLLAI--KEIKMELQKCSTVYGF------AFVD 413
Query: 276 ISTGDVVYGEFNDNFMRSELEAVLVSLSPAELLLGDP-LSRQTEKLLLDFAGPASNVRVE 334
+ G +D+ + L A+L+ +SP E+L LSR+ +K L +
Sbjct: 414 CAALRFWVGSISDDASCAALGALLMQVSPKEVLYDSKGLSREAQKALRKYT--------- 464
Query: 335 RASRDCFTGGGA--LAEVLTLYENMCVDSPSHSMQSNDLNEQSNQQL-VVKEVMNMPDLA 391
TG A LA V + + + ++SN + S++ + +N D+A
Sbjct: 465 ------LTGSTAVQLAPVPQVMGDTDAAGVRNIIESNGYFKGSSESWNCAVDGLNECDVA 518
Query: 392 VQALALTAHHLKGFSFERILCSGASLRPFVTKTEMILSANALQQLEVLQNKIDGSESGSL 451
+ AL +HL E +L G V + + + + LE+ N DG SG+L
Sbjct: 519 LSALGELINHLSRLKLEDVLKHGDIFPYQVYRGCLRIDGQTMVNLEIFNNSCDGGPSGTL 578
Query: 452 LQIMNHTLTIFGSRLLRHWVSHPLCDQTLISARLDAVCEI---AESM 495
+ +++ ++ G RLLR+W+ HPL D I+ RLD V E +ESM
Sbjct: 579 YKYLDNCVSPTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESM 625
>AT4G17380.1 | Symbols: MSH4, ATMSH4 | MUTS-like protein 4 |
chr4:9708742-9714068 FORWARD LENGTH=792
Length = 792
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 147/255 (57%), Gaps = 19/255 (7%)
Query: 764 YARPVFVDDYEPVQIQICSGRHPVLETTLQDNFVPNDTNMHADREYCQIVTGPNMGGKSC 823
Y+RP D P+ I +GRHP+LE+ + ++FV N M ++ +V GPNM GKS
Sbjct: 507 YSRPELTDS-GPLAID--AGRHPILES-IHNDFVSNSIFM-SEATNMLVVMGPNMSGKST 561
Query: 824 YVRQVALIAVMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILH 883
Y++QV L+ ++AQ+G +VPA A + V+D I+TRMG D+++ STF+ E+ ET+ I+
Sbjct: 562 YLQQVCLVVILAQIGCYVPARFATIRVVDRIFTRMGTMDNLESNSSTFMTEMRETAFIMQ 621
Query: 884 SCTERSLVIIDELGRGTSTHDGMAIAYATLHYLLKQKKSMALFVTHYPKIASLVAEFPGS 943
+ T RSL+++DELGR TS+ DG+A+A++ YLL K+ +F TH +A L +P +
Sbjct: 622 NVTNRSLIVMDELGRATSSSDGLAMAWSCCEYLLSL-KAYTVFATHMDSLAELATIYP-N 679
Query: 944 VAAYHVSHLTSHDNASKNSNLDREDITYLYKLVPG-VSERSFGFKVAQLAQLPPLCISRA 1002
V H ++ DN + + ++L G + +G +A++A LP I A
Sbjct: 680 VKVLHF-YVDIRDNR----------LDFKFQLRDGTLHVPHYGLLLAEVAGLPSTVIDTA 728
Query: 1003 IAMAFKLEALVNSRV 1017
+ ++ N R+
Sbjct: 729 RIITKRITDKENKRI 743
>AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 |
chr3:7143546-7150811 FORWARD LENGTH=807
Length = 807
Score = 143 bits (361), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 137/254 (53%), Gaps = 11/254 (4%)
Query: 750 DCLHSLAILSRNKSYARPVFVDDYEPVQIQICSGRHPVLETTLQDNFVPNDTNMHADREY 809
DC+ SLA ++ +Y RPV + + I +GRH VL+ D F+PNDT ++ D
Sbjct: 509 DCILSLACVAHQNNYVRPVLTVES---LLDIRNGRH-VLQEMAVDTFIPNDTEIN-DNGR 563
Query: 810 CQIVTGPNMGGKSCYVRQVALIAVMAQVGSFVPASSAKLHVLDGIYTRMGASDSIQQGRS 869
I+TGPN GKS YV+QVALI ++ +GSFVPA +A + + D I+ MG S + +S
Sbjct: 564 IHIITGPNYSGKSIYVKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMG-SKFMTAEQS 622
Query: 870 TFLEELSETSHILHSCTERSLVIIDELGRGTSTHDGMAIAYATL-HYLLKQKKSMALFVT 928
TF+ +L + +L T RSL ++DE G+GT T DG+ + T+ H+ + + T
Sbjct: 623 TFMIDLHQVGMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFATCAEPPRVVVCT 682
Query: 929 HYPKIASLVAEFPGSVAAYHVSHLTSHDNASKNSNLDREDITYLYKLVPGVSERSFGFKV 988
H ++ + ++ + D S N E+I +LY+L+PG + S+G
Sbjct: 683 HLTELLNESCLPVSEKIKFYTMSVLRPDTESAN----MEEIVFLYRLIPGQTLLSYGLHC 738
Query: 989 AQLAQLPPLCISRA 1002
A LA +P + RA
Sbjct: 739 ALLAGVPEEVVKRA 752
>AT5G54090.1 | Symbols: | DNA mismatch repair protein MutS, type 2 |
chr5:21948283-21952550 REVERSE LENGTH=796
Length = 796
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 28/227 (12%)
Query: 812 IVTGPNMGGKSCYVRQVALIAVMAQVGSFVPAS-SAKLHVLDGIYTRMGASDSIQQGRST 870
++TGPN GGK+ ++ V L A+MA+ G +V A+ SA++ D IY +G S+ Q ST
Sbjct: 438 VITGPNTGGKTICLKSVGLAAMMAKSGLYVLATESARIPWFDNIYADIGDEQSLLQSLST 497
Query: 871 FLEELSETSHILHSCTERSLVIIDELGRGTSTHDGMAIAYATLHYLLKQKKSMALFVTHY 930
F L + S IL T RSLV++DE+G GT+ +G A+ A L + + + TH+
Sbjct: 498 FSGHLKQISEILSHSTSRSLVLLDEVGAGTNPLEGAALGMAILESFAESGSLLTMATTHH 557
Query: 931 PKIASLVAEFPGSVAAYHVSHLTSHDNASKNSNLDREDITY--LYKLVPGVSERSFGFKV 988
++ + L ++A +N+ ++ +D+ YK++ GV RS +
Sbjct: 558 GELKT----------------LKYSNSAFENACMEFDDLNLKPTYKILWGVPGRSNAINI 601
Query: 989 AQLAQLPPLCISRAIAMAFKLEALVNSRVHSRSRKELLLDAPMIDQE 1035
A LP I A + A +N E++LD QE
Sbjct: 602 ADRLGLPCDIIESARELYGSASAEIN---------EVILDMERYKQE 639
>AT3G24320.1 | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein homolog
1 | chr3:8823229-8829571 REVERSE LENGTH=1118
Length = 1118
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 104/217 (47%), Gaps = 15/217 (6%)
Query: 797 VPNDTNMH--ADREYCQIVTGPNMGGKSCYVRQVALIAVMAQVGSFVPASSAKLHVLDGI 854
V + T +H D + ++TGPN GGKS +R + A++ G VPA SA + D I
Sbjct: 748 VSSGTAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESACIPHFDSI 807
Query: 855 YTRMGASDSIQQGRSTFLEELSETSHILHSCTERSLVIIDELGRGTSTHDGMAIAYATLH 914
M + DS G+S+F E+SE I+ T RSLV+IDE+ RGT T G IA + +
Sbjct: 808 MLHMKSYDSPVDGKSSFQVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVVE 867
Query: 915 YLLKQKKSMALFVTHYPKIASLVAEFPGSVAAYHVSHLTSHDNASKNSNLDREDITYLYK 974
L + + TH I SL + A ++++ A N++ + +K
Sbjct: 868 S-LDTSGCLGIVSTHLHGIFSL------PLTAKNITY-----KAMGAENVEGQ-TKPTWK 914
Query: 975 LVPGVSERSFGFKVAQLAQLPPLCISRAIAMAFKLEA 1011
L GV S F+ A+ +P I RA A+ + A
Sbjct: 915 LTDGVCRESLAFETAKREGVPESVIQRAEALYLSVYA 951
>AT1G65070.2 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr1:24173047-24176244 REVERSE LENGTH=876
Length = 876
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 96/172 (55%), Gaps = 10/172 (5%)
Query: 778 IQICSGRHPVLETTL------QDNF-VPNDTNMHADREYCQIVTGPNMGGKSCYVRQVAL 830
+ I S +HP+L ++ D F VP D + + + +++GPN GGK+ ++ + L
Sbjct: 359 VDIDSAQHPLLLGSVLGSPNGGDIFPVPVDIKVESSAKVV-VISGPNTGGKTALLKTLGL 417
Query: 831 IAVMAQVGSFVPASSA-KLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHSCTERS 889
+++M++ G ++PA + +L D I +G S++Q STF +S IL +E S
Sbjct: 418 LSLMSKSGMYLPAKNCPRLPWFDLILADIGDPQSLEQSLSTFSGHISRIRQILDIASENS 477
Query: 890 LVIIDELGRGTSTHDGMAIAYATLHYLLKQKKSMALFVTHYPKIASLVAEFP 941
LV++DE+ GT +G+A+A + L Y +K + ++A+ THY ++ L P
Sbjct: 478 LVLLDEICSGTDPSEGVALATSILQY-IKNRVNVAVVSTHYGDLSRLKDNEP 528
>AT1G65070.1 | Symbols: | DNA mismatch repair protein MutS, type 2
| chr1:24173132-24176244 REVERSE LENGTH=857
Length = 857
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 96/172 (55%), Gaps = 10/172 (5%)
Query: 778 IQICSGRHPVLETTL------QDNF-VPNDTNMHADREYCQIVTGPNMGGKSCYVRQVAL 830
+ I S +HP+L ++ D F VP D + + + +++GPN GGK+ ++ + L
Sbjct: 359 VDIDSAQHPLLLGSVLGSPNGGDIFPVPVDIKVESSAKVV-VISGPNTGGKTALLKTLGL 417
Query: 831 IAVMAQVGSFVPASSA-KLHVLDGIYTRMGASDSIQQGRSTFLEELSETSHILHSCTERS 889
+++M++ G ++PA + +L D I +G S++Q STF +S IL +E S
Sbjct: 418 LSLMSKSGMYLPAKNCPRLPWFDLILADIGDPQSLEQSLSTFSGHISRIRQILDIASENS 477
Query: 890 LVIIDELGRGTSTHDGMAIAYATLHYLLKQKKSMALFVTHYPKIASLVAEFP 941
LV++DE+ GT +G+A+A + L Y +K + ++A+ THY ++ L P
Sbjct: 478 LVLLDEICSGTDPSEGVALATSILQY-IKNRVNVAVVSTHYGDLSRLKDNEP 528