Miyakogusa Predicted Gene

Lj5g3v2013640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2013640.1 Non Chatacterized Hit- tr|E0CV37|E0CV37_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,42.31,0.000002,seg,NULL; Retrovirus zinc finger-like domains,Zinc
finger, CCHC-type; zinc finger,Zinc finger, CCHC-,CUFF.56370.1
         (657 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52380.1 | Symbols:  | VASCULAR-RELATED NAC-DOMAIN 6 | chr5:2...    59   1e-08

>AT5G52380.1 | Symbols:  | VASCULAR-RELATED NAC-DOMAIN 6 |
           chr5:21261521-21263061 REVERSE LENGTH=268
          Length = 268

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 584 MASRQHGHKLK-YPSKDVE-----ICFFCGEIGHSLGRCSVSRAGGGLSRFAKCLICHAQ 637
           +  R+ GH LK  P K+ E     +C+ CG+ GHSL  C      GG ++FA C IC  Q
Sbjct: 102 LQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYPMEDGG-TKFASCFICKGQ 160

Query: 638 GHFSYNCTRHGHGLI 652
           GH S NC  + HG+ 
Sbjct: 161 GHISKNCPENKHGIY 175