Miyakogusa Predicted Gene

Lj5g3v2013630.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2013630.1 CUFF.56359.1
         (266 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52380.1 | Symbols:  | VASCULAR-RELATED NAC-DOMAIN 6 | chr5:2...   237   6e-63
AT3G43590.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...    64   1e-10
AT4G36020.1 | Symbols: CSDP1 | cold shock domain protein 1 | chr...    61   6e-10
AT1G75560.2 | Symbols:  | zinc knuckle (CCHC-type) family protei...    48   6e-06
AT1G75560.1 | Symbols:  | zinc knuckle (CCHC-type) family protei...    48   6e-06

>AT5G52380.1 | Symbols:  | VASCULAR-RELATED NAC-DOMAIN 6 |
           chr5:21261521-21263061 REVERSE LENGTH=268
          Length = 268

 Score =  237 bits (605), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 121/251 (48%), Positives = 155/251 (61%), Gaps = 5/251 (1%)

Query: 1   MVSQRQRLARKRFKAENPELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKGVKS-NS 59
           MV+QR+RLA+KR+K  NPEL                                +  ++ +S
Sbjct: 1   MVNQRRRLAQKRYKEANPELFPKAEPTPPKDPNKKKKKKSLFKKKKPGSSTDRPQRTGSS 60

Query: 60  RKHPLRVPGMRPGETCFICKARDHIAKLCPEKAEWEKNKICLRCRRRGHRAQNCPEVKDG 119
            +HPLRVPGM+PGE CFIC ++ HIAKLCPEK+EWE+NKICL+CRRRGH  +NCPE  + 
Sbjct: 61  TRHPLRVPGMKPGEGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNE 120

Query: 120 PKDGKFCYNCGETGHPLSNCPQPLQEGGTKFAECFVCKQRGHLSKNCPQNAHGIYPKGGS 179
             + K CYNCG+TGH LS+CP P+++GGTKFA CF+CK +GH+SKNCP+N HGIYP GG 
Sbjct: 121 SSEKKLCYNCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPENKHGIYPMGGC 180

Query: 180 CKICGGVTHLAKDCPDKGNRGSVAANRPLRISSRTEERPSSHTRFVSGXXXXXXXXXXXI 239
           CK+CG V HL KDCPDK N+ S    +    +SR +  P       SG            
Sbjct: 181 CKVCGSVAHLVKDCPDKFNQESAQPKK----TSRFDATPRGKLTKFSGDDLEDDFTEEPK 236

Query: 240 NSGDKNTSSNS 250
           +S   NTS +S
Sbjct: 237 SSKKINTSDDS 247


>AT3G43590.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr3:15509753-15512255 FORWARD LENGTH=551
          Length = 551

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 9/119 (7%)

Query: 75  CFICKARDHIAKLCPEKAEWEKNKICLRCRRRGHRAQNCPEVKDGPKDGKFCYNCGETGH 134
           CFIC + +H AK C       K   C  C++ GHRA++CP+       G  C  CG+ GH
Sbjct: 191 CFICGSLEHGAKQC------SKGHDCYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGH 244

Query: 135 PLSNCPQPLQEGGTKFAECFVCKQRGHLSKNCPQNAHGIYPKGGSCKICGGVTHLAKDC 193
            +  C     +   K  +C++CK  GHL    P N+        SC  CG + H    C
Sbjct: 245 DMILCKYEYSKEDLKDVQCYICKSFGHLCCVEPGNSLSW---AVSCYRCGQLGHSGLAC 300



 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 53/123 (43%), Gaps = 17/123 (13%)

Query: 82  DHIAKLCPEKAEWEKNKICLRCRRRGHRAQNCPEVKDGPKDGKFCYNCGETGHPLSNCPQ 141
           D + +    K E   + + L+   RG R  + P+          CY+CGE GH   NCP 
Sbjct: 129 DEVERSDEPKTEETASNLVLKKLLRGARYFDPPDA-----GWVSCYSCGEQGHTSFNCPT 183

Query: 142 PLQEGGTKFAECFVCKQRGHLSKNCPQNAHGIYPKGGSCKICGGVTHLAKDCPDKGNRGS 201
           P +    +   CF+C    H +K C         KG  C IC    H AKDCPDK   GS
Sbjct: 184 PTK----RRKPCFICGSLEHGAKQCS--------KGHDCYICKKTGHRAKDCPDKYKNGS 231

Query: 202 VAA 204
             A
Sbjct: 232 KGA 234



 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 66/168 (39%), Gaps = 45/168 (26%)

Query: 72  GETCFICKARDHIAKLCPEKAE-WEKNKICLRCRRRGHRAQNC--PEVKDGPKDGK---- 124
           G  C+ICK   H AK CP+K +   K  +CLRC   GH    C     K+  KD +    
Sbjct: 207 GHDCYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQCYIC 266

Query: 125 -------------------FCYNCGETGHPLSNCPQPLQEGGT-------------KFAE 152
                               CY CG+ GH    C +  +E                + +E
Sbjct: 267 KSFGHLCCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASE 326

Query: 153 CFVCKQRGHLSKNCPQNAHGIYPKGGS-----CKICGGVTHLAKDCPD 195
           C+ C + GH ++ CP N+  I    G      C  C G  H A++CP+
Sbjct: 327 CYRCGEEGHFARECP-NSSSISTSHGRESQTLCYRCNGSGHFARECPN 373


>AT4G36020.1 | Symbols: CSDP1 | cold shock domain protein 1 |
           chr4:17043443-17044342 REVERSE LENGTH=299
          Length = 299

 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 61/147 (41%), Gaps = 25/147 (17%)

Query: 75  CFICKARDHIAKLCPEKAEWEKNKI-------CLRCRRRGHRAQNCPEVKDGPKDGKF-- 125
           C+ C    HI+K C         +        C  C   GH A++C    +G + G    
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161

Query: 126 ----CYNCGETGHPLSNCPQPL-----QEGGTKFAE--CFVCKQRGHLSKNCPQN-AHGI 173
               CY CG+ GH   +C Q       Q G  K     C+ C   GH +++C Q  A G 
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGN 221

Query: 174 YPKGG----SCKICGGVTHLAKDCPDK 196
              GG    +C  CGGV H+A+DC  K
Sbjct: 222 VRSGGGGSGTCYSCGGVGHIARDCATK 248



 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 24/146 (16%)

Query: 75  CFICKARDHIAKLCPEKAEWEK-------NKICLRCRRRGHRAQNCPE--VKDGPKDGKF 125
           C+ C    H A+ C      ++       N  C  C   GH A++C +  V +G + G  
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193

Query: 126 ------CYNCGETGHPLSNCPQPL-----QEGGTKFAECFVCKQRGHLSKNCPQNAHGIY 174
                 CY CG+ GH   +C Q +     + GG     C+ C   GH++++C        
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQ--- 250

Query: 175 PKGGSCKICGGVTHLAKDCPDKGNRG 200
           P  G C  CGG  HLA+DC  +G+ G
Sbjct: 251 PSRG-CYQCGGSGHLARDCDQRGSGG 275



 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 19/137 (13%)

Query: 73  ETCFICKARDHIAKLCPEK---------AEWEKNKICLRCRRRGHRAQNCPE------VK 117
           + C+ C    H+A+ C +K         A    N  C  C   GH A++C +      V+
Sbjct: 164 DGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVR 223

Query: 118 DGPKDGKFCYNCGETGHPLSNCPQPLQEGGTKFAECFVCKQRGHLSKNCPQNAHGIYPKG 177
            G      CY+CG  GH   +C    Q        C+ C   GHL+++C Q   G     
Sbjct: 224 SGGGGSGTCYSCGGVGHIARDCATKRQ----PSRGCYQCGGSGHLARDCDQRGSGGGGND 279

Query: 178 GSCKICGGVTHLAKDCP 194
            +C  CG   H A++C 
Sbjct: 280 NACYKCGKEGHFARECS 296



 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 12/89 (13%)

Query: 126 CYNCGETGHPLSNCPQPL---QEGGTKFAE--CFVCKQRGHLSKNCPQNAHG-----IYP 175
           CYNCG+TGH   +C       Q G TK     C+ C   GH++++C Q + G        
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193

Query: 176 KGGS--CKICGGVTHLAKDCPDKGNRGSV 202
           KGG+  C  CG V H A+DC  K   G+V
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNV 222


>AT1G75560.2 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr1:28371420-28372717 REVERSE LENGTH=257
          Length = 257

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 22/120 (18%)

Query: 75  CFICKARDHIAKLCPEKAEWEKNKICLRCRRRGHRAQNCPEVKDGPKDGKFCYNCGETGH 134
           C+ C+   H+A  C  +       IC  C + GHRA++C        D + C NC + GH
Sbjct: 95  CWNCREPGHVASNCSNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGH 148

Query: 135 PLSNCPQPLQEGGTKFAECFVCKQRGHLSKNCPQNAHGIYPKGGSCKICGGVTHLAKDCP 194
             ++C        T    C  C+  GH++++C  +          C IC    H+A+ CP
Sbjct: 149 LAADC--------TNDKACKNCRTSGHIARDCRNDP--------VCNICSISGHVARHCP 192


>AT1G75560.1 | Symbols:  | zinc knuckle (CCHC-type) family protein |
           chr1:28371420-28372717 REVERSE LENGTH=257
          Length = 257

 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 22/120 (18%)

Query: 75  CFICKARDHIAKLCPEKAEWEKNKICLRCRRRGHRAQNCPEVKDGPKDGKFCYNCGETGH 134
           C+ C+   H+A  C  +       IC  C + GHRA++C        D + C NC + GH
Sbjct: 95  CWNCREPGHVASNCSNEG------ICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGH 148

Query: 135 PLSNCPQPLQEGGTKFAECFVCKQRGHLSKNCPQNAHGIYPKGGSCKICGGVTHLAKDCP 194
             ++C        T    C  C+  GH++++C  +          C IC    H+A+ CP
Sbjct: 149 LAADC--------TNDKACKNCRTSGHIARDCRNDP--------VCNICSISGHVARHCP 192