Miyakogusa Predicted Gene

Lj5g3v2013610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v2013610.1 Non Chatacterized Hit- tr|H9XAS1|H9XAS1_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=C,50.55,1e-18,PAR1,PAR1,CUFF.56357.1
         (198 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52390.1 | Symbols:  | PAR1 protein | chr5:21264281-21265173 ...   213   5e-56
AT3G54040.1 | Symbols:  | PAR1 protein | chr3:20014032-20015299 ...   166   1e-41

>AT5G52390.1 | Symbols:  | PAR1 protein | chr5:21264281-21265173
           REVERSE LENGTH=195
          Length = 195

 Score =  213 bits (543), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 112/199 (56%), Positives = 142/199 (71%), Gaps = 12/199 (6%)

Query: 1   MASNFSLMSLAILALTFSLAVQGTLGG-IECENLSEETCSFAVSSGGKRCVLEKRVKRTG 59
           MA     ++  IL   +S   Q T G  ++CENL E TC+FAVSS GKRCVLEK +KR+G
Sbjct: 1   MALKTVFVAFMILLAIYS---QTTFGDDVKCENLDENTCAFAVSSTGKRCVLEKSMKRSG 57

Query: 60  EEAYTCRTSEIEADKLKDHIETEQCVKACGLDRKSLGISSDSLLESRFTHQLCSPQCYQS 119
            E YTCR+SEIEA+K+ + IE+++C+KACGLDRK+LGISSD+LLES+FTH+LCS +C   
Sbjct: 58  IEVYTCRSSEIEANKVTNIIESDECIKACGLDRKALGISSDALLESQFTHKLCSVKCLNQ 117

Query: 120 CPNVVDLYFNLAAGEGVFLPMLCEAEGGNARRGMAELKSSGIVAPGPVHFVQFLATPPEP 179
           CPNVVDLYFNLAAGEGV+LP LCE++ G +RR M+E++SSGI        +  LA P  P
Sbjct: 118 CPNVVDLYFNLAAGEGVYLPKLCESQEGKSRRAMSEIRSSGIA-------MDTLA-PVGP 169

Query: 180 FNPVEFAAEPAATPSYPPY 198
               E A EPA +    PY
Sbjct: 170 VMLGEIAPEPATSMDNMPY 188


>AT3G54040.1 | Symbols:  | PAR1 protein | chr3:20014032-20015299
           REVERSE LENGTH=183
          Length = 183

 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 111/164 (67%), Gaps = 4/164 (2%)

Query: 4   NFSLMSLAILALTFSLAVQGTLGGIECENLSEETCSFAVSSGGKRCVLEKRVKRTGEEAY 63
           +FS + L I  +  SL        I CENL    CSF++S+ GKRC+LE      GE  +
Sbjct: 2   SFSSLKLPIFLILSSLLHAAIGENIVCENLPTNMCSFSISASGKRCILET-ANVAGE--F 58

Query: 64  TCRTSEIEADKLKDHIETEQCVKACGLDRKSLGISSDSLLESRFTHQLCSPQCYQSCPNV 123
           TCRTS ++ + + +H+ET++CV ACG+DRK++GISSDSL+E+ F  +LCS  C   CPN+
Sbjct: 59  TCRTSAVDVEGIVNHVETDECVSACGVDRKTVGISSDSLMEAGFAAKLCSSACLDYCPNI 118

Query: 124 VDLYFNLAAGEGVFLPMLCEAEGGNARRGMAELKSSGIVAPGPV 167
           +DLYFNLAAGEG FLP LC+A+  N +R M E  SSG  APGPV
Sbjct: 119 LDLYFNLAAGEGAFLPDLCDAQRMNPQRSMMEFISSG-AAPGPV 161