Miyakogusa Predicted Gene

Lj5g3v1999150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1999150.1 Non Chatacterized Hit- tr|I1H1L1|I1H1L1_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,43.87,9e-19,seg,NULL; coiled-coil,NULL,CUFF.56328.1
         (252 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49055.1 | Symbols:  | unknown protein; EXPRESSED IN: cotyled...    52   4e-07

>AT3G49055.1 | Symbols:  | unknown protein; EXPRESSED IN: cotyledon;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT1G24560.1); Has 52205 Blast hits to
           29376 proteins in 1994 species: Archae - 873; Bacteria -
           6150; Metazoa - 27099; Fungi - 3784; Plants - 3062;
           Viruses - 130; Other Eukaryotes - 11107 (source: NCBI
           BLink). | chr3:18185166-18186968 REVERSE LENGTH=480
          Length = 480

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 139 NRDINNLLRVSLLEKEALEKRIK-GHDHKRMPLLQFAEFGLQKVXXXXXXXXXXXEQPTE 197
           NRDIN LLR +L EK+  EK++K  +D K + LLQ A  GLQ++           E    
Sbjct: 192 NRDINVLLRAALFEKQTAEKQLKEMNDQKGLALLQIAGRGLQRIGFGFGLGESVEESSET 251

Query: 198 GXXXXXXXXXXXXXXXXXXXXTVERIMKNLRLEITQLRRALEESR 242
           G                     +E+ MK LR E++QL+ +LEESR
Sbjct: 252 G-------NIANEEEENGVVIAIEKTMKKLRQEVSQLKISLEESR 289