Miyakogusa Predicted Gene

Lj5g3v1998990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1998990.1 Non Chatacterized Hit- tr|D8UA15|D8UA15_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,36.36,9e-19,MttA_Hcf106,Twin-arginine translocation protein
TatA/B/E; seg,NULL; tatAE: twin arginine-targeting p,CUFF.56323.1
         (260 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52440.1 | Symbols: HCF106 | Bacterial sec-independent transl...   226   1e-59
AT5G28750.1 | Symbols:  | Bacterial sec-independent translocatio...    57   9e-09

>AT5G52440.1 | Symbols: HCF106 | Bacterial sec-independent
           translocation protein mttA/Hcf106 |
           chr5:21286896-21288613 FORWARD LENGTH=260
          Length = 260

 Score =  226 bits (576), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 136/263 (51%), Positives = 164/263 (62%), Gaps = 17/263 (6%)

Query: 1   MTQSLAMVSSTVLCPKLGACAVSLSPSATPHTKIQRFHLSSWLSPMGRSLFSPWNGLKHL 60
           M  +L +++S+   P +    +   P      K  + +LSSW S +G S FSP+ GLKHL
Sbjct: 1   MAMALQIIASSSSSPTITKSHLFSYPPLQSRYKASKPNLSSWFSLLGSSRFSPYIGLKHL 60

Query: 61  GISTKPKPLFHIDRKGRCKGKLVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGK 120
           GIS  PK   + ++K RCK  ++ ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGK
Sbjct: 61  GISISPKS-SNPEKKRRCKSMMIRASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGK 119

Query: 121 TLRTFQPTIRELQDVSREFKSTLEREIGLDDISSPTQNPYNSNFQN----XXXXXXXXXX 176
           TLRTFQPTIRELQDVSR+FKSTLEREIGLDDIS+P  N YN N  N              
Sbjct: 120 TLRTFQPTIRELQDVSRDFKSTLEREIGLDDISTP--NVYNQNRTNPVQPPPPPPPPSVP 177

Query: 177 XXXXPI-AVDPDGTQDPSRAYSSEEYLKITEEQLKA------SAAQQQQGQTPPRKEGEL 229
               P+ A DP+ +Q P +AY+SE+YLK TEEQLKA          Q Q Q PP+     
Sbjct: 178 STEAPVTANDPNDSQSP-KAYTSEDYLKFTEEQLKALSPAESQTEDQTQTQEPPQPTTVQ 236

Query: 230 EP--QIQPLAAKETATTVSPPQK 250
            P  + QP       T  SPP++
Sbjct: 237 TPTGESQPNGTARETTAASPPRQ 259


>AT5G28750.1 | Symbols:  | Bacterial sec-independent translocation
           protein mttA/Hcf106 | chr5:10784142-10785677 REVERSE
           LENGTH=147
          Length = 147

 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 12/90 (13%)

Query: 62  ISTKP--KPLFHIDRKGR---CKGKLVYASLFGVGAPEALVIGVVALLVFGPKGLAEVAR 116
           ++T+P  + L  I R+ R    +  L   +LFG+G PE  VI  VA L+FGPK L E+ +
Sbjct: 33  VTTRPNTRSLVAIGRRIRQEPTRKPLTCNALFGLGVPELAVIAGVAALLFGPKKLPEIGK 92

Query: 117 NLGKTLRTFQPTIRELQDVSREFKSTLERE 146
           ++GKT+++F       Q  ++EF+S L+ E
Sbjct: 93  SIGKTVKSF-------QQAAKEFESELKTE 115