Miyakogusa Predicted Gene

Lj5g3v1988870.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1988870.1 tr|G7JX91|G7JX91_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_5g057710 PE=4 SV=1,33.33,0.002,A
Receptor for Ubiquitination Targets,F-box domain, cyclin-like;
F_box_assoc_1: F-box protein intera,CUFF.56310.1
         (392 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    59   5e-09
AT3G23880.1 | Symbols:  | F-box and associated interaction domai...    57   3e-08

>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 141/350 (40%), Gaps = 79/350 (22%)

Query: 29  VKSLMRFKLVSKSFNSLISSPHFVKLHL------------HR---CSSPNANPLIIFCPP 73
            KS+ RF+ VSK F +L S P F K+HL            HR    SS N   L      
Sbjct: 50  AKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIVSSHNLYSLDFNSIG 109

Query: 74  DD--DVDEIEYXXXXXXXXXXXXXIL----------DELQYLPVNWEGPHI----VVGSC 117
           D   D+  +E+             ++          D    L +N +        +VGS 
Sbjct: 110 DGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNAKSYRRNWVEIVGSS 169

Query: 118 NGLLC-TVGSGTLYSHYRVHHVWVSVLNPVTRSTSH-KSLFMPDHVE--QMXXXXXXXXY 173
           NGL+C + G G ++           + NP T  +      F P  VE  +         +
Sbjct: 170 NGLVCISPGEGAVF-----------LYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGF 218

Query: 174 DYVSNTYKVLFL----EEHRDVVVYNMGDNNWRHTGCCFPSNLTTLIGDY-KGVHLNGTL 228
           D +++ YK++ L    E+  D  VY++  ++WR   C    N     G Y  GVH NG +
Sbjct: 219 DGLTDDYKLVKLVATSEDILDASVYSLKADSWRRI-CNL--NYEHNDGSYTSGVHFNGAI 275

Query: 229 NWLAILKIYEDNYDFELHKYDFEWDNGSCLITSFDLNKEEFVRLLLPVMP----HKFSDP 284
           +W+                   E  +   ++ +FD+  EEF  + +P       H+FS+ 
Sbjct: 276 HWVFT-----------------ESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNF 318

Query: 285 HLGVLGECLCV--SVDDGLDNFMIWQMKEFGDDGSWIKLLSINYHQDIKP 332
            +G L   LCV  S  D  D+  IW M E+G+  SW ++     ++ +KP
Sbjct: 319 VVGSLNGRLCVVNSCYDVHDD--IWVMSEYGEAKSWSRIRINLLYRSMKP 366


>AT3G23880.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:8622061-8623155
           REVERSE LENGTH=364
          Length = 364

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 126/347 (36%), Gaps = 65/347 (18%)

Query: 29  VKSLMRFKLVSKSFNSLISSPHFVKLHLHRCSSPNANPLIIFCPPDDDVDEIEYXXXXXX 88
           VKSL RFK V  S+ SLIS   F   H           LI+         +  Y      
Sbjct: 28  VKSLTRFKCVCSSWRSLISETLFALKH----------ALILETSKATTSTKSPYGVITTS 77

Query: 89  XXXXXXXILDELQYLPVNWEGPH----------IVVGSCNGLLCTVGSGTLYSHY-RVHH 137
                   +  L      +   H           VVG+C+GL+C       +  Y +  +
Sbjct: 78  RYHLKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVC------FHVDYDKSLY 131

Query: 138 VWVSVLNPVTRSTSHKSLFMPDHVEQMXXXXXXXXYDYVSNTYKVLFLEEHRDVV----- 192
           +W    NP  +     S    +  +          YD   + YKV+ L + R  V     
Sbjct: 132 LW----NPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQVKIETK 187

Query: 193 VYNMGDNNWRHTGCCFPSNLTTLIGDYKGVHLNGTLNWLAILKIYEDNYDFELHKYDFEW 252
           +Y+     WR +   FPS +        G+++NGTLNW A                    
Sbjct: 188 IYSTRQKLWR-SNTSFPSGVVVADKSRSGIYINGTLNWAATSSSSSWT------------ 234

Query: 253 DNGSCLITSFDLNKEEFVRLLLPVMPHKFS-DPHLGVLGECLCVSVDDGLDNFMIWQMKE 311
                 I S+D++++EF  L  PV   +      LG L  CL +       N  +W MKE
Sbjct: 235 ------IISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGANADVWVMKE 288

Query: 312 FGDDGSWIKLLSINYHQD-IKPRG--------LPFPFGFAKYMFDNG 349
           FG+  SW KLLSI    D ++P          L F  G A Y   NG
Sbjct: 289 FGEVYSWSKLLSIPGLTDFVRPLWISDGLVVLLEFRSGLALYNCSNG 335