Miyakogusa Predicted Gene

Lj5g3v1988690.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1988690.1 Non Chatacterized Hit- tr|J3MAK4|J3MAK4_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB06G1,86.67,4e-19,coiled-coil,NULL; seg,NULL,CUFF.56425.1
         (78 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G25670.2 | Symbols:  | unknown protein; LOCATED IN: cellular_...    73   3e-14
AT4G25670.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    73   3e-14
AT4G25690.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...    73   3e-14
AT4G25690.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    73   3e-14
AT5G52550.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    66   6e-12

>AT4G25670.2 | Symbols:  | unknown protein; LOCATED IN:
          cellular_component unknown; EXPRESSED IN: male
          gametophyte, pollen tube; EXPRESSED DURING: M
          germinated pollen stage; BEST Arabidopsis thaliana
          protein match is: unknown protein (TAIR:AT4G25690.2). |
          chr4:13085431-13085997 REVERSE LENGTH=188
          Length = 188

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 43/57 (75%)

Query: 22 DELDRLKQAEKKKRRLEKALATSAAIISELXXXXXXXXXXXXRLDEEGAAIAEAVAL 78
          DE DR+KQAEKKKRRLEKALATSAAI +EL            RLDEEGAAIAEAVAL
Sbjct: 23 DEFDRIKQAEKKKRRLEKALATSAAIRAELEKKKQKRLEEQQRLDEEGAAIAEAVAL 79


>AT4G25670.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT4G25690.2); Has 30201 Blast hits to 17322
          proteins in 780 species: Archae - 12; Bacteria - 1396;
          Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
          0; Other Eukaryotes - 2996 (source: NCBI BLink). |
          chr4:13085431-13085997 REVERSE LENGTH=188
          Length = 188

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 43/57 (75%)

Query: 22 DELDRLKQAEKKKRRLEKALATSAAIISELXXXXXXXXXXXXRLDEEGAAIAEAVAL 78
          DE DR+KQAEKKKRRLEKALATSAAI +EL            RLDEEGAAIAEAVAL
Sbjct: 23 DEFDRIKQAEKKKRRLEKALATSAAIRAELEKKKQKRLEEQQRLDEEGAAIAEAVAL 79


>AT4G25690.2 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT4G25670.2); Has 35333 Blast hits to 34131
          proteins in 2444 species: Archae - 798; Bacteria -
          22429; Metazoa - 974; Fungi - 991; Plants - 531;
          Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
          BLink). | chr4:13090421-13090996 REVERSE LENGTH=191
          Length = 191

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 43/57 (75%)

Query: 22 DELDRLKQAEKKKRRLEKALATSAAIISELXXXXXXXXXXXXRLDEEGAAIAEAVAL 78
          DE DR+KQAEKKKRRLEKALATSAAI +EL            RLDEEGAAIAEAVAL
Sbjct: 23 DEFDRIKQAEKKKRRLEKALATSAAIRAELEKKKQKRLEEQQRLDEEGAAIAEAVAL 79


>AT4G25690.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT4G25670.2); Has 73 Blast hits to 60 proteins in
          13 species: Archae - 0; Bacteria - 2; Metazoa - 4;
          Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr4:13090421-13090996
          REVERSE LENGTH=191
          Length = 191

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 43/57 (75%)

Query: 22 DELDRLKQAEKKKRRLEKALATSAAIISELXXXXXXXXXXXXRLDEEGAAIAEAVAL 78
          DE DR+KQAEKKKRRLEKALATSAAI +EL            RLDEEGAAIAEAVAL
Sbjct: 23 DEFDRIKQAEKKKRRLEKALATSAAIRAELEKKKQKRLEEQQRLDEEGAAIAEAVAL 79


>AT5G52550.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G25670.2); Has 30201 Blast hits to 17322
           proteins in 780 species: Archae - 12; Bacteria - 1396;
           Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
           0; Other Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:21327914-21328996 REVERSE LENGTH=360
          Length = 360

 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 44/57 (77%)

Query: 22  DELDRLKQAEKKKRRLEKALATSAAIISELXXXXXXXXXXXXRLDEEGAAIAEAVAL 78
           +EL+R+KQAE+KKRR+EK++ATSAAI +EL            RLDEEGAAIAEAVAL
Sbjct: 188 EELERIKQAERKKRRIEKSIATSAAIRAELEKKKLRKLEEQRRLDEEGAAIAEAVAL 244



 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 38/53 (71%)

Query: 22  DELDRLKQAEKKKRRLEKALATSAAIISELXXXXXXXXXXXXRLDEEGAAIAE 74
           DEL+R+KQAE KK RLEK++ATSAAI++EL            RL EEGAAIAE
Sbjct: 85  DELERIKQAENKKNRLEKSIATSAAIMAELEKKKLRKLEEQKRLAEEGAAIAE 137