Miyakogusa Predicted Gene

Lj5g3v1973360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1973360.1 Non Chatacterized Hit- tr|B9FH16|B9FH16_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,30.56,0.000000000000004,F-box domain,F-box domain, cyclin-like;
seg,NULL; A Receptor for Ubiquitination Targets,F-box
domain,CUFF.56294.1
         (209 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52880.1 | Symbols:  | F-box family protein | chr5:21432002-2...   105   2e-23

>AT5G52880.1 | Symbols:  | F-box family protein |
           chr5:21432002-21433695 REVERSE LENGTH=269
          Length = 269

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 99/176 (56%), Gaps = 23/176 (13%)

Query: 1   MAISEYKNAIVSYKRRSQAHHHIEDGHVEEGSFELPRDILENIFSSLDMQSLVSAGLVCR 60
           +AI E+K A V+ KRRS+     ED  +      LP+DIL +IFS L++ SLVS+  V R
Sbjct: 86  LAIVEFKQAKVALKRRSKNREE-EDIDIPS----LPQDILIHIFSFLEISSLVSSAQVSR 140

Query: 61  SWSVAANDNHLWELQYGVLFGAAKQRATRLVENRNSRLFSEPIDSTTITDWKEAVKKAY- 119
           SW+ A ++N LW+ Q+ + F              N ++    I   +  DW+EA KKAY 
Sbjct: 141 SWNQATHENSLWQSQFDLHF--------------NHKVL---IRMQSDIDWREAFKKAYI 183

Query: 120 NGSLSKKLSTNRGYCEHCETVVWLNNSKCPNVWCGRMSRNQNVKQLTTLQVVEYIL 175
             + S+ L + RGYC +C+++VW  N +C N  C   S N+ +  +TT QVV Y+L
Sbjct: 184 AANSSEALRSGRGYCSYCDSIVWHENLRCLNKQCRLKSGNKPLDLITTHQVVNYLL 239