Miyakogusa Predicted Gene

Lj5g3v1972310.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1972310.1 tr|Q6IP64|Q6IP64_XENLA MGC78924 protein
OS=Xenopus laevis GN=polr3e PE=2 SV=1,26.03,7e-18,Sin_N,DNA-directed
RNA polymerase III subunit Rpc5; DNA-DIRECTED RNA POLYMERASES III 80
KDA POLYPEPT,CUFF.56373.1
         (656 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49530.1 | Symbols:  | SIN-like family protein | chr5:2010093...   377   e-104

>AT5G49530.1 | Symbols:  | SIN-like family protein |
           chr5:20100934-20104242 FORWARD LENGTH=689
          Length = 689

 Score =  377 bits (967), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 245/603 (40%), Positives = 339/603 (56%), Gaps = 50/603 (8%)

Query: 67  EDQIVREIDVFFTPSLDENTELYVLQYPLRPSWRPYEFEERCKEVRLKPISSRVEIDLSI 126
           +D +VREIDVFF PS+D NT+LYVLQYPLRPSWRPYE +ERC+EVR+ P +S+VEIDLS+
Sbjct: 115 DDVVVREIDVFFKPSIDANTQLYVLQYPLRPSWRPYEMDERCEEVRVNPSTSQVEIDLSM 174

Query: 127 DLDSQNIDRDFADKYSITKQTLHTPWEPATANGCVVGLLTGDKLHLHPISAIVQLRPSLK 186
           D+ S+N D +F    ++TKQTL T W+        VG+L+GDKLHL+P+ A+ QLRPS++
Sbjct: 175 DVHSKNYDSNFG--LNMTKQTLKTTWKQPPTLDYAVGVLSGDKLHLNPVHAVAQLRPSMQ 232

Query: 187 HLNPGGSERTNIISTTVKIEGPSXXXXXXXXXXXXXXMEPPTEQKSDEVECWVPLKYHDC 246
            L+    +         K E  +               +  T+QK    E WV LKYH  
Sbjct: 233 SLSSDKKK---------KQEESTEESVGTSKKQNKGVQQASTDQKPINEETWVSLKYHGL 283

Query: 247 KSDISSRYLQQMVAQESTPMNFTVSPYDYVTTLCPALSS-NSLPKGPSKRYLLSLPLTVE 305
           +S+  SRYL  M+A  ++ ++F +SP  Y+  LC   SS NS  K   KR LLSLPL  +
Sbjct: 284 QSEYCSRYLNGMMANGNSSIDFNMSPGTYINELCRGGSSRNSESKETLKRVLLSLPL--K 341

Query: 306 ERLHKMFIEGPPLRRFNAIKHFAPEYSDKELLEYLQKHAVLLWGLWTPKSGFLISKPGFE 365
           ER+ K+  EG PL R++ +KH+APE+SD++ L  LQ++  L+ GLWTPK+  L+   G  
Sbjct: 342 ERVQKLLCEGSPLIRYSVLKHYAPEFSDEDFLGALQEYGRLVQGLWTPKT-RLLKLDGPV 400

Query: 366 QLARDYVLILFSKNLNVRSSDVIVNFQGELGNSVRNFLRKFGLERCDINKTMSQPMTYWK 425
           + ARDYVL LFS+N  ++ S+V      ++   +   L +F  ER          +  WK
Sbjct: 401 EAARDYVLSLFSQNTTIKYSEVEATGD-KMKPLMERMLTEFAKER--------HVLKDWK 451

Query: 426 LRELPDESFKKLHPDVVKIQE----DKFTALDHNVTNSISKFVKPKRGQSAMTNHS--VK 479
            +E  D SF K +P++VK Q+    DK   L   +T    K    KR     T+ S  VK
Sbjct: 452 FKEPTDVSFIKSYPEIVKEQDIFWTDKRENLKSRITAQGGKSRADKRRNVVGTSSSVTVK 511

Query: 480 SEL--------VKSANSDPRVTSLGGVPPGKMTMSNETRHALPIALKKLFQTHQVCSFQF 531
            E+          S N+  RV +          M  E + ALP ALKK+FQTH+VC ++ 
Sbjct: 512 PEVPTTLSDKGGSSKNTIHRVVT--------QEMPEELKKALPKALKKVFQTHKVCRYET 563

Query: 532 IREELRKMAVSKTTLSKGDSKIAVDAAHSLDGPEHELKAVISDVACDIHGYYVLKSSQDD 591
           I + LR +AVS +   K DS +AV+ A ++D  + EL+ VI+ VA +IHG YV  SS D 
Sbjct: 564 ICQGLRDLAVSTSNNPKADSGMAVNVALAVDAYQGELEDVINGVATNIHGSYVSISSPDH 623

Query: 592 P----FRDVVIDLLRGSGPNXXXXXXXXXXXXXXXXXXXVPNNEFTKVMKELCVSKGSVW 647
           P     R+VVI LL GS P                    + NNE+ KVM E+C +  S W
Sbjct: 624 PEYDSLREVVISLLTGSPPGTKLMKAEVFAAGRTKLEREITNNEYIKVMHEICETNSSGW 683

Query: 648 VLK 650
           VL+
Sbjct: 684 VLQ 686