Miyakogusa Predicted Gene

Lj5g3v1959090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1959090.1 Non Chatacterized Hit- tr|I1NH10|I1NH10_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13293 PE,82.61,0,RRM,RNA
recognition motif domain; SMALL NUCLEAR RIBONUCLEOPROTEIN,NULL; U1
SMALL NUCLEAR RIBONUCLEOP,CUFF.56278.1
         (252 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21320.2 | Symbols:  | nucleotide binding;nucleic acid bindin...   227   5e-60
AT1G21320.1 | Symbols:  | nucleotide binding;nucleic acid bindin...   213   8e-56
AT1G76940.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   207   4e-54
AT1G76940.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   168   3e-42
AT2G47580.1 | Symbols: U1A | spliceosomal protein U1A | chr2:195...    50   1e-06
AT3G13700.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    48   5e-06

>AT1G21320.2 | Symbols:  | nucleotide binding;nucleic acid binding |
           chr1:7462834-7466164 REVERSE LENGTH=253
          Length = 253

 Score =  227 bits (579), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 128/251 (50%), Positives = 159/251 (63%), Gaps = 10/251 (3%)

Query: 1   MTDGYWNRQ---QAMYPSAGGIL--KRPRTEYDMSPSGLTSANDMHNFISRDNDRTGHQG 55
           M D YWN+Q   Q    S   +L  KRPR+++  +P  L  + DMH+++S+D DR     
Sbjct: 1   MADEYWNQQRQYQLPISSNPHVLPPKRPRSDFQGTPY-LIPSGDMHSYLSQDEDRGIPHS 59

Query: 56  IKDTKTLGSAYDRYLQSAGLTSFNSGEASTIXXXXXXXXXXXXXXXXXXDPAVMGHLGGG 115
           +KDT+++GSAYDRYLQS       S EA                        +M   GG 
Sbjct: 60  VKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVRQGGSNMMPGPSMGELMAGCGGS 119

Query: 116 -GHDLARNGRNANYGGQLPVDAVSRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFR 174
              D   NGR+  +G    +D+V RPG E  PLPPD S+TLYVEGLPS+C++REV+HIFR
Sbjct: 120 LPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFR 176

Query: 175 PFVGYREVRLVTKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELSPESSHLRL 234
           PFVGYREVRLVT++SKHR GDP +LCFVDF N ACAATALSALQ Y++DE  P+S  LRL
Sbjct: 177 PFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRL 236

Query: 235 QFSRFPGPRSG 245
           QF R PGPR G
Sbjct: 237 QFFRNPGPRPG 247


>AT1G21320.1 | Symbols:  | nucleotide binding;nucleic acid binding |
           chr1:7462834-7465200 REVERSE LENGTH=421
          Length = 421

 Score =  213 bits (543), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 117/220 (53%), Positives = 142/220 (64%), Gaps = 6/220 (2%)

Query: 34  LTSANDMHNFISRDNDRTGHQGIKDTKTLGSAYDRYLQSAGLTSFNSGEASTIXXXXXXX 93
           L  + DMH+++S+D DR     +KDT+++GSAYDRYLQS       S EA          
Sbjct: 206 LIPSGDMHSYLSQDEDRGIPHSVKDTRSIGSAYDRYLQSMQTFFVPSEEAGPFNGVGMVR 265

Query: 94  XXXXXXXXXXXDPAVMGHLGGG-GHDLARNGRNANYGGQLPVDAVSRPGPETVPLPPDAS 152
                         +M   GG    D   NGR+  +G    +D+V RPG E  PLPPD S
Sbjct: 266 QGGSNMMPGPSMGELMAGCGGSLPSDFRPNGRDMGFGQ---LDSVGRPGREPHPLPPDVS 322

Query: 153 STLYVEGLPSDCTKREVAHIFRPFVGYREVRLVTKESKHRGGDPLILCFVDFANPACAAT 212
           +TLYVEGLPS+C++REV+HIFRPFVGYREVRLVT++SKHR GDP +LCFVDF N ACAAT
Sbjct: 323 NTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQDSKHRSGDPTVLCFVDFENSACAAT 382

Query: 213 ALSALQGYKVDELSPESSHLRLQFSRFPGPRSGAGPRGKR 252
           ALSALQ Y++DE  P+S  LRLQF R PGPR G   RG R
Sbjct: 383 ALSALQDYRMDEDEPDSKILRLQFFRNPGPRPGQ--RGGR 420


>AT1G76940.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:28902707-28904085 REVERSE LENGTH=233
          Length = 233

 Score =  207 bits (528), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 125/252 (49%), Positives = 155/252 (61%), Gaps = 19/252 (7%)

Query: 1   MTDGYWNRQQAMYPSAGGILKRPRTEYDMSPSGLTSANDMHNFISRDNDRTGHQGIKDTK 60
           M DGYWN+Q+  +   GG +KRPR++++ +PS   +      +  RD D      + DT+
Sbjct: 1   MADGYWNQQRQQHHPPGGPMKRPRSDFE-APSSTMTIGHGGGYYPRDEDLD----VPDTR 55

Query: 61  TLGSAYDRYLQSAGLTSFNSGEASTIXXXXXXXXXXXXXXXXXXDPAVMGHLGGGGHDLA 120
           T+GSAYDRYLQS       SGE  ++                      M  L  GG    
Sbjct: 56  TIGSAYDRYLQSV-----QSGEGGSVSMGRSGGGGGGGGGNVQTIDDFM--LRRGGVLPL 108

Query: 121 RNGRNANYGGQLPVDAVSRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFRPFVGYR 180
            +G N +  G  P + V R       LP DAS+TLYVEGLPS+C++REVAHIFRPFVGYR
Sbjct: 109 DHGPNGHTIGFDPPEPVGRRN-----LPSDASNTLYVEGLPSNCSRREVAHIFRPFVGYR 163

Query: 181 EVRLVTKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELSPESSHLRLQFSRFP 240
           EVRLVTK+SKHR GDP++LCFVDF NPACAATALSALQGY++DE   +S  LRLQFSR P
Sbjct: 164 EVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRKP 223

Query: 241 GPRSGAGPRGKR 252
           G R G   RG+R
Sbjct: 224 GSRPGQ--RGRR 233


>AT1G76940.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:28902707-28904085 REVERSE LENGTH=179
          Length = 179

 Score =  168 bits (426), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/133 (66%), Positives = 102/133 (76%), Gaps = 11/133 (8%)

Query: 129 GGQLPVD------AVSRPGPETV---PLPPDASSTLYVEGLPSDCTKREVAHIFRPFVGY 179
           GG LP+D       +    PE V    LP DAS+TLYVEGLPS+C++REVAHIFRPFVGY
Sbjct: 49  GGVLPLDHGPNGHTIGFDPPEPVGRRNLPSDASNTLYVEGLPSNCSRREVAHIFRPFVGY 108

Query: 180 REVRLVTKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDELSPESSHLRLQFSRF 239
           REVRLVTK+SKHR GDP++LCFVDF NPACAATALSALQGY++DE   +S  LRLQFSR 
Sbjct: 109 REVRLVTKDSKHRNGDPIVLCFVDFTNPACAATALSALQGYRMDENESDSKFLRLQFSRK 168

Query: 240 PGPRSGAGPRGKR 252
           PG R G   RG+R
Sbjct: 169 PGSRPGQ--RGRR 179


>AT2G47580.1 | Symbols: U1A | spliceosomal protein U1A |
           chr2:19517229-19518686 FORWARD LENGTH=250
          Length = 250

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 23/120 (19%)

Query: 117 HDLARNGRNAN------YGGQLPVDAVSRPG------PETVPLPPDASSTLYVEGLPSDC 164
           HD  + G   N      YG   P+  V  PG      PE  P PP+  + L+V+ LP + 
Sbjct: 132 HDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEA-PAPPN--NILFVQNLPHET 188

Query: 165 TKREVAHIFRPFVGYREVRLVTKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDE 224
           T   +  +F  + G++EVR++  +          + FV+FA+   +  A+  LQG+K+ +
Sbjct: 189 TPMVLQMLFCQYQGFKEVRMIEAKPG--------IAFVEFADEMQSTVAMQGLQGFKIQQ 240


>AT3G13700.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:4490859-4492632 REVERSE LENGTH=287
          Length = 287

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 142 PETVPL---PPDASSTLYVEGLPSDCTKREVAHIFRPFVGYREVRLVTKESKHRGGDPLI 198
           P  +PL    P A +TL+V GLP+D   RE+ ++FR   G+   +L     K+ G    +
Sbjct: 23  PPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGFESCQL-----KYTGRGDQV 77

Query: 199 LCFVDFANPACAATALSALQGYKVDELSPESSHLRLQFSRF-PGPRSGAGP 248
           + F  F +   A  A++ L G K D  +  + H+ L  S      R G+GP
Sbjct: 78  VAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKERPGSGP 128