Miyakogusa Predicted Gene

Lj5g3v1957010.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1957010.2 tr|B9MUH7|B9MUH7_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_917210
PE=4,76.37,0,ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE
PROTEIN-RELATED,RFT1; Rft-1,RFT1,CUFF.56271.2
         (519 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07630.1 | Symbols:  | lipid transporters | chr5:2410703-2414...   746   0.0  

>AT5G07630.1 | Symbols:  | lipid transporters | chr5:2410703-2414523
           FORWARD LENGTH=611
          Length = 611

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/522 (68%), Positives = 435/522 (83%), Gaps = 3/522 (0%)

Query: 1   MSKDTDP-ANLSRTFKYLLATQFLSRGIPFIFNTWIVRHLTQEDYALYAVQFHLFVTCVL 59
           M+ ++D   NLSR FK+ L+ QF+SR IPF+FN+WIVRHLT+ DYALYA+QFHLFVTCVL
Sbjct: 90  MATNSDNNVNLSRIFKFSLSRQFISRSIPFVFNSWIVRHLTERDYALYAIQFHLFVTCVL 149

Query: 60  FLSREGFRRACMRMDIRRDGTSMEEDVVKLMKVVWMSLPLGIFITIVACLLVFWWQDISY 119
           FLSREGFRRAC+R   +RDG   EE+V +++KV W+++PLGI ITI AC+ V WWQ++SY
Sbjct: 150 FLSREGFRRACLRAGTKRDGPESEENVTRILKVAWVTVPLGIAITIAACIFVLWWQNLSY 209

Query: 120 STPHGQAILINGCACILELLAEPLYILSQNLVLLELRLMVETLATLSRCLTMYFLIVKQT 179
           S P+ QAI I+G AC+LEL+AEPLYILSQ L+ L+LRL+VET+ATL+RC+T+Y L+V QT
Sbjct: 210 SDPYAQAIWIHGFACVLELMAEPLYILSQTLLKLQLRLIVETVATLARCVTLYSLLVMQT 269

Query: 180 GMEKSIIFALSQSAYGACLFLGYWGYMVLLRKFRYSYLFPFRERKVIGFDRQLSKMCMLF 239
            MEK IIFALSQ AYG  LF+GYW Y ++   +R S LFPFR    + FD  LSKMC LF
Sbjct: 270 NMEKVIIFALSQVAYGGSLFIGYWAYFLICGVYRSSNLFPFRPGNFMDFDNDLSKMCKLF 329

Query: 240 TFQSYRKLILQEGEKMVLVWLDTPYNQAVYGLVDKLGSLVVRLLFLPFEESSYTTFARFA 299
           TFQS+RKLILQEGEK+VLVWLDTPYNQAVYG+VDKLGSLVVR++FLPFEESSYT FARFA
Sbjct: 330 TFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGSLVVRMVFLPFEESSYTIFARFA 389

Query: 300 SGQYPGKSKKLGNCLTESLKLVLLIGLVFIAFGPSYSYSLIRLLYGQKWSDGEAATALRY 359
           SG Y  ++KKLG  LT +LKLV+LIGL+F+AFGPSYSYSLIRLLYG+KWSDGEA+ AL++
Sbjct: 390 SGDYQERNKKLGIYLTVALKLVILIGLIFMAFGPSYSYSLIRLLYGEKWSDGEASLALQF 449

Query: 360 YCFYVIVLAMNGTSEAFMHAVATESQLKRSNDSLLVFSLIYIALNVLLIKLSGAVGLIIA 419
           YC Y+IVLAMNGTSEAF+HAV T+++L+RSND LL+FSLIY+ALN+LLI+ +GA+GLI+A
Sbjct: 450 YCLYIIVLAMNGTSEAFLHAVGTKNELERSNDMLLIFSLIYVALNILLIRSAGAIGLIMA 509

Query: 420 NSLNMTLRILYSAIFIKNYFKGSSSFSFCDCLPSGWIILLLSGVITLISENVFLDQDNFW 479
           NSLNM  RI+YS  FI+ YF+G+SSFSF  C P GW IL+LS +ITLISE   LD+ NFW
Sbjct: 510 NSLNMIFRIIYSGRFIQRYFQGTSSFSFRKCFPLGWQILILSSIITLISEKTILDRKNFW 569

Query: 480 PSFMIHFSVGLACFCVSAYVIYCREKPFIKRITRFRD--HSD 519
            +F +HF +G+ CFC+SA VIY RE+ FIKRI RFRD  H D
Sbjct: 570 ETFPLHFGIGVICFCLSAIVIYRRERVFIKRIKRFRDYNHDD 611