Miyakogusa Predicted Gene

Lj5g3v1950950.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1950950.1 Non Chatacterized Hit- tr|I1LDH0|I1LDH0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.2890
PE=,85.25,0,UIM,Ubiquitin interacting motif; seg,NULL;
Ubiquitin-interacting motif.,Ubiquitin interacting motif;,CUFF.56232.1
         (617 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43690.1 | Symbols:  | ubiquitin interaction motif-containing...   695   0.0  

>AT1G43690.1 | Symbols:  | ubiquitin interaction motif-containing
           protein | chr1:16478519-16482589 FORWARD LENGTH=599
          Length = 599

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/621 (59%), Positives = 437/621 (70%), Gaps = 26/621 (4%)

Query: 1   MADRGEEDDLEMAIRMSMQENPTPEPKRSKP-RDVVDGVVSGSPEDSPEYKTXXXXXXXX 59
           MAD  E++DL++A++MSMQ NP PEPKRSKP  +   G  S S  +SPE K+        
Sbjct: 1   MADHQEDEDLKLALKMSMQYNP-PEPKRSKPIEEEETGSGSQSGGESPEAKSRRLQRELM 59

Query: 60  XXXXXXXXTTSWVSPSPPQSPAGKGVIKGAEAGKTEQDLRLKGGDLSKVLSVDEANQLFV 119
                        SPSP      K  +        ++D  + G  L K LSV+E++QLF 
Sbjct: 60  AAAAEKRMVLFPKSPSP----VNKARVLPISVVGGDKDEEVVGSCLGKELSVEESDQLFS 115

Query: 120 MVFGSEVSKGILAQWSNQGIRFSSDPVTSMGLVQHEGGPCGVLAAIQAFVLKYILFFSDE 179
           +VFG+EVSK +LAQW+NQGIRFS DP T++GLVQHEGGPCGVLAA+QAFVLKY+L+F  +
Sbjct: 116 IVFGNEVSKSVLAQWTNQGIRFSPDPETTIGLVQHEGGPCGVLAALQAFVLKYLLYFPGD 175

Query: 180 LKDVSLMPQNRGLGASFKSQSVPSYNFSSLSEGGKVRALVRSMGEILFSCGNNRRAVIAT 239
                 M    G+    K + V S +FSS++E  K +ALVRSM EILF CG+N RAVIA+
Sbjct: 176 RVASPCM----GVWTLSKDRHVVSDSFSSVTEEAKTKALVRSMCEILFMCGDNNRAVIAS 231

Query: 240 LSIPENDILRFDGISEHEVMARSLEGLSIESASDLQKVLRVETYTSQTTLLQRLEAVIPL 299
            +        F+  S ++       GL IESASDLQK+LR ET+T+Q +   +LE  I  
Sbjct: 232 FT-------NFEDSSSNQKDEAMAGGLPIESASDLQKILRFETFTTQASAQNKLEGTITA 284

Query: 300 FQSRMGALLFLISALLSRGLDLVQSDRDDPSLPLVTAPFGHASQEIVNLLLCGQAVPNVF 359
           FQSRMGALLFLISALLSRGLD VQ+DRDDP+LPLVTAPFGHASQEIVNLLLCG+AVPNVF
Sbjct: 285 FQSRMGALLFLISALLSRGLDSVQADRDDPNLPLVTAPFGHASQEIVNLLLCGEAVPNVF 344

Query: 360 DGRMDLGGGMFLKGISQNVEVGFLTLLESLNFCKVGQFLKSPQWPIWVVGSESHYTVLFA 419
           DGRMDLGGGMFLKGIS+NV+VGFLTLLESLNFCKVGQ LK P+WPIWV+GSESHYTVLFA
Sbjct: 345 DGRMDLGGGMFLKGISKNVDVGFLTLLESLNFCKVGQNLKCPKWPIWVIGSESHYTVLFA 404

Query: 420 LDPSVQNENELEGRETEIRRAFDAQDQSGGGGFISVEGFHHVLRETNIKLPSDKLDHLCG 479
           LDPSVQ ENELE RE++IRRAFDA+DQSGGGGFI+VE FH V +ETNI+LP  KLD +C 
Sbjct: 405 LDPSVQEENELELRESQIRRAFDARDQSGGGGFITVEAFHQVAQETNIRLPIKKLDDICA 464

Query: 480 AGFIVWSEFWQVIXXXXXXXXXXXXXXXXXXXXVFDLYHFNGIAKSDLNG---SQVNAGG 536
            GFIVWSE WQVI                    VFD+YHFNGIAKSD+NG   +    GG
Sbjct: 465 TGFIVWSELWQVILELDQNLGGIKDATGLMGKKVFDIYHFNGIAKSDINGGGQAMAVEGG 524

Query: 537 ETPLQRPRLTKLSVSVPPRWTPEEFMADVNVXXXXXXXXXXXXXXEVSKPEPTQHAPLVD 596
             P+QRPRLTKL+VSVPP+WTPEE+M                   EV++P+P QHAPLVD
Sbjct: 525 MVPMQRPRLTKLNVSVPPKWTPEEYMT------CALPPSSSEKDSEVNQPKPVQHAPLVD 578

Query: 597 CIRTRWPRAVCSWLGDPPSIV 617
           CIRTRW RA CSW GDPPSIV
Sbjct: 579 CIRTRWSRAACSWSGDPPSIV 599