Miyakogusa Predicted Gene

Lj5g3v1950880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1950880.1 Non Chatacterized Hit- tr|B8LM63|B8LM63_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,51.55,3e-18,FAMILY NOT NAMED,NULL; Myb_DNA-bind_4,NULL; seg,NULL;
coiled-coil,NULL,CUFF.56227.1
         (449 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21200.1 | Symbols:  | sequence-specific DNA binding transcri...   415   e-116
AT1G76870.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   318   4e-87
AT3G10040.1 | Symbols:  | sequence-specific DNA binding transcri...   159   3e-39

>AT1G21200.1 | Symbols:  | sequence-specific DNA binding
           transcription factors | chr1:7421483-7422814 FORWARD
           LENGTH=443
          Length = 443

 Score =  415 bits (1066), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/434 (54%), Positives = 282/434 (64%), Gaps = 18/434 (4%)

Query: 21  DLPGSIQVHHHQGQHPHAMQQHQTHPCQGSTVHVHDGFPRTMGTLQSSCD----PTLSMS 76
           DL GS++VHH    +    QQH+ +P   ++  +H+G P TM T Q+ CD      +SMS
Sbjct: 22  DLQGSMRVHHQDSMN----QQHRHNP---NSRPLHEGLPFTMVTGQT-CDHHQNQNMSMS 73

Query: 77  DFGKGERGKNSTSEEDEPSFNEDGVDG-HHEGVRGKKGSPWQRVKWTDKMVRLLITAVSY 135
           +  K ER KNS S++DEPSF E+G DG H+E  R  KGSPWQRVKWTDKMV+LLITAVSY
Sbjct: 74  EQQKAEREKNSVSDDDEPSFTEEGGDGVHNEANRSTKGSPWQRVKWTDKMVKLLITAVSY 133

Query: 136 MGEDITSEXXXXXXRRKFTVLQKKGKWKSVSKVMAERGYRVSPQQCEDKFNDLNKRYKKL 195
           +G            RRKF VLQKKGKWKSVSKVMAERGY VSPQQCEDKFNDLNKRYKKL
Sbjct: 134 IG---DDSSIDSSSRRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKL 190

Query: 196 NDMLGRGTSCQVVENPALLDVIEFLSEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPH 255
           NDMLGRGTSCQVVENPALLD I +L++KEKDDVRKI+SSKHLFYEEMCSYHNGNRLHLPH
Sbjct: 191 NDMLGRGTSCQVVENPALLDSIGYLNDKEKDDVRKIMSSKHLFYEEMCSYHNGNRLHLPH 250

Query: 256 DPALQRSLQIALXXXXXXXXXXXXXXXXXGHXXXXXXXXXXXXXXFKENCSSHGDSR-GM 314
           D ALQRSLQ+AL                                 ++E   ++GD R   
Sbjct: 251 DLALQRSLQLALRSRDDHDNDDSRKHQMEDLDDEDHDGDGDEHDEYEEQHYAYGDCRVNH 310

Query: 315 YGPLGGSMKKLKQVQVQEDANTFGNSVNGQGYNKSSHPHGQVVHSDVNQVLPEGMRAAWL 374
           YG  GG +KK++     ED +   + VN    NK S P      +DVNQ   E  RA  +
Sbjct: 311 YGGGGGPLKKIRPSLSHEDGD-HPSHVNSLECNKVSLPQIPFSQADVNQGGAESGRAGSV 369

Query: 375 QKQWVESRSXXXXXXXXXXXXXXXXXXXXRLKWQRFSKKKDRELEKLSLENERMKLENER 434
           QKQW+ESR+                    R +WQRFSKK+D+ELE++ +ENERMKLEN+R
Sbjct: 370 QKQWMESRTLQLEEQKLQIQVELLELEKQRFRWQRFSKKRDQELERMRMENERMKLENDR 429

Query: 435 IALELKRKEMGAGL 448
           + LELK++E+G  L
Sbjct: 430 MGLELKQRELGVEL 443


>AT1G76870.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: sequence-specific DNA binding transcription factors
           (TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins
           in 76 species: Archae - 0; Bacteria - 2; Metazoa - 137;
           Fungi - 14; Plants - 127; Viruses - 0; Other Eukaryotes
           - 126 (source: NCBI BLink). | chr1:28857250-28858407
           FORWARD LENGTH=385
          Length = 385

 Score =  318 bits (816), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 196/426 (46%), Positives = 253/426 (59%), Gaps = 57/426 (13%)

Query: 27  QVHHHQGQHPHAMQQHQT--HPCQGSTVHVHDGFPRTMGTLQSSCDPTLSMSDFGKGERG 84
           QV   +   P+A+ Q+Q   HP          GF  TM T  ++ D            RG
Sbjct: 13  QVSSMRDLRPNAINQNQKQHHP----NSRQDSGFNNTMDTRHNNVD------------RG 56

Query: 85  KNSTSEEDEPSF-NEDGVDGHHEGVRGKKGSPWQRVKWTDKMVRLLITAVSYMGEDITSE 143
           K S SE+DE    + DG +      + K+ SPWQRVKW DKMV+L+ITA+SY+GED  S+
Sbjct: 57  KKSMSEDDELCLLSSDGQN------KSKENSPWQRVKWMDKMVKLMITALSYIGEDSGSD 110

Query: 144 XXXXXXRRKFTVLQKKGKWKSVSKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMLGRGT 203
                  +KF VLQKKGKW+SVSKVM ERGY VSPQQCEDKFNDLNKRYKKLN+MLGRGT
Sbjct: 111 -------KKFAVLQKKGKWRSVSKVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGT 163

Query: 204 SCQVVENPALLDVIEFLSEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSL 263
           SC+VVENP+LLD I++L+EKEKD+VR+I+SSKHLFYEEMCSYHNGNRLHLPHDPA+QRSL
Sbjct: 164 SCEVVENPSLLDKIDYLNEKEKDEVRRIMSSKHLFYEEMCSYHNGNRLHLPHDPAVQRSL 223

Query: 264 QIALXXXXXXXXXXXXXXXXXGHXXXXXXXXXXXXXXFKENCSSHGDSRGMYGPLGGSMK 323
            +                    H               +++  +  D      PL    K
Sbjct: 224 HLITLGSRDDHDNDE-------HGKHQNEDLDDDDDYEEDHDGALSDR-----PL----K 267

Query: 324 KLKQVQVQEDANTFGNSVNGQGYNKSSHPHGQVVHSDVNQ-VLPEGMRAAWLQKQWVESR 382
           +L+Q Q  ED          +GY+    P  Q   +DVN+ +  +  +AA LQ+Q +ES+
Sbjct: 268 RLRQSQSHEDVGH-----PNKGYDVPCLPRSQ---ADVNRGISLDSRKAAGLQRQQIESK 319

Query: 383 SXXXXXXXXXXXXXXXXXXXXRLKWQRFSKKKDRELEKLSLENERMKLENERIALELKRK 442
           S                    + KW+ FSK+++++L K+ +ENERMKLENER++LELKR 
Sbjct: 320 SLELEGRKLQIQAEMMELERQQFKWEVFSKRREQKLAKMRMENERMKLENERMSLELKRI 379

Query: 443 EMGAGL 448
           E+GA L
Sbjct: 380 ELGAKL 385


>AT3G10040.1 | Symbols:  | sequence-specific DNA binding
           transcription factors | chr3:3096580-3097875 REVERSE
           LENGTH=431
          Length = 431

 Score =  159 bits (403), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/229 (43%), Positives = 133/229 (58%), Gaps = 31/229 (13%)

Query: 32  QGQHPHAMQ---QHQTHPCQGSTVHVHDGFPRTMGTLQSS-CDPTLSMSDFGKGERGKNS 87
           Q QHPH        QT P   S ++ +   P+ M  +    CD      D  +G    + 
Sbjct: 31  QFQHPHPYTTSGDQQTQPPIKS-LYPYASKPKQMSPISGGGCD------DEDRGSGSGSG 83

Query: 88  TSEEDEPSFNEDGVDGHHEGVRGKKGSPWQRVKWTDKMVRLLITAVSYMGEDI------- 140
            + ED       G DG       +K S W R+KWTD MVRLLI AV Y+G++        
Sbjct: 84  CNPEDSA-----GTDGK------RKLSQWHRMKWTDTMVRLLIMAVFYIGDEAGLNDPVD 132

Query: 141 --TSEXXXXXXRRKFTVLQKKGKWKSVSKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDM 198
                           +LQKKGKWKSVS+ M E+G+ VSPQQCEDKFNDLNKRYK++ND+
Sbjct: 133 AKKKTGGGGGGGGGGGMLQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDI 192

Query: 199 LGRGTSCQVVENPALLDVIEFLSEKEKDDVRKILSSKHLFYEEMCSYHN 247
           LG+G +C+VVEN  LL+ ++ L+ K KD+V+K+L+SKHLF+ EMC+YHN
Sbjct: 193 LGKGIACRVVENQGLLESMDHLTPKLKDEVKKLLNSKHLFFREMCAYHN 241



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%)

Query: 370 RAAWLQKQWVESRSXXXXXXXXXXXXXXXXXXXXRLKWQRFSKKKDRELEKLSLENERMK 429
           ++ W +K+W+  +                     R+KW R+  KK+RE+EK  L+N+R +
Sbjct: 338 KSVWEKKEWIRRKMLEIEEKKIGYEWEGVEMEKQRVKWMRYRSKKEREMEKAKLDNQRRR 397

Query: 430 LENERIALELKRKEM 444
           LE ER+ L L+R E+
Sbjct: 398 LETERMILMLRRSEI 412