Miyakogusa Predicted Gene

Lj5g3v1949650.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1949650.1 Non Chatacterized Hit- tr|E1ZC18|E1ZC18_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,27.49,0.0000000000003,seg,NULL; PAP2_C,Sphingomyelin
synthase-like domain; coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL;
SPH,CUFF.56243.1
         (428 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G43580.1 | Symbols:  | Sphingomyelin synthetase family protei...   543   e-154

>AT1G43580.1 | Symbols:  | Sphingomyelin synthetase family protein |
           chr1:16410673-16412612 REVERSE LENGTH=421
          Length = 421

 Score =  543 bits (1398), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 273/422 (64%), Positives = 307/422 (72%), Gaps = 6/422 (1%)

Query: 10  NAGLGVAAMSYVAVDYLRHLSPTWHSRXXXXXXXXXXXXXXXRVPSYRHWSAEFRAAIPX 69
             GLG+AAMSYV +DY+R++SP WHSR               RV  Y+HWS E RAAIP 
Sbjct: 3   KGGLGIAAMSYVVIDYMRYVSPVWHSRLMPVLWSVLAIAVVTRVLFYKHWSKELRAAIPF 62

Query: 70  XXXXXXXXXXXXXEAISVRSVTAVLGLDWHRNTPPLPDTGQWFLLALNEKLPSVIVEILR 129
                        EA+ VRSVTAVLGLDWHR TPPLPDTGQWFLLALNE LP  +VEILR
Sbjct: 63  LGSIVFLLCALLFEALCVRSVTAVLGLDWHRETPPLPDTGQWFLLALNESLPGTLVEILR 122

Query: 130 ARIIGXXXXXXXXXXXAFSVLFDSVRAPGLGLGARYMFTMAIGRLLRAISFPSTILPSAR 189
           A IIG            FSV+FDSV+APGLGLGARY+FTM +GRLLRAI+F STILPSAR
Sbjct: 123 AHIIGLHHFLMLFIMLGFSVVFDSVKAPGLGLGARYIFTMGVGRLLRAITFVSTILPSAR 182

Query: 190 PWCASSRFR-VPSYPHRWAQKYYVPYASDHNAINQLIKLDKAYVDIGSPAADYQPEWGSA 248
           PWCAS+RF  VPS PHRWAQKYYVPYA+D  AI +L+  D AY D GS   DY+ +WGS 
Sbjct: 183 PWCASARFNNVPSQPHRWAQKYYVPYANDPAAIRKLLHWDAAYADPGSYIGDYRADWGSM 242

Query: 249 SFLIDFLRPTASEGPSWFSLLKKAGGGCNDLLYSGHMLVAVLTAMAWTEAYGGFSSALIW 308
           SFL +FLRP+ SEG SWF+LLKKAGGGCNDL+YSGHMLVAVLTAMAWTEAYGGFSSA+IW
Sbjct: 243 SFLSEFLRPSYSEGSSWFALLKKAGGGCNDLMYSGHMLVAVLTAMAWTEAYGGFSSAMIW 302

Query: 309 LFVAHSAQREVRERHHYSVDCIVAIYVGILLWKMTGFIWSQKDASRDRNLSKLEKIQSRL 368
           LFVAHSAQRE+RERHHY+VDCIVAIYVGILLWKMTGFIWS   A R    +KLEKIQ+ L
Sbjct: 303 LFVAHSAQREIRERHHYTVDCIVAIYVGILLWKMTGFIWS---AERKTKQTKLEKIQNSL 359

Query: 369 VQAAKDSDIEEVRXXXXXXXXXXXXXXXQTSI--KYSKLFSSATIVFALTIVILAFTLTS 426
           + AAKD DIE VR                  I  +   +F+ AT++  LTIVILA TLTS
Sbjct: 360 IHAAKDGDIETVRRLVEEIEVSSRVEKQSKVISNRTMTVFACATVITTLTIVILALTLTS 419

Query: 427 DG 428
           DG
Sbjct: 420 DG 421