Miyakogusa Predicted Gene

Lj5g3v1914150.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1914150.1 Non Chatacterized Hit- tr|J7I1Z2|J7I1Z2_ORYRU
Uncharacterized protein OS=Oryza rufipogon PE=4
SV=1,54.84,8e-17,seg,NULL,CUFF.56175.1
         (193 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22790.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   155   2e-38
AT1G22790.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   155   2e-38
AT1G34010.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    81   5e-16

>AT1G22790.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT1G34010.1); Has 35333 Blast
           hits to 34131 proteins in 2444 species: Archae - 798;
           Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
           531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
           BLink). | chr1:8070271-8071292 FORWARD LENGTH=216
          Length = 216

 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/196 (47%), Positives = 109/196 (55%), Gaps = 7/196 (3%)

Query: 1   MLLAVEXXXXXXXXXXXXXXXXXXXXXXQRDEDKPMRVAPWNQYQLVDQESDPDPQLQLA 60
           MLLAVE                       +D D+PMRV PWN YQ+VDQE + DP LQL 
Sbjct: 1   MLLAVEGGGLFSASASGYSKGLTLLFSGDKDVDRPMRVVPWNHYQVVDQEPEADPVLQLD 60

Query: 61  STKNRLSRGC-ASFVCFGRTSAGLDTPSPLKVGPAQQ-----PDVSPGPLVPTKGKDPSG 114
           S KNR+SRGC ASF CFG  SAGL+TPSPLKV P QQ            +V  KGKD   
Sbjct: 61  SIKNRVSRGCAASFSCFGGASAGLETPSPLKVEPVQQQHREISSPESVVVVSEKGKDQIS 120

Query: 115 NVXXXXXXNRRKVTLKSSIKRPQVNKSVPAEAANEHEPSGGRGVHNAGGQAERRKVQWTD 174
                      K++L+SS+KRP V +S   E   E+E     G    G  A RRKVQW D
Sbjct: 121 EADNGSSKEAFKLSLRSSLKRPSVAESRSLEDIKEYETLSVDGSDLTGDMA-RRKVQWPD 179

Query: 175 SCGSELVEIREFEPSE 190
           +CGSEL ++REFEPSE
Sbjct: 180 ACGSELTQVREFEPSE 195


>AT1G22790.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT1G34010.1); Has 67 Blast
           hits to 67 proteins in 12 species: Archae - 0; Bacteria
           - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0;
           Other Eukaryotes - 0 (source: NCBI BLink). |
           chr1:8070271-8071292 FORWARD LENGTH=216
          Length = 216

 Score =  155 bits (392), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/196 (47%), Positives = 109/196 (55%), Gaps = 7/196 (3%)

Query: 1   MLLAVEXXXXXXXXXXXXXXXXXXXXXXQRDEDKPMRVAPWNQYQLVDQESDPDPQLQLA 60
           MLLAVE                       +D D+PMRV PWN YQ+VDQE + DP LQL 
Sbjct: 1   MLLAVEGGGLFSASASGYSKGLTLLFSGDKDVDRPMRVVPWNHYQVVDQEPEADPVLQLD 60

Query: 61  STKNRLSRGC-ASFVCFGRTSAGLDTPSPLKVGPAQQ-----PDVSPGPLVPTKGKDPSG 114
           S KNR+SRGC ASF CFG  SAGL+TPSPLKV P QQ            +V  KGKD   
Sbjct: 61  SIKNRVSRGCAASFSCFGGASAGLETPSPLKVEPVQQQHREISSPESVVVVSEKGKDQIS 120

Query: 115 NVXXXXXXNRRKVTLKSSIKRPQVNKSVPAEAANEHEPSGGRGVHNAGGQAERRKVQWTD 174
                      K++L+SS+KRP V +S   E   E+E     G    G  A RRKVQW D
Sbjct: 121 EADNGSSKEAFKLSLRSSLKRPSVAESRSLEDIKEYETLSVDGSDLTGDMA-RRKVQWPD 179

Query: 175 SCGSELVEIREFEPSE 190
           +CGSEL ++REFEPSE
Sbjct: 180 ACGSELTQVREFEPSE 195


>AT1G34010.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G22790.2); Has 74 Blast hits to 74 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:12359821-12360838 REVERSE
           LENGTH=182
          Length = 182

 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 31/165 (18%)

Query: 29  QRDEDKPMRVAP-WNQYQLVDQESDPDPQLQLASTKNRLSRGCASFVCFGRTSAGLDTPS 87
           Q+ E KP++V+  WN Y LV +  D D   +L S+KN LS  C S +CFGR S  L++  
Sbjct: 29  QKTEQKPIKVSSQWNHYHLVLE--DSDTGFRLDSSKNWLSSACTSLICFGRKSERLESEG 86

Query: 88  PLKVGPAQQPDVSPGPLVPTKGKDPSGNVXXXXXXNRRKVTLKSSIKRPQVNKSVPAEAA 147
                P+ +                  +       NR    LKSS+K+   +  V  +  
Sbjct: 87  KKDEAPSVE------------------DYNNCEVTNR--FALKSSLKKRSFSDVVIGD-- 124

Query: 148 NEHEPSGGRGVHNAGGQAERRKVQWTDSCGSELVEIREFEPSEGD 192
              +     GV +     +RRKVQW D+CG E+ E+REFEPSE D
Sbjct: 125 ---DDVSRDGVVD---HIDRRKVQWPDTCGIEIAEVREFEPSEVD 163