Miyakogusa Predicted Gene

Lj5g3v1914050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1914050.1 Non Chatacterized Hit- tr|I1N283|I1N283_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,34.65,4e-19,F_box_assoc_1: F-box protein interaction domain,F-box
associated interaction domain; FBOX,F-box doma,CUFF.56157.1
         (225 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23880.1 | Symbols:  | F-box and associated interaction domai...    79   3e-15
AT3G16210.1 | Symbols:  | F-box family protein | chr3:5494533-54...    59   2e-09

>AT3G23880.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:8622061-8623155
           REVERSE LENGTH=364
          Length = 364

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 13/195 (6%)

Query: 33  QFKCVCKSWKTLISSPQFVKDHLRISISNTSTTHQQLVY-FTGHEPFKMETCSVQSLIEN 91
           +FKCVC SW++LIS   F   H  I  ++ +TT  +  Y       + +++C + SL   
Sbjct: 33  RFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGVITTSRYHLKSCCIHSLYNA 92

Query: 92  PSA-PPETLSFMMNPKYRFIVGSCNGLLCL-CDYDGCFRLINPCTRLESNISPFIGLIGL 149
            +    E    ++   Y  +VG+C+GL+C   DYD    L NP  +L+  +S       L
Sbjct: 93  STVYVSEHDGELLGRDYYQVVGTCHGLVCFHVDYDKSLYLWNPTIKLQQRLSSS----DL 148

Query: 150 IGVLYPVVKHYGFGYDQVNDNYKVILF------CKDVTRLHTFGSNSWTTIRYTLLNLEF 203
                  V  YGFGYD+  D+YKV+         K  T++++     W +       +  
Sbjct: 149 ETSDDECVVTYGFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVV 208

Query: 204 YDKGMEGKLVNGTLN 218
            DK   G  +NGTLN
Sbjct: 209 ADKSRSGIYINGTLN 223


>AT3G16210.1 | Symbols:  | F-box family protein |
           chr3:5494533-5495615 REVERSE LENGTH=360
          Length = 360

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 37/200 (18%)

Query: 33  QFKCVCKSWKTLISSPQFVKDHLRISISNTSTTHQQLVYF---TGHEPF---KMETCSVQ 86
           +F+CVCK+W+ LI+ P F + +  +S +   + + +  Y     G  P    K++    Q
Sbjct: 24  RFRCVCKTWRDLINDPGFTETYRDMSPAKFVSFYDKNFYMLDVEGKHPVITNKLDFPLDQ 83

Query: 87  SLIENPSAPPETLSFMMNPKYRFIVGSCNGLLCLCDYDGCFRLINPCTRLESNISPFIGL 146
           S+I+  +                 V  C+G LC+   +    + NP ++ +  I P  G+
Sbjct: 84  SMIDESTC----------------VLHCDGTLCVTLKNHTLMVWNPFSK-QFKIVPNPGI 126

Query: 147 IGLIGVLYPVVKHYGFGYDQVNDNYKVILFCK--DVTRLHTFG--SNSW-TTIRYTLLNL 201
                +L       GFGYD V+D+YKV+ F    DV+  H F   + SW  ++R +  + 
Sbjct: 127 YQDSNIL-------GFGYDPVHDDYKVVTFIDRLDVSTAHVFEFRTGSWGESLRISYPDW 179

Query: 202 EFYDKGMEGKLVNGTLNWLA 221
            + D+   G  ++  L W+A
Sbjct: 180 HYRDR--RGTFLDQYLYWIA 197