Miyakogusa Predicted Gene
- Lj5g3v1913930.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1913930.1 tr|G7JX91|G7JX91_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_5g057710 PE=4
SV=1,32.43,0.0006,FBOX,F-box domain, cyclin-like; A Receptor for
Ubiquitination Targets,F-box domain, cyclin-like; F-b,CUFF.56179.1
(366 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23880.1 | Symbols: | F-box and associated interaction domai... 114 1e-25
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ... 89 5e-18
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ... 89 5e-18
AT4G22390.1 | Symbols: | F-box associated ubiquitination effect... 89 5e-18
AT3G06240.1 | Symbols: | F-box family protein | chr3:1887336-18... 86 6e-17
AT3G07870.1 | Symbols: | F-box and associated interaction domai... 76 3e-14
AT3G16210.1 | Symbols: | F-box family protein | chr3:5494533-54... 72 5e-13
AT1G33530.1 | Symbols: | F-box family protein | chr1:12159884-1... 65 5e-11
AT1G47790.1 | Symbols: | F-box and associated interaction domai... 63 4e-10
AT1G11270.2 | Symbols: | F-box and associated interaction domai... 62 4e-10
AT1G11270.1 | Symbols: | F-box and associated interaction domai... 62 4e-10
AT1G19160.1 | Symbols: | F-box family protein | chr1:6614162-66... 57 1e-08
AT1G32600.1 | Symbols: | F-box associated ubiquitination effect... 57 3e-08
AT3G23260.1 | Symbols: | F-box and associated interaction domai... 56 4e-08
AT1G09650.1 | Symbols: | F-box and associated interaction domai... 54 1e-07
AT3G10240.1 | Symbols: | F-box and associated interaction domai... 54 2e-07
AT3G21120.1 | Symbols: | F-box and associated interaction domai... 53 3e-07
AT3G62380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box asso... 52 1e-06
AT4G04690.1 | Symbols: | F-box and associated interaction domai... 50 2e-06
AT4G21240.1 | Symbols: | F-box and associated interaction domai... 50 3e-06
AT4G38870.1 | Symbols: | F-box and associated interaction domai... 49 4e-06
AT1G54640.1 | Symbols: | F-box family protein-related | chr1:20... 49 7e-06
>AT3G23880.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:8622061-8623155
REVERSE LENGTH=364
Length = 364
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/350 (27%), Positives = 158/350 (45%), Gaps = 34/350 (9%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDH-LRNSMSDTNMTRQQLVSFAKNESNKIETCSVQ 92
V+SL RF CVC SW+ LI F H L S + + +++C +
Sbjct: 28 VKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGVITTSRYHLKSCCIH 87
Query: 93 SLFENPSAPPEILSFRVESKHQY-IVGSCYGLMCL-CDHNGYFRLWNPSTRLA---SVRS 147
SL+ + + + Y +VG+C+GL+C D++ LWNP+ +L S
Sbjct: 88 SLYNASTVYVSEHDGELLGRDYYQVVGTCHGLVCFHVDYDKSLYLWNPTIKLQQRLSSSD 147
Query: 148 PRINIVKLFTRYGFGYDQVNDKYKVL------YTRGFETRVHTFGTNCWTTIHTSPRARP 201
+ + YGFGYD+ D YKV+ + ET++++ W + + P
Sbjct: 148 LETSDDECVVTYGFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVV 207
Query: 202 EWSDEEEGKFVSGTLNWLAPKRDCIIS---FDLENETYDEVLLPLQLHDDSPRNHVLDAL 258
G +++GTLNW A + +D+ + + E+ P+ L L
Sbjct: 208 VADKSRSGIYINGTLNWAATSSSSSWTIISYDMSRDEFKELPGPVCC-GRGCFTMTLGDL 266
Query: 259 SNCLCL-SYSNNIHCAVWLMKKYGIQESWTKLISIPRWKLQIPKRPRCVRLSFHLRPLCI 317
CL + Y + VW+MK++G SW+KL+SIP L+ +RPL I
Sbjct: 267 RGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLSIP-------------GLTDFVRPLWI 313
Query: 318 SENVVVLVRSNDGHVVMFNTNNGKLKFPKIKGRIS--HDMHIYHECLVSP 365
S+ +VVL+ G + ++N +NG+ +P + IS D +Y + +VSP
Sbjct: 314 SDGLVVLLEFRSG-LALYNCSNGRFHYP-VSNSISGCRDAKVYLKTMVSP 361
>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 154/356 (43%), Gaps = 62/356 (17%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQLVSFAKNESNKIETCSVQS 93
++L+R + K LI+ P F++ HL + + L + S +++ S
Sbjct: 18 AKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGALRLYSVDLDSLDSVS 77
Query: 94 LFENP---SAPPEILSFRVESKHQYIVGSCYGLMCLCDHNGYFRLWNPSTRL------AS 144
E+P P E+ GS GL+ L + ++NPSTR +S
Sbjct: 78 DVEHPMKRGGPTEVF------------GSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPSS 125
Query: 145 VRSPRINIVKLFTRYGFGYDQVNDKYKVLYTRGF--------------ETRVHTFGTNCW 190
+ P + + + YG GYD V+D YKV+ F E +V + N W
Sbjct: 126 IDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSW 185
Query: 191 TTIHTSPRARPEW--------SDEEEGKFVSGTLNWLAPKR------DCIISFDLENETY 236
I + + G +L+W+ P+R + I+ FDL E +
Sbjct: 186 KRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEF 245
Query: 237 DEVLLPLQLHDDSPRNHV-LDALSNCLCL--SYSNNIHCAVWLMKKYGIQESWTKLISIP 293
+ V P + + + + + L CLCL +Y + + VW+MK+Y +++SWTK+ ++
Sbjct: 246 EIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQS-YVDVWMMKEYNVRDSWTKVFTV- 303
Query: 294 RWKLQIPKRPRCVRLSFHLRPLCISEN-VVVLVRSNDGHVVMFNTNNGKLKFPKIK 348
++P+ V+ ++RPL S++ VL+ N+ +V F+ + K+ +IK
Sbjct: 304 -------QKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIK 352
>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
domains-containing protein | chr4:7441815-7443157
FORWARD LENGTH=413
Length = 413
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 85/356 (23%), Positives = 154/356 (43%), Gaps = 62/356 (17%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQLVSFAKNESNKIETCSVQS 93
++L+R + K LI+ P F++ HL + + L + S +++ S
Sbjct: 18 AKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGALRLYSVDLDSLDSVS 77
Query: 94 LFENP---SAPPEILSFRVESKHQYIVGSCYGLMCLCDHNGYFRLWNPSTRL------AS 144
E+P P E+ GS GL+ L + ++NPSTR +S
Sbjct: 78 DVEHPMKRGGPTEVF------------GSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPSS 125
Query: 145 VRSPRINIVKLFTRYGFGYDQVNDKYKVLYTRGF--------------ETRVHTFGTNCW 190
+ P + + + YG GYD V+D YKV+ F E +V + N W
Sbjct: 126 IDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSW 185
Query: 191 TTIHTSPRARPEW--------SDEEEGKFVSGTLNWLAPKR------DCIISFDLENETY 236
I + + G +L+W+ P+R + I+ FDL E +
Sbjct: 186 KRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEF 245
Query: 237 DEVLLPLQLHDDSPRNHV-LDALSNCLCL--SYSNNIHCAVWLMKKYGIQESWTKLISIP 293
+ V P + + + + + L CLCL +Y + + VW+MK+Y +++SWTK+ ++
Sbjct: 246 EIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQS-YVDVWMMKEYNVRDSWTKVFTV- 303
Query: 294 RWKLQIPKRPRCVRLSFHLRPLCISEN-VVVLVRSNDGHVVMFNTNNGKLKFPKIK 348
++P+ V+ ++RPL S++ VL+ N+ +V F+ + K+ +IK
Sbjct: 304 -------QKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIK 352
>AT4G22390.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:11813757-11815074 REVERSE
LENGTH=402
Length = 402
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 147/357 (41%), Gaps = 69/357 (19%)
Query: 50 LIDSPQFVKDHLRNSMSDTNMTRQQLVSFAKNESNKIETCSVQSLFENPSAPPEILSFRV 109
LIDSP+FV HLR + T + L+ + + T + S EN S P L
Sbjct: 34 LIDSPEFVSSHLRRRLE----TGEHLMILLRG-PRLLRTVELDSP-ENVSDIPHPLQ--- 84
Query: 110 ESKHQYIVGSCYGLMCLCDHNGYFRLWNPSTR------LASVRSPRINIVKLFTRYGFGY 163
+ GS G++ LC+ ++NPSTR + + P +I + + YG GY
Sbjct: 85 AGGFTEVFGSFNGVIGLCNSPVDLAIFNPSTRKIHRLPIEPIDFPERDITREYVFYGLGY 144
Query: 164 DQVNDKYKVL-------------YTRGFETRVHTFGTNCWTTI---------------HT 195
D V D +KV+ + E +V + N W + H
Sbjct: 145 DSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKRVCLMFEFQILWISYYYHL 204
Query: 196 SPRARPEWSDEEEGKFVSGTLNWLAPKRDCIISF------DLENETYDEVLLPLQLHDDS 249
PR G V+ L+W+ P+R +I+F DL ++ + P +L+ +
Sbjct: 205 LPR-------RGYGVVVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIED 257
Query: 250 PRNHVLDALSNCLCLS-YSNNIHCAVWLMKKYGIQESWTKLISIPRWKLQIPKRPRCVRL 308
N + L C+CL Y H VW++K+Y +SWTKL +P +P V
Sbjct: 258 --NMDIGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTKLYRVP--------KPESVES 307
Query: 309 SFHLRPLCISEN--VVVLVRSNDGHVVMFNTNNGKLKFPKIKGRISHDMHIYHECLV 363
+RPL S++ ++L +N +++ F+ + L I+ S I LV
Sbjct: 308 VEFIRPLICSKDRSKILLEINNAANLMWFDLESQSLTTAGIECDSSFTADILVSSLV 364
>AT3G06240.1 | Symbols: | F-box family protein |
chr3:1887336-1888619 FORWARD LENGTH=427
Length = 427
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 169/392 (43%), Gaps = 81/392 (20%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDHL----RNSMSDTNMTRQQLVS--------FAKN 81
+S+ RF CV K + L P F K HL RN S ++ R+ +VS F
Sbjct: 50 AKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNE-SVRSLHRKLIVSSHNLYSLDFNSI 108
Query: 82 ESNKIETCSVQ---SLFENPSAPPEILSFRVESKHQY--------------------IVG 118
+ +V+ L ++PS E++ V H Y IVG
Sbjct: 109 GDGIRDLAAVEHNYPLKDDPSIFSEMIRNYV-GDHLYDDRRVMLKLNAKSYRRNWVEIVG 167
Query: 119 SCYGLMCLCDHNGYFRLWNPST----------RLASVRSPRINIVKLFTRYGFGYDQVND 168
S GL+C+ G L+NP+T R SV R N F YGFG+D + D
Sbjct: 168 SSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDN----FQTYGFGFDGLTD 223
Query: 169 KYKVLYTRG-----FETRVHTFGTNCWTTIHTSPRARPEWSDEEEGKFVSGTLNWLAPK- 222
YK++ + V++ + W I + S G +G ++W+ +
Sbjct: 224 DYKLVKLVATSEDILDASVYSLKADSWRRICNLNYEHNDGS-YTSGVHFNGAIHWVFTES 282
Query: 223 ---RDCIISFDLENETYDEVLLPLQLHDDSPR--NHVLDALSNCLCLSYS-NNIHCAVWL 276
+ +++FD++ E + E+ +P + D S R N V+ +L+ LC+ S ++H +W+
Sbjct: 283 RHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSCYDVHDDIWV 342
Query: 277 MKKYGIQESWTKLISIPRWKLQIPKRPRCVRLSFHLRPLCISENVVVLVRSNDGHVVMFN 336
M +YG +SW+++ R L ++PLC ++N ++ DG +V++N
Sbjct: 343 MSEYGEAKSWSRI--------------RINLLYRSMKPLCSTKNDEEVLLELDGDLVLYN 388
Query: 337 --TN-NGKLKFPKIKGRISHDMHIYHECLVSP 365
TN + L +K + + Y E L+SP
Sbjct: 389 FETNASSNLGICGVKLSDGFEANTYVESLISP 420
>AT3G07870.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:2510871-2512124
FORWARD LENGTH=417
Length = 417
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 125/276 (45%), Gaps = 55/276 (19%)
Query: 116 IVGSCYGLMCLCD--HNGYFRLWNPSTRLASVRSP----RINIVKLFTRYGFGYDQVNDK 169
+VGSC GL+CL D +N L+NP T S+ P + + +L +GFG+ ++ +
Sbjct: 119 VVGSCNGLLCLSDSLYNDSLYLYNPFTT-NSLELPECSNKYHDQELV--FGFGFHEMTKE 175
Query: 170 YKVL---YTRGF-------------------ETRVHTFGTNC------WTTIHTSPRARP 201
YKVL Y RG E ++ T + W ++ +P
Sbjct: 176 YKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFV 235
Query: 202 EWSDEEEGKFVSGTLNWLA-PKRDC----IISFDLENETYDEVLLPLQLHDDSPRNHVLD 256
+ S E V+G L+++ P+R +SFDLE+E + E+ P + NH L
Sbjct: 236 KRSSEA---LVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKP-DCGGLNRTNHRLV 291
Query: 257 ALSNCLC-LSYSNNIHCAVWLMKKYGIQESWTKLISI----PRWKLQIPKRPRCVRLSFH 311
L CLC + Y N +W+MK YG++ESW K SI P+ Q RP + +
Sbjct: 292 NLKGCLCAVVYGNYGKLDIWVMKTYGVKESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAE 351
Query: 312 ----LRPLCISENVVVLVRSNDGHVVMFNTNNGKLK 343
+R LC+ EN +L+ +V ++ GK K
Sbjct: 352 NGKVVRVLCLLENGEILLEYKSRVLVAYDPKLGKFK 387
>AT3G16210.1 | Symbols: | F-box family protein |
chr3:5494533-5495615 REVERSE LENGTH=360
Length = 360
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 116/267 (43%), Gaps = 24/267 (8%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQLVSFAKNESNKIETCSVQS 93
++ L RF CVCK+W+ LI+ P F + + +M+ + VSF ++
Sbjct: 19 MKDLARFRCVCKTWRDLINDPGFTETY-------RDMSPAKFVSFYDKNFYMLDVEGKHP 71
Query: 94 LFENPSAPPEILSFRVESKHQYIVGSCYGLMCLCDHNGYFRLWNPSTRLASVRSPRINIV 153
+ N P S ES V C G +C+ N +WNP ++ + P I
Sbjct: 72 VITNKLDFPLDQSMIDEST---CVLHCDGTLCVTLKNHTLMVWNPFSKQFKI-VPNPGIY 127
Query: 154 KLFTRYGFGYDQVNDKYKVL--YTRGFETRVHTFGTNCWTTIHTSPRARPEWS-DEEEGK 210
+ GFGYD V+D YKV+ R + H F + + + P+W + G
Sbjct: 128 QDSNILGFGYDPVHDDYKVVTFIDRLDVSTAHVFEFRTGSWGESLRISYPDWHYRDRRGT 187
Query: 211 FVSGTLNWLAPKRDC---IISFDLENETYDEVLLPLQLHDDSPRNHVLDALSNCLCLSYS 267
F+ L W+A + I+ F+L Y + LPL +++ + L S LC++
Sbjct: 188 FLDQYLYWIAYRSSADRFILCFNLSTHEYRK--LPLPVYNQGVTSSWLGVTSQKLCITEY 245
Query: 268 N--NIHCAVWLMKKYGIQESWTKLISI 292
+ +M+K G SW+K+IS+
Sbjct: 246 EMCKKEIRISVMEKTG---SWSKIISL 269
>AT1G33530.1 | Symbols: | F-box family protein |
chr1:12159884-12161314 FORWARD LENGTH=441
Length = 441
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/267 (27%), Positives = 119/267 (44%), Gaps = 23/267 (8%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQL-VSFAKNESNKIETCSVQ 92
V+ L+R + K WK LI+S + HLR + ++ V + ++S I+ S +
Sbjct: 111 VKYLVRLKSISKGWKSLIESDHLAEKHLRLLEKKYGLKEIKITVERSTSKSICIKFFSRR 170
Query: 93 SLFENPSAPPEILSFRVESKHQYIVGSCYGLMCLCDHNG-YFRLWNPSTRLASVRSPRIN 151
S ++ + L RV GSC GL+C+ + + Y L NP T + +P
Sbjct: 171 SGMNAINSDSDDL-LRVP-------GSCNGLVCVYELDSVYIYLLNPMTGVTRTLTPPRG 222
Query: 152 IVKLFTRYGFGYDQVNDKYKVLYTRGFE---TRVHTFGTNCWTTIHTSPRARPEW---SD 205
KL GFG D V YKV+ GF+ T V TN W + + P +
Sbjct: 223 -TKL--SVGFGIDVVTGTYKVMVLYGFDRVGTVVFDLDTNKWRQRYKTAGPMPLSCIPTP 279
Query: 206 EEEGKFVSGTLNW-LAPKRDCIISFDLENETYDEVLLPLQLHD-DSPRNHV-LDALSNCL 262
E FV+G+L W LA I+ DL E + + P + D D ++ + +L + L
Sbjct: 280 ERNPVFVNGSLFWLLASDFSEILVMDLHTEKFRTLSQPNDMDDVDVSSGYIYMWSLEDRL 339
Query: 263 CLS-YSNNIHCAVWLMKKYGIQESWTK 288
C+S +H VW++ + + E W +
Sbjct: 340 CVSNVRQGLHSYVWVLVQDELSEKWER 366
>AT1G47790.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:17600004-17601173
REVERSE LENGTH=389
Length = 389
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 28/228 (12%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQLVSFAKNESNKIETCSV-- 91
V+S++RF CV K W +I P F+K + S TRQ L+ F +S+K+ S+
Sbjct: 39 VKSVVRFRCVSKLWSSIITDPYFIKTYETQS-----STRQSLL-FCFKQSDKLFVFSIPK 92
Query: 92 QSLFENPSAPPEILSFRVESKHQYI----VGSCYGLMCLCDHNGYFRLWNPSTR-LASVR 146
N S+ I F+V+ ++ S +GL+C +WNPS R ++
Sbjct: 93 HHYDSNSSSQAAIDRFQVKLPQEFSYPSPTESVHGLICF-HVLATVIVWNPSMRQFLTLP 151
Query: 147 SPRINIVKLFTRYGFGYDQVNDKYKVL----YTRGFETRVHTFGT--NCWTTIHTSPRAR 200
PR + +L GYD + K+KV+ E +V T G+ W T+ T + R
Sbjct: 152 KPRKSWKELTV--FLGYDPIEGKHKVVCLPRNRTCDECQVLTLGSAQKSWRTVKTKHKHR 209
Query: 201 PEWSDEEEGKFVSGTLNWLA----PKRDCIISFDLENETYDEVLLPLQ 244
+++ G+ + G + ++A + CI+SF +++E +D + LPL+
Sbjct: 210 S--TNDTWGRCIKGVVYYIAYVYHTRVWCIMSFHVKSEKFDMIKLPLE 255
>AT1G11270.2 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:3785715-3786653
REVERSE LENGTH=312
Length = 312
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 111/273 (40%), Gaps = 38/273 (13%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQLVSFAKNESNKIETCSVQS 93
V SLLRF CV WK I+S F + L M ++ +VSFA +E S
Sbjct: 49 VESLLRFKCVSNQWKSTIESQCFQERQLIRRM-ESRGPDVLVVSFADDEDKYGRKAVFGS 107
Query: 94 LFENPSAPPEILSFRVESKHQYIV-GSCYGLMCL-CDHNGYFRLWNPSTRLASVRSPRIN 151
+ +FR + H I GSC GL+C+ C ++ + NP+T+ P N
Sbjct: 108 SI--------VSTFRFPTLHTLICYGSCEGLICIYCVYSPNIVV-NPATKWHR-SCPLSN 157
Query: 152 IVKLFT-------------RYGFGYDQVNDKYKVLYTRGFET---------RVHTFGTNC 189
+ + + FG D++N YK ++ V F N
Sbjct: 158 LQQFLDDKFEKKEYDFPTPKLAFGKDKLNGTYKQVWLYNSSEFRLDDVTTCEVFDFSNNA 217
Query: 190 WTTIHTSPRARPEWSDEEEGKFVSGTLNWLAPKRDC-IISFDLENETYDEVLLPLQLHDD 248
W +H P + +D ++ + G+++WL ++ I+SF L ET+ + L +
Sbjct: 218 WRYVH--PASPYRINDYQDPVYSDGSVHWLTEGKESKILSFHLHTETFQVLCEAPFLRER 275
Query: 249 SPRNHVLDALSNCLCLSYSNNIHCAVWLMKKYG 281
P + L N LC+S N +W + G
Sbjct: 276 DPVGDSMCILDNRLCVSEINGPAQLIWSLDSSG 308
>AT1G11270.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:3785715-3786653
REVERSE LENGTH=312
Length = 312
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 111/273 (40%), Gaps = 38/273 (13%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQLVSFAKNESNKIETCSVQS 93
V SLLRF CV WK I+S F + L M ++ +VSFA +E S
Sbjct: 49 VESLLRFKCVSNQWKSTIESQCFQERQLIRRM-ESRGPDVLVVSFADDEDKYGRKAVFGS 107
Query: 94 LFENPSAPPEILSFRVESKHQYIV-GSCYGLMCL-CDHNGYFRLWNPSTRLASVRSPRIN 151
+ +FR + H I GSC GL+C+ C ++ + NP+T+ P N
Sbjct: 108 SI--------VSTFRFPTLHTLICYGSCEGLICIYCVYSPNIVV-NPATKWHR-SCPLSN 157
Query: 152 IVKLFT-------------RYGFGYDQVNDKYKVLYTRGFET---------RVHTFGTNC 189
+ + + FG D++N YK ++ V F N
Sbjct: 158 LQQFLDDKFEKKEYDFPTPKLAFGKDKLNGTYKQVWLYNSSEFRLDDVTTCEVFDFSNNA 217
Query: 190 WTTIHTSPRARPEWSDEEEGKFVSGTLNWLAPKRDC-IISFDLENETYDEVLLPLQLHDD 248
W +H P + +D ++ + G+++WL ++ I+SF L ET+ + L +
Sbjct: 218 WRYVH--PASPYRINDYQDPVYSDGSVHWLTEGKESKILSFHLHTETFQVLCEAPFLRER 275
Query: 249 SPRNHVLDALSNCLCLSYSNNIHCAVWLMKKYG 281
P + L N LC+S N +W + G
Sbjct: 276 DPVGDSMCILDNRLCVSEINGPAQLIWSLDSSG 308
>AT1G19160.1 | Symbols: | F-box family protein |
chr1:6614162-6615214 REVERSE LENGTH=350
Length = 350
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 94/219 (42%), Gaps = 30/219 (13%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQLVSFAKNESNKIETCSVQS 93
V+SL RF+CV K +I S F+ N TR+ V FA ++N + S
Sbjct: 16 VKSLARFLCVSKRCYSIIRSRHFI-----NLYQSRASTRESRVMFAFRDTNTFFRWNFFS 70
Query: 94 LFENPSAPPEILSFRVESKHQYIVGSCY-GLMCLCDHNGYFRLW--NPSTRLASVRSPRI 150
L + PS+ I S Y + C GL+C+ +H FRLW NP T+ ++ P
Sbjct: 71 LSQPPSSVTNIDS------TSYCMPVCVNGLICV-EHM--FRLWICNPVTKKITL-FPDC 120
Query: 151 NIVKLFTRYGFGYDQVNDKYKVLY------TRGFETRVHTFG-TNCWTTIHTSPRARPEW 203
K FT + GYD +N +YKVLY + V TFG W I
Sbjct: 121 GPRKQFTTWYMGYDPINYQYKVLYLSREHLIAPYIVEVFTFGDEGSWRMIEADENFH--- 177
Query: 204 SDEEEGKFVSGTLNWLAPKRDC--IISFDLENETYDEVL 240
S E G G L + A D I+ FD+ E + + +
Sbjct: 178 SPETRGVCTHGVLYYGAYTGDGAKIVRFDVRTEKFGKFI 216
>AT1G32600.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:11794802-11795683 FORWARD
LENGTH=293
Length = 293
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 119 SCYGLMCLC-DHNGYFRLWNP-STRLASVRSPRINIVKLFTRYGFGYDQVNDKYKVLYTR 176
SC G++CL N +W P ST+ R P I + GFGYD+V D YK++
Sbjct: 47 SCRGVICLTRKDNNELAIWKPTSTKFK--RVPMIKRGQTQNLLGFGYDRVLDDYKIVTII 104
Query: 177 GFETRVHTFGTNCWTTIHTSPRARPEWSDEEEGKFVSGTLNWLA---PKRDCIISFDLEN 233
+T + TF + W P + + E G V + W+A K I+ FD N
Sbjct: 105 DKKTYIFTFKESSWRESKLIPSSDC-FFKERTGTVVDNCMYWIANRFNKEKFILCFDFVN 163
Query: 234 ETYDEVLLPLQL 245
E Y ++ +P+ L
Sbjct: 164 EEYSKLNVPMML 175
>AT3G23260.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:8313334-8314422
FORWARD LENGTH=362
Length = 362
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 121/317 (38%), Gaps = 55/317 (17%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQLVSFAKNESNKIETCSVQS 93
+ L R K W L + F K H N T++ L+ K+ + + ++
Sbjct: 20 AKYLARLRSTSKQWNALSKTGSFAKKH------SANATKEPLIIMLKDSRVYLASVNLHG 73
Query: 94 LFENPSAPPEILS-FRVESKHQYIVGSCYGLMCLCD-HNGYFRLWNPSTRLASVRSPRIN 151
+ N + E+ S ++ H V C GL+ LC +WNP + A + PR +
Sbjct: 74 VHNNVAQSFELGSRLYLKDPHISNVFHCDGLLLLCSIKENTLEVWNPCSGEAKLIKPRHS 133
Query: 152 IVKLFTRYGFGYDQVND--KYKVL------YTRG---FETRVHTFGTNCW----TTIHTS 196
K Y GYD + KYKVL + +G E ++ F + W T S
Sbjct: 134 YYKESDFYALGYDNKSSCKKYKVLRVISQVHVQGDFKIEYEIYDFTNDSWRVHGATTELS 193
Query: 197 PRARPEWSDEEEGKFVSGTLNWLAPKR----DCIISFDLENETYDEVLLPLQLHDDSPRN 252
R + S V G+ W+ R +SFD E + + LP P
Sbjct: 194 IRQKHPVS-------VKGSTYWVVRNRYFPYKYFLSFDFSTERFQSLSLP------QPFP 240
Query: 253 HVLDALS----NCLCL-SYSN----NIHCAVWLMKKYGIQESWTKLISIPRWKLQIPKRP 303
+++ LS LCL Y N + VW+ G SW+K ++I QI K P
Sbjct: 241 YLVTDLSVVREEQLCLFGYYNWSTTSEDLNVWVTTSLGSVVSWSKFLTI-----QIIK-P 294
Query: 304 RCVRLSFHLRPLCISEN 320
R + + L +N
Sbjct: 295 RVDMFDYGMSFLVDEQN 311
>AT1G09650.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr1:3125978-3127126
FORWARD LENGTH=382
Length = 382
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 114/282 (40%), Gaps = 32/282 (11%)
Query: 37 LLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQLVSFAKNESNKIETCSVQSLFE 96
LLRF V K WK I+SP F + N +VS + +++IE + L
Sbjct: 30 LLRFKAVSKQWKSTIESPFFQRRQFTQRQQSGN-PDVLMVSRCADINSEIEALTTLVLGS 88
Query: 97 NPSA---PPEILSFRVESKHQYIVGSCYGLMCLCDHNGYFRLWNPSTR------------ 141
+ S P + ++ SC GL+CL D ++NP+TR
Sbjct: 89 SSSVKIPTPWEEEEEEDKEYSVSQDSCDGLVCLFDKFKSGFVFNPATRWYHPLPLCQLQQ 148
Query: 142 -LASVRSPRINIVKLFTRYGFGYDQVNDKYKVLYTR-----GFET----RVHTFGTNCWT 191
L ++ ++ +R GFG D++ YK ++ G E V F TN W
Sbjct: 149 LLIAIGDGFYDLGYRVSRLGFGKDKLTGTYKPVWLYNSIEIGLENATTCEVFDFSTNAWR 208
Query: 192 TIHTSPRARPEWSDEEEGKFVSGTLNWLAPKRDC-IISFDLENETYDEVLLPLQLHDDSP 250
+ SP A V G+L+W + I+SFDL ET+ +V+ +
Sbjct: 209 --YVSPAAPYRIVGCPAPVCVDGSLHWFTECEETKILSFDLHTETF-QVVSKAPFANVDG 265
Query: 251 RNHVLDALSNCLCLSYSNNIHCAVWLMKKYGIQESWTKLISI 292
+ V+ L N LC+S + +W ++W K+ SI
Sbjct: 266 FDIVMCNLDNRLCVSEMKLPNQVIWSFNSG--NKTWHKMCSI 305
>AT3G10240.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:3166698-3167867
FORWARD LENGTH=389
Length = 389
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 32/228 (14%)
Query: 35 RSLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQLVSFAKNESNKIETC----- 89
+S+ RF CV K W + P F+ N + T + + L+ F NE + +
Sbjct: 42 KSVARFRCVSKPWSSITTEPYFI-----NLL--TTRSPRLLLCFKANEKFFVSSIPQHRQ 94
Query: 90 SVQSLFENPSAPPEI----LSFRVESKHQYIVGSCYGLMCLCDHNGYFRLWNPSTR-LAS 144
+ ++ ++ S I + F E + S GL+C + + +WNPSTR L
Sbjct: 95 TFETWNKSHSYSQLIDRYHMEFSEEMNYFPPTESVNGLICFQE-SARLIVWNPSTRQLLI 153
Query: 145 VRSPRINIVKLFTRYGFGYDQVNDKYKVL---YTRGFET-RVHTFGT--NCWTTIHTSPR 198
+ P N L GYD V K+KV+ ++ ++T RV T G+ W T+ T +
Sbjct: 154 LPKPNGNSNDL--TIFLGYDPVEGKHKVMCMEFSATYDTCRVLTLGSAQKLWRTVKTHNK 211
Query: 199 ARPEWSDEEEGKFVSGTLNWLAPKRD----CIISFDLENETYDEVLLP 242
R ++ D G+ ++G + +A +D ++SFD+ +E +D + LP
Sbjct: 212 HRSDYYD--SGRCINGVVYHIAYVKDMCVWVLMSFDVRSEIFDMIELP 257
>AT3G21120.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr3:7406326-7407429
FORWARD LENGTH=367
Length = 367
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 88/230 (38%), Gaps = 29/230 (12%)
Query: 36 SLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMT------RQQLVSF---AKNESNKI 86
SL RF C+ W L+ F K H + R LVS N +N
Sbjct: 19 SLARFRSTCRRWNALVVDGSFAKKHYAYGPRQYPIVIMLIEFRVYLVSIDLHGINNNNGA 78
Query: 87 ETCSVQSLFENPSAPPEILSFRVESKHQYIVGSCYGLMCLCDHNGYFRLWNPSTRLASVR 146
+ + F + P S V+ ++ + C GL+ C + +WNP +
Sbjct: 79 PSAKLTGQF-SLKDPLSNSSEEVDIRNAF---HCDGLLLCCTKDRRLVVWNPCSGETKWI 134
Query: 147 SPRINIVKLFTRYGFGYDQVNDKYKVLYTR------GFETRVHTFGTNCWTTIHTSPRAR 200
PR N K Y GYD + YK+L E+ V+ F ++ W ++ +
Sbjct: 135 QPR-NSYKESDLYALGYDNRSSSYKILRMHPVGNPFHIESEVYDFASHSWRSVGVTTDFH 193
Query: 201 PEWSDEEEGKFVSGTLNWLAPKRD--------CIISFDLENETYDEVLLP 242
+ ++E G V GT W A +D ++SFD E + + LP
Sbjct: 194 IQ-TNESYGMNVKGTTYWFALSKDWWSSDDRRFLLSFDFSRERFQCLPLP 242
>AT3G62380.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box
associated interaction domain (InterPro:IPR017451); BEST
Arabidopsis thaliana protein match is: F-box family
protein (TAIR:AT1G71320.1); Has 422 Blast hits to 419
proteins in 26 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink). |
chr3:23083609-23084852 REVERSE LENGTH=325
Length = 325
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 86/202 (42%), Gaps = 30/202 (14%)
Query: 116 IVGSCYGLMCLCDHNGYFRLWNPSTRLASVRSPRINIVKLFT-----------RYGFGYD 164
I+G C G++C+ D GY L NP+TR + SP ++ +T GFG D
Sbjct: 74 IMGYCNGIVCIYDL-GYIYLINPATRKLRILSPE--FLREYTGRTGWSNDLPINVGFGRD 130
Query: 165 QVNDKYKV----LYTRGFETRVHTFGTNCWTTIHTSPRARPEWSDEEEGKFVSGTLNWLA 220
V YKV L+ R F N P + + +++ F +G+L WL
Sbjct: 131 MVTGTYKVILMYLFDRNFVKTEALNLKNGERRYVYFPISYGQLGNDKRSIFANGSLYWL- 189
Query: 221 PKRDC---------IISFDLENETYDEVLLPLQLHDDSPRNHVLDALSNCLCLS-YSNNI 270
PK D + + DL ET+ V LP + ++ L +L + LC+S N
Sbjct: 190 PKPDVDFYTNQLIKLAAIDLHTETFRYVPLP-SWYTKYCKSVYLWSLKDSLCVSDVLQNP 248
Query: 271 HCAVWLMKKYGIQESWTKLISI 292
VW +++ W K+ S+
Sbjct: 249 SVDVWSLQQEEPSVKWEKMFSV 270
>AT4G04690.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr4:2373999-2375135
REVERSE LENGTH=378
Length = 378
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 93/224 (41%), Gaps = 36/224 (16%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQLVSFAKNESNKIETCSVQS 93
SL RF CK W +I S +F+ +HL +S ++ + +++ +I +
Sbjct: 25 AESLNRFKSTCKQWYGIITSKRFMYNHLDHS-------PERFIRIDDHKTVQIMD-PMTG 76
Query: 94 LFENPSAPPEILSFRVESKHQYIVGSCYGLM-CLCDHNGYFR-------LWNPSTRLASV 145
+F + P FR +V C GLM C+C + Y R +WNP T+
Sbjct: 77 IFSDSPVPD---VFRSPHSFASMV-HCDGLMLCICSDSSYERTREANLAVWNPVTKKIKW 132
Query: 146 RSPRINIVKLFTRYGFGYDQV-NDKYKVLYTRG------FETRVHTFGTNCWTTIHTSPR 198
P + + +G GYD + YK++ G E ++ F ++ W T+ T
Sbjct: 133 IEPLDSYYET-DYFGIGYDNTCRENYKIVRFSGPMSFDDTECEIYEFKSDSWRTLDTK-- 189
Query: 199 ARPEWS--DEEEGKFVSGTLNWLA-PKRDCIISFDLENETYDEV 239
W + G V G + W+A K I+ FD ET+ V
Sbjct: 190 ---YWDVYTQCRGVSVKGNMYWIADTKEKFILRFDFSMETFKNV 230
>AT4G21240.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr4:11322411-11323664
FORWARD LENGTH=417
Length = 417
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 114/279 (40%), Gaps = 41/279 (14%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQLVSFAKNESNKIETCSVQS 93
+S +RF V K W + P F++ S + + TR L++ K ++ Q
Sbjct: 50 AKSAVRFRIVSKLWLSITTRPYFIR-----SFAFPSSTRLCLMACVKARDMRLFISLHQ- 103
Query: 94 LFENPSAPPEILSFRVES-KHQYI---VGSCYGLMCLCDHNGYFRLWNPSTRL-ASVRSP 148
+ + + ++S KH Y S GL+C D +WNPS R ++ P
Sbjct: 104 --HDDGSYAHVDRCEIKSPKHDYYNPSSESVNGLVCFGDFYNIV-VWNPSMRQHVTLPEP 160
Query: 149 RI-NIVKLFTRYGFGYDQVNDKYKVLYTRGFETRVH-----TFG-TNCWTTIHTSPRARP 201
+ + V+ F R GYD V DKYKVL G+ H T G W I SP P
Sbjct: 161 KPHSTVRYFIRSCLGYDPVEDKYKVLSISGYHNGNHDPLVFTLGPQESWRVIQNSPLDIP 220
Query: 202 -EWSDEEEGKFVSGTLNWLAPKR----------DCIISFDLENETYDEVLLPLQLHDDSP 250
G ++G + + A R + ++SFD+ E ++ + P D +
Sbjct: 221 LPTGGSRVGTCINGHVYYEAQIRFKVDDIFNFENILMSFDVRYEKFNTIKKPA---DPTL 277
Query: 251 RNHVLDALSNC--LCLSYSNNIHCAVWLMKKYGIQESWT 287
RN +L+ C YS+ W++ G ++ W+
Sbjct: 278 RNFMLNYQGKLAWFCSDYSS---IRFWVLDD-GDKQEWS 312
>AT4G38870.1 | Symbols: | F-box and associated interaction
domains-containing protein | chr4:18132583-18133863
REVERSE LENGTH=426
Length = 426
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 105/238 (44%), Gaps = 39/238 (16%)
Query: 34 VRSLLRFICVCKSWKILIDSPQFVKDHLRNSMSDTNMTRQQLVSF---AKNESNKIETCS 90
++ L+RF+CV K W +I P F+K L S+ R + + F A++ + +
Sbjct: 67 LKPLIRFLCVSKLWASIIRDPYFMKLFLNESLK-----RPKSLVFVFRAQSLGSIFSSVH 121
Query: 91 VQSLFE----NPSAPPEILSFRV---ESKHQYIVGSCYGLMCLCDHNGYFRLWNPSTRLA 143
++S E + S+ +++ V + I S +GL+C + ++NP TR
Sbjct: 122 LKSTREISSSSSSSSASSITYHVTCYTQQRMTISPSVHGLICYGPPSSLV-IYNPCTR-R 179
Query: 144 SVRSPRINIVKLFTRYGFGYDQVNDKYKVL-YTRGF-----------ETRVHTFGT--NC 189
S+ P+I + GYD ++ YKV+ TRG E +V T GT +
Sbjct: 180 SITLPKIKAGRRAINQYIGYDPLDGNYKVVCITRGMPMLRNRRGLAEEIQVLTLGTRDSS 239
Query: 190 WTTIHTSPRARPEWSDEEEGKFVSGTLNWLA-----PKRDCIISFDLENETYDEVLLP 242
W IH P S E ++G L + A I+SFD+ +E +D + +P
Sbjct: 240 WRMIHD---IIPPHSPVSEELCINGVLYYRAFIGTKLNESAIMSFDVRSEKFDLIKVP 294
>AT1G54640.1 | Symbols: | F-box family protein-related |
chr1:20403892-20404807 REVERSE LENGTH=245
Length = 245
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 120 CYGLMCLC-DHNGYFRLWNPSTRLASVRSPRINIVKLFTRYGFGYDQVNDKYKVLYTRGF 178
C G+MCL N +W P + R P + + GFGYD++++ YK++ GF
Sbjct: 48 CRGMMCLTLKENNDLAIWKPGSEEFK-RIPMVIPGQTTNLLGFGYDRISNDYKIVTKIGF 106
Query: 179 ETRVHTFGTNCW 190
+T ++ F +CW
Sbjct: 107 KTYIYAFKESCW 118