Miyakogusa Predicted Gene

Lj5g3v1903700.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1903700.2 CUFF.56144.2
         (310 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71720.1 | Symbols:  | Nucleic acid-binding proteins superfam...   446   e-126
AT5G30510.1 | Symbols: RPS1, ARRPS1 | ribosomal protein S1 | chr...   109   2e-24
AT3G23700.1 | Symbols:  | Nucleic acid-binding proteins superfam...    66   4e-11

>AT1G71720.1 | Symbols:  | Nucleic acid-binding proteins superfamily
           | chr1:26983744-26985893 FORWARD LENGTH=500
          Length = 500

 Score =  446 bits (1148), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/316 (71%), Positives = 267/316 (84%), Gaps = 9/316 (2%)

Query: 1   MLTKEVLPLYGKEMENLLFDVEKDTENFMAQGKIGIVKNDEALSGVPVP-----GRPVVE 55
           MLTKE+LPLY KE++ LL D++ D E F+  GK+GIVK+D+   GV +      GRPVVE
Sbjct: 185 MLTKEILPLYDKELDYLLCDLKYDAEEFLVNGKMGIVKDDD--EGVEIAEFARQGRPVVE 242

Query: 56  TGTILFAEVLGRTLSGRPLLSTRRFFRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLTRI 115
            GT++FAEVLGRTLSGRPLLS+RR+FRRIAWHRVRQI+QLNEPIEV+ITEWNTGGLLTRI
Sbjct: 243 IGTVVFAEVLGRTLSGRPLLSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRI 302

Query: 116 EGLRAFLAKAELVKRVNTFTELKENVGRRMYVQITRIDEDKNSLMLSEKKAWEKLFLREG 175
           EGLRAF+ K ELVK+VNTFTELKENVGRR  VQITR++EDKN L+LSEK AWEKL+LREG
Sbjct: 303 EGLRAFIPKQELVKKVNTFTELKENVGRRFLVQITRLNEDKNDLILSEKVAWEKLYLREG 362

Query: 176 TLLDGTVKKIFPYGAQIKIGVSNRSGLLHISNISRAEITSVSDVLSVDENVKVLVVKSAF 235
           TLL+GTV KI PYGAQ+K+G S+RSGLLHISNI+R  I SVSDVL VDE+VKVLVVKS F
Sbjct: 363 TLLEGTVVKILPYGAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVKSLF 422

Query: 236 PDKISLSIAALESEPGLFLSNKERVFLEAEMMAKKYKQKLPPAITTKRLDPLP-TSALP- 293
           PDKISLSIA LESEPGLF+S++E+VF EAE MAKKY++K+P   T+   D  P TS+ P 
Sbjct: 423 PDKISLSIADLESEPGLFISDREKVFTEAEEMAKKYREKMPLVATSPISDRPPITSSFPQ 482

Query: 294 FENEALYANWKWFKFE 309
            ++E +YANW+WFKFE
Sbjct: 483 GKDEEIYANWEWFKFE 498


>AT5G30510.1 | Symbols: RPS1, ARRPS1 | ribosomal protein S1 |
           chr5:11619262-11621223 REVERSE LENGTH=416
          Length = 416

 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 126/232 (54%), Gaps = 12/232 (5%)

Query: 74  LLSTRRFFRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLTRIEGLRAFLAKAELVKRVNT 133
           LLS R     +AW R RQ+Q  +  ++ ++   N GGL+  +EGLR F+       ++++
Sbjct: 165 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVP----FSQISS 220

Query: 134 FTELKENVGRRMYVQITRIDEDKNSLMLSEKKAW--EKLFLREGTLLDGTVKKIFPYGAQ 191
               +E + + + ++   +DE++  L+LS +KA    +  L  G+++ G V+ + PYGA 
Sbjct: 221 KAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAF 280

Query: 192 IKIGVSNRSGLLHISNISRAEITSVSDVLSVDENVKVLVVKSAFP-DKISLSIAALESEP 250
           I IG  N  GLLH+S IS   ++ ++ VL   + +KV+++       ++SLS   LE  P
Sbjct: 281 IDIGGIN--GLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 338

Query: 251 GLFLSNKERVFLEAEMMAKKYKQKLPPAITTKRLDPL---PTSALPFENEAL 299
           G  + N + VF +AE MA+ ++Q++  A    R D L   P S L   ++ +
Sbjct: 339 GDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGI 390


>AT3G23700.1 | Symbols:  | Nucleic acid-binding proteins superfamily
           | chr3:8531689-8533742 REVERSE LENGTH=392
          Length = 392

 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 19/182 (10%)

Query: 86  WHRVRQIQQLNEPIEVRITEWNTGGLLTRIEGLRAFLAKAELV---------KRVNTFTE 136
           W   +   +  +  E  +  +N GGLL R   L  FL   +L          K ++    
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIA- 155

Query: 137 LKENVGRRMYVQITRIDEDKNSLMLSEKKA-WEKLF--LREGTLLDGTVKKIFPYGAQIK 193
            K  VG ++ V++ + DE+   L+LSEK A W K    +  G + +G V  +  YGA I 
Sbjct: 156 -KTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIH 214

Query: 194 I----GVSNRSGLLHISNISRAEITSVSDVLSVDENVKVLVVK-SAFPDKISLSIAALES 248
           +    G+ + +GL+H+S +S   +  V DVL   + V+V+V        +I+LSI  LE 
Sbjct: 215 LRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLED 274

Query: 249 EP 250
           +P
Sbjct: 275 DP 276