Miyakogusa Predicted Gene

Lj5g3v1903700.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1903700.1 CUFF.56144.1
         (352 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71720.1 | Symbols:  | Nucleic acid-binding proteins superfam...   240   1e-63

>AT1G71720.1 | Symbols:  | Nucleic acid-binding proteins superfamily
           | chr1:26983744-26985893 FORWARD LENGTH=500
          Length = 500

 Score =  240 bits (613), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 148/299 (49%), Positives = 179/299 (59%), Gaps = 59/299 (19%)

Query: 48  FAVLFNPHSSKKVSILSD------THFTFCSRNGGFDGISSDLSPEANDD--GTQELELL 99
           F V  +P + +  SI  +          FCSR         D+S   N      +E+ELL
Sbjct: 47  FHVTLSPFAFRGFSICREFAVRGAYGIRFCSRE--------DVSGVGNGGIVAEEEIELL 98

Query: 100 NKPYPVRVAEELASEAEMDQEKPSQQEALAPFLKFFK----GSDSMEEVEEDGDVLQVSE 155
           NKP P+  +E   S       K      L PFLKFFK    G     EV ++ D + V  
Sbjct: 99  NKPNPLPKSENEESG------KADDDAILEPFLKFFKPEEEGEGIESEVSDETDRVSVE- 151

Query: 156 EKXXXXXXXXXXXXXXXXXXXXXXXXXXPKPGDFVVGVVVSGNEYKLDINVGADLLGTML 215
                                       PKPGDFVVGVVVSGNE KLD+N+GAD+LGTML
Sbjct: 152 -------------------------YYDPKPGDFVVGVVVSGNENKLDVNIGADMLGTML 186

Query: 216 TKEVLPLYGKEMENLLFDVEKDTENFMAQGKIGIVKNDEALSGVPVP-----GRPVVETG 270
           TKE+LPLY KE++ LL D++ D E F+  GK+GIVK+D+   GV +      GRPVVE G
Sbjct: 187 TKEILPLYDKELDYLLCDLKYDAEEFLVNGKMGIVKDDD--EGVEIAEFARQGRPVVEIG 244

Query: 271 TILFAEVLGRTLSGRPLLSTRRFFRRIAWHRVRQIQQLNEPIEVRITEWNTGGLLTRIE 329
           T++FAEVLGRTLSGRPLLS+RR+FRRIAWHRVRQI+QLNEPIEV+ITEWNTGGLLTRIE
Sbjct: 245 TVVFAEVLGRTLSGRPLLSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIE 303