Miyakogusa Predicted Gene
- Lj5g3v1889580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1889580.1 Non Chatacterized Hit- tr|I1NH63|I1NH63_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.50116
PE,81.55,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; PABP-1234:
polyadenylate binding protein, human ty,,CUFF.56121.1
(658 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 639 0.0
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 638 0.0
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 638 0.0
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 564 e-161
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 556 e-158
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 548 e-156
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 548 e-156
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 363 e-100
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 343 2e-94
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 324 1e-88
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 122 7e-28
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 119 9e-27
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 118 1e-26
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 117 3e-26
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 114 2e-25
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 113 5e-25
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 112 8e-25
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 104 2e-22
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 102 1e-21
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 101 2e-21
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 97 4e-20
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 94 4e-19
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 93 6e-19
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 92 2e-18
AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 90 5e-18
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 89 1e-17
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 88 2e-17
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 8e-16
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 82 2e-15
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 7e-15
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 80 7e-15
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 78 2e-14
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 5e-14
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 74 3e-13
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 73 5e-13
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 72 8e-13
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 9e-13
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 72 9e-13
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 72 1e-12
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 72 1e-12
AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 4e-12
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 4e-12
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 6e-12
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 8e-12
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 5e-11
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 67 5e-11
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 5e-11
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 66 8e-11
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 8e-11
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 9e-11
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 9e-11
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 66 1e-10
AT2G47310.1 | Symbols: | flowering time control protein-related... 65 1e-10
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 2e-10
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 64 3e-10
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 4e-10
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 64 4e-10
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 4e-10
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 64 5e-10
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 63 5e-10
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 5e-10
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 63 6e-10
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 9e-10
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 9e-10
AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:48... 62 1e-09
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-09
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 61 2e-09
AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 61 2e-09
AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 61 2e-09
AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 61 2e-09
AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-1803098... 61 2e-09
AT3G19350.1 | Symbols: MPC | maternally expressed pab C-terminal... 60 3e-09
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 5e-09
AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-bindi... 60 5e-09
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 60 6e-09
AT5G03580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 6e-09
AT1G29400.2 | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10... 59 1e-08
AT1G29400.1 | Symbols: AML5, ML5 | MEI2-like protein 5 | chr1:10... 59 1e-08
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-08
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-08
AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 | chr1:... 59 1e-08
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-08
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-08
AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 | chr5:... 58 2e-08
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-08
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-08
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-08
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 3e-08
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 3e-08
AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 | chr1:... 57 3e-08
AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 4e-08
AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 4e-08
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 57 5e-08
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 57 5e-08
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 6e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 6e-08
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 6e-08
AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting d... 57 6e-08
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 56 6e-08
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 56 6e-08
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 56 6e-08
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 6e-08
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 8e-08
AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 56 1e-07
AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 1... 55 1e-07
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation... 55 1e-07
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-07
AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20... 55 2e-07
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 55 2e-07
AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 | chr1:20... 55 2e-07
AT5G61960.2 | Symbols: AML1, ML1 | MEI2-like protein 1 | chr5:24... 54 2e-07
AT5G61960.1 | Symbols: AML1, ML1 | MEI2-like protein 1 | chr5:24... 54 2e-07
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 54 3e-07
AT5G44200.2 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |... 54 3e-07
AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |... 54 3e-07
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 54 5e-07
AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 | chr1:20... 54 5e-07
AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation... 53 7e-07
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 7e-07
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 9e-07
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 9e-07
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 9e-07
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 9e-07
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 52 9e-07
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 52 1e-06
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 52 1e-06
AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 2e-06
AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 2e-06
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 52 2e-06
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 2e-06
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 2e-06
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 51 2e-06
AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 | chr5:2294248-22... 51 2e-06
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 51 3e-06
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 3e-06
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 50 4e-06
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 50 4e-06
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 50 4e-06
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 50 4e-06
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 50 4e-06
AT5G59950.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-06
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 5e-06
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 5e-06
AT5G59950.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 5e-06
AT5G59950.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 5e-06
AT5G59950.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 5e-06
AT5G37720.1 | Symbols: ALY4 | ALWAYS EARLY 4 | chr5:14981805-149... 50 5e-06
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 50 5e-06
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 5e-06
AT5G59950.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 5e-06
AT5G37720.2 | Symbols: ALY4 | ALWAYS EARLY 4 | chr5:14981805-149... 50 5e-06
AT5G02530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 6e-06
AT5G02530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 6e-06
AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing fa... 50 6e-06
AT1G66260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 8e-06
AT1G66260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 8e-06
AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850077-1... 49 8e-06
AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 49 8e-06
AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 | chr2:17850632-1... 49 8e-06
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/623 (54%), Positives = 431/623 (69%), Gaps = 38/623 (6%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
N+SLY GDL+ V EA L+DLF +A +VS+RVCRDQ +RS LGYAY+NF+N DA A+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRS-LGYAYINFSNPNDAYRAM 106
Query: 98 ELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCK 157
E LN+TP+ +PIRIM S RDPS R SG N+FIKNLD SIDNKAL +TF++FG +LSCK
Sbjct: 107 EALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCK 166
Query: 158 VAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSP-- 215
VA+D +G+SKGYGFVQF+ +E+AQ AI+KLNGML+NDK+V+VG F+R QER R +P
Sbjct: 167 VAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTP 226
Query: 216 KFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAV 275
+FTNVYVKNL + +++L++ F FGVI+SA VM+D +GNS+CFGFVNFE ++AA+AV
Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAV 286
Query: 276 EKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNIND 335
EK+NG ++ DD VLY GRAQ+K+ERE ELR KFEQERI+R+EK QGANLY+KNLDD+++D
Sbjct: 287 EKMNGISLGDD-VLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDD 345
Query: 336 EKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
EKLK++FSE+G +TS KVML+ G S+G GFVA+S PEEA +A++EMNGK++GRKPLY+A
Sbjct: 346 EKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIA 405
Query: 396 VAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYH---AGTPRLAPQQLYYGQGSPGFM 452
+AQRKEDR+A LQA F+QI+ PG M+ G+H G PQ +Y GQ +
Sbjct: 406 LAQRKEDRRAHLQALFSQIRAPGPMS-------GFHHPPGGPMPGPPQHMYVGQNGASMV 458
Query: 453 PPQPAGYGFQQQMLPGMRPGVAP-NFIMPYXXXXXXXXXXXXXXXXXXNLQSGQPN---- 507
P QP GYGFQ Q +PGMRPG P NFI+PY + G N
Sbjct: 459 PSQPIGYGFQPQFMPGMRPGSGPGNFIVPY------PLQRQPQTGPRMGFRRGATNVQQH 512
Query: 508 ----QVPHRNSNQGFRYM--ATN-RNGMDXXXXXXXXXXXXXXXXFDGYGVTAAPAENQR 560
Q+ HRN + G RYM A+N RNGMD D ++ A
Sbjct: 513 IQQQQLMHRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPI-DASSISHQKA---- 567
Query: 561 PAVXXXXXXXXXXXXXPENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLI 620
P + P ++ MLGE LYPLVE P H AKVTGMLLEMDQ+E++HL+
Sbjct: 568 PLLPISKLTSSLASASPADRTRMLGEQLYPLVERHEP-LHVAKVTGMLLEMDQAEILHLM 626
Query: 621 ESPEDLKMKVSEALRVLRDAAAP 643
ESPE LK KVSEAL VLR + P
Sbjct: 627 ESPEALKSKVSEALDVLRLSVDP 649
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/628 (53%), Positives = 431/628 (68%), Gaps = 21/628 (3%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
N+SLYVGDL+ +VNE+ L DLF+Q+A + ++RVCRD T RS LGYAYVNFAN +DA+ A+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRS-LGYAYVNFANPEDASRAM 116
Query: 98 ELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCK 157
E LN+ P+ +PIRIM S RDPS R SG NVFIKNLD SIDNKAL++TF++FG +LSCK
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 176
Query: 158 VAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGS--P 215
VA+D G+SKGYGFVQF+ +E AQ AI+KLNGML+NDK+V+VG FVR Q+R R+ P
Sbjct: 177 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 236
Query: 216 KFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAV 275
FTNVYVKNL + TD++LK+ F +G I+SA VMKD +GNS+ FGFVNF SP++AA AV
Sbjct: 237 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 296
Query: 276 EKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNIND 335
EK+NG ++ +D VLY GRAQ+K++RE ELR KFEQERISR+EKLQG+NLY+KNLDD++ND
Sbjct: 297 EKMNGISLGED-VLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVND 355
Query: 336 EKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
EKLK++FSE+G +TS KVM++S G S+G GFVA+S PEEA AM EMNGK++GRKPLYVA
Sbjct: 356 EKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 415
Query: 396 VAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYH---AGTPRLAPQQ-LYYGQGSPGF 451
+AQRKE+R+A LQ+ F QI+ PG M+P+P+ + G+H G P P ++ G G
Sbjct: 416 LAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGL 475
Query: 452 MPPQPAGYGFQQQMLPGMRPGVA-PNFIMPYXXXXXXXXXXXXXXXXXXNLQSGQPNQVP 510
+P QP GYG+Q Q +PGMRPG PNF+MP+ N Q Q
Sbjct: 476 VPSQPMGYGYQVQFMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQQ 535
Query: 511 HRNSNQGFRYM---ATNRNGMDXXXXXXXXXXXXXXXXFDGYGVTAAPAENQRPA-VXXX 566
N R+M RNGM+ AP + +P +
Sbjct: 536 MLQQNAS-RFMGGAGNRRNGMEASAPQGIIPLPLNASA----NSHNAPQRSHKPTPLTIS 590
Query: 567 XXXXXXXXXXPENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDL 626
P+ MLG+HLYPLVE P + AKVTGMLLEMDQ+E++HL+ESPE L
Sbjct: 591 KLASDLALASPDKHPRMLGDHLYPLVEQQEP-ANAAKVTGMLLEMDQAEILHLLESPEAL 649
Query: 627 KMKVSEALRVLRDAAAPG--SEVSDQLG 652
K KVSEAL VLR +A P S V DQ
Sbjct: 650 KAKVSEALDVLRRSADPAAVSSVDDQFA 677
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/628 (53%), Positives = 431/628 (68%), Gaps = 21/628 (3%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
N+SLYVGDL+ +VNE+ L DLF+Q+A + ++RVCRD T RS LGYAYVNFAN +DA+ A+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRS-LGYAYVNFANPEDASRAM 116
Query: 98 ELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCK 157
E LN+ P+ +PIRIM S RDPS R SG NVFIKNLD SIDNKAL++TF++FG +LSCK
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 176
Query: 158 VAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGS--P 215
VA+D G+SKGYGFVQF+ +E AQ AI+KLNGML+NDK+V+VG FVR Q+R R+ P
Sbjct: 177 VAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVP 236
Query: 216 KFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAV 275
FTNVYVKNL + TD++LK+ F +G I+SA VMKD +GNS+ FGFVNF SP++AA AV
Sbjct: 237 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAV 296
Query: 276 EKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNIND 335
EK+NG ++ +D VLY GRAQ+K++RE ELR KFEQERISR+EKLQG+NLY+KNLDD++ND
Sbjct: 297 EKMNGISLGED-VLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVND 355
Query: 336 EKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
EKLK++FSE+G +TS KVM++S G S+G GFVA+S PEEA AM EMNGK++GRKPLYVA
Sbjct: 356 EKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 415
Query: 396 VAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYH---AGTPRLAPQQ-LYYGQGSPGF 451
+AQRKE+R+A LQ+ F QI+ PG M+P+P+ + G+H G P P ++ G G
Sbjct: 416 LAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGL 475
Query: 452 MPPQPAGYGFQQQMLPGMRPGVA-PNFIMPYXXXXXXXXXXXXXXXXXXNLQSGQPNQVP 510
+P QP GYG+Q Q +PGMRPG PNF+MP+ N Q Q
Sbjct: 476 VPSQPMGYGYQVQFMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQQ 535
Query: 511 HRNSNQGFRYM---ATNRNGMDXXXXXXXXXXXXXXXXFDGYGVTAAPAENQRPA-VXXX 566
N R+M RNGM+ AP + +P +
Sbjct: 536 MLQQNAS-RFMGGAGNRRNGMEASAPQGIIPLPLNASA----NSHNAPQRSHKPTPLTIS 590
Query: 567 XXXXXXXXXXPENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDL 626
P+ MLG+HLYPLVE P + AKVTGMLLEMDQ+E++HL+ESPE L
Sbjct: 591 KLASDLALASPDKHPRMLGDHLYPLVEQQEP-ANAAKVTGMLLEMDQAEILHLLESPEAL 649
Query: 627 KMKVSEALRVLRDAAAPG--SEVSDQLG 652
K KVSEAL VLR +A P S V DQ
Sbjct: 650 KAKVSEALDVLRRSADPAAVSSVDDQFA 677
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 564 bits (1453), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/448 (61%), Positives = 343/448 (76%), Gaps = 7/448 (1%)
Query: 36 FANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAAN 95
F N SLYVGDL+ NV ++QL+D F Q+ +V++RVCRD R SLGY YVNF N QDAA
Sbjct: 33 FGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAAR 92
Query: 96 ALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLS 155
A++ LN+ P+ GKPIR+M+S RDPS+R+SG N+FIKNLD SID+KALHDTF++FG ++S
Sbjct: 93 AIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVS 152
Query: 156 CKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSP 215
CKVAVD+SGQSKGYGFVQ+ N+E+AQ AI KLNGML+NDK+VYVG F+R QER
Sbjct: 153 CKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKT 212
Query: 216 KFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAV 275
KFTNVYVKNL+ES TD+DLK F +G ITSA VMKD G SK FGFVNFE+ D AA AV
Sbjct: 213 KFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAV 272
Query: 276 EKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNIND 335
E LNG DDK Y GRAQ+K+ERE ELR ++EQ +K Q +NLYVKNLD +I+D
Sbjct: 273 ESLNGHKF-DDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISD 331
Query: 336 EKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
EKLK++FS FGT+TS KVM D G SKGSGFVAF+TPEEA +AM++++GK++ KPLYVA
Sbjct: 332 EKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVA 391
Query: 396 VAQRKEDRKARLQAHFAQIQVPGGMAP-LPAGIPGYHAGTPRLAPQQLYYGQGSPGFMPP 454
+AQRKEDR+ RLQA F+Q++ P M P + +P Y G P + QQ++YGQ P +PP
Sbjct: 392 IAQRKEDRRVRLQAQFSQVR-PVAMQPSVGPRMPVYPPGGPGIG-QQMFYGQAPPAMIPP 449
Query: 455 QPAGYGFQQQMLPGMRP--GVAPNFIMP 480
QP GYG+QQQ++PGMRP G P+F MP
Sbjct: 450 QP-GYGYQQQLVPGMRPGGGPVPSFFMP 476
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 62/81 (76%), Gaps = 3/81 (3%)
Query: 577 PENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSEALRV 636
PE QR MLGE LYPLVE + + AKVTGMLLEMDQ+EV+HL+ESPE LK KV+EA+ V
Sbjct: 552 PEQQRTMLGEVLYPLVEQVEA-ESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDV 610
Query: 637 LRDAAAPGSEVSDQLGSFSLN 657
LR AA G+ ++QL S +L+
Sbjct: 611 LRSVAAGGA--TEQLASLNLS 629
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 556 bits (1434), Expect = e-158, Method: Compositional matrix adjust.
Identities = 315/643 (48%), Positives = 407/643 (63%), Gaps = 47/643 (7%)
Query: 37 ANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANA 96
A SLYVGDL+ NV ++QLYD F+++ Q+VS+RVCRD +SLGY YVN++N DA A
Sbjct: 44 ALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKA 103
Query: 97 LELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSC 156
++ LN++ +NGK IRI +S RD S R+SG N+F+KNLD S+DNK LH+ F+ G ++SC
Sbjct: 104 MQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSC 163
Query: 157 KVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPK 216
KVA D GQS+GYGFVQFD +++A+NAI KLNG ++NDK+++VG F+R +ER A K
Sbjct: 164 KVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMK 223
Query: 217 FTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVE 276
FTNVYVKNLSE+ TD++LK F +G I+SA VM+D +G S+CFGFVNFE+P+ AA AVE
Sbjct: 224 FTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVE 283
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
LNG DDK Y G+AQ+K+ERE EL ++EQ K G NLYVKNLDD + DE
Sbjct: 284 ALNGKKF-DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDE 342
Query: 337 KLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAV 396
KL++LF+EFGTITS KVM D G SKGSGFVAFS EA++ + EMNGK+VG KPLYVA+
Sbjct: 343 KLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVAL 402
Query: 397 AQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPG-------YHAGTPRLAPQQLYYGQGSP 449
AQRKE+R+A+LQA F+Q++ PA IPG + G P L QQ++YGQG P
Sbjct: 403 AQRKEERRAKLQAQFSQMR--------PAFIPGVGPRMPIFTGGAPGLG-QQIFYGQGPP 453
Query: 450 GFMPPQPAGYGFQQQMLPGMRPGVAPNFIM-PYXXXXXXXXXXXXXXXXXXNLQSGQPNQ 508
+P QP G+G+Q Q++PGMRP +M P Q P
Sbjct: 454 PIIPHQP-GFGYQPQLVPGMRPAFFGGPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYM 512
Query: 509 VPHRN-SNQGFRYMATNRNGMDXXXXXXXXXXXXXXXXFDGYGVTAAPAENQRP---AVX 564
P +G+RY + RN D G V A N P +
Sbjct: 513 QPQMMPRGRGYRYPSGGRNMPD--------------GPMPGGMVPVAYDMNVMPYSQPMS 558
Query: 565 XXXXXXXXXXXXPENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPE 624
P QR +LGE LYPLV+ + ++H AKVTGMLLEMDQ+EV+HL+ESPE
Sbjct: 559 AGQLATSLANATPAQQRTLLGESLYPLVDQIE-SEHAAKVTGMLLEMDQTEVLHLLESPE 617
Query: 625 DLKMKVSEALRVLRDAAAPGSE---------VSDQLGSFSLNE 658
L KVSEAL VLR+ P S+ SD L S S+N+
Sbjct: 618 ALNAKVSEALDVLRNVNQPSSQGSEGNKSGSPSDLLASLSIND 660
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 32 GGGPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQ 91
GG F +LYV +L+ V + +L +LF++ I S +V RD + +S G +V F+ A
Sbjct: 321 GGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSG-TSKGSGFVAFSAAS 379
Query: 92 DAANALELLNFTPVNGKPIRIMFSQRDPSIR 122
+A+ L +N V GKP+ + +QR R
Sbjct: 380 EASRVLNEMNGKMVGGKPLYVALAQRKEERR 410
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 548 bits (1412), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/446 (61%), Positives = 342/446 (76%), Gaps = 8/446 (1%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
SLYVGDL+ V ++QL++ F+Q Q+VS+RVCRD T R SLGY YVN+A QDA+ AL
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 98 ELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCK 157
LNF +NG+ IR+M+S RDPS+RKSG N+FIKNLD SID+KALH+TF+AFGP+LSCK
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 158 VAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKF 217
VAVD SGQSKGYGFVQ+D DEAAQ AI+KLNGML+NDK+VYVG FV +R + KF
Sbjct: 164 VAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKF 223
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEK 277
TNVYVKNLSES +DE+L ++F FGV TS +M+D G SK FGFVNFE+ D AA AV+
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 278 LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
LNG T DDK + G+AQ+K+ERE EL+ KFEQ +K QG+NLYVKNLD+++ D+K
Sbjct: 284 LNGKTF-DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 338 LKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVA 397
L++ F+ FGTITS KVM D G S+GSGFVAFSTPEEA +A+TEMNGK++ KPLYVA+A
Sbjct: 343 LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 398 QRKEDRKARLQAHFAQIQVPGGMAP-LPAGIPGYHAGTPRLAPQQLYYGQGSPGFMPPQP 456
QRKEDRKARLQA F+Q++ P M P + + Y G P + QQL+YGQG P M PQP
Sbjct: 403 QRKEDRKARLQAQFSQMR-PVNMPPAVGPRMQMYPPGGPPMG-QQLFYGQGPPA-MIPQP 459
Query: 457 AGYGFQQQMLPGMRPGVA--PNFIMP 480
G+G+QQQ++PGMRPG + PNF MP
Sbjct: 460 -GFGYQQQLVPGMRPGGSPMPNFFMP 484
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
Query: 577 PENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSEALRV 636
PE QR MLGE+LYPLVE L P + AKVTGMLLEMDQ+EV+HL+ESPE LK KV+EA+ V
Sbjct: 586 PEQQRTMLGENLYPLVEQLEP-ESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDV 644
Query: 637 LRDAA-APGSEVSDQLGSFSLNE 658
LR A +DQL S SL +
Sbjct: 645 LRSVAQQQAGGAADQLASLSLGD 667
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 548 bits (1412), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/446 (61%), Positives = 342/446 (76%), Gaps = 8/446 (1%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
SLYVGDL+ V ++QL++ F+Q Q+VS+RVCRD T R SLGY YVN+A QDA+ AL
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 98 ELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCK 157
LNF +NG+ IR+M+S RDPS+RKSG N+FIKNLD SID+KALH+TF+AFGP+LSCK
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 158 VAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKF 217
VAVD SGQSKGYGFVQ+D DEAAQ AI+KLNGML+NDK+VYVG FV +R + KF
Sbjct: 164 VAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKF 223
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEK 277
TNVYVKNLSES +DE+L ++F FGV TS +M+D G SK FGFVNFE+ D AA AV+
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 278 LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
LNG T DDK + G+AQ+K+ERE EL+ KFEQ +K QG+NLYVKNLD+++ D+K
Sbjct: 284 LNGKTF-DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 338 LKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVA 397
L++ F+ FGTITS KVM D G S+GSGFVAFSTPEEA +A+TEMNGK++ KPLYVA+A
Sbjct: 343 LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 398 QRKEDRKARLQAHFAQIQVPGGMAP-LPAGIPGYHAGTPRLAPQQLYYGQGSPGFMPPQP 456
QRKEDRKARLQA F+Q++ P M P + + Y G P + QQL+YGQG P M PQP
Sbjct: 403 QRKEDRKARLQAQFSQMR-PVNMPPAVGPRMQMYPPGGPPMG-QQLFYGQGPPA-MIPQP 459
Query: 457 AGYGFQQQMLPGMRPGVA--PNFIMP 480
G+G+QQQ++PGMRPG + PNF MP
Sbjct: 460 -GFGYQQQLVPGMRPGGSPMPNFFMP 484
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 61/83 (73%), Gaps = 2/83 (2%)
Query: 577 PENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSEALRV 636
PE QR MLGE+LYPLVE L P + AKVTGMLLEMDQ+EV+HL+ESPE LK KV+EA+ V
Sbjct: 586 PEQQRTMLGENLYPLVEQLEP-ESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMDV 644
Query: 637 LRDAA-APGSEVSDQLGSFSLNE 658
LR A +DQL S SL +
Sbjct: 645 LRSVAQQQAGGAADQLASLSLGD 667
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 212/420 (50%), Positives = 265/420 (63%), Gaps = 51/420 (12%)
Query: 97 LELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSC 156
+E+LN+ + GKP+RIMFS+RDPS R SG NVF+KNLD SIDNK L D F+AFG VLSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 157 KVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPK 216
KVA DASG SKGYGFVQF +D + A N NG LI ++ ++V FV RG+ + S
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFV---SRGQWDKSRV 117
Query: 217 FTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVE 276
FTNVYVKNL E+ TD DLK+LF FG ITSA VMKD G S+ FGFVNFE ++A A+E
Sbjct: 118 FTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKL-QGANLYVKNLDDNIND 335
K+NG + D+K L+ GRAQRK R +L+AKFE E+I R K +G NLYVKNLDD++++
Sbjct: 178 KMNGVVV-DEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 336 EKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
KL++LFSEFGTITS KVM+ S G SKG GFV FST EEA++AM +MNGK+VG KP+YV+
Sbjct: 237 TKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVS 296
Query: 396 VAQRKEDRKARLQAH-------------FAQIQVPGGMAPLPAGIPGYHAGTPRLAPQQL 442
+AQ KE K LQ F+Q+ P M + GY+ Q
Sbjct: 297 LAQCKEQHKLHLQTQFNNPPPSPHQQPIFSQVVAPATMLSQQTPLRGYNF--------QP 348
Query: 443 YYGQGS-----------PGFMPPQPAGYGFQQQMLP-----GM-----RPGVAPNFIMPY 481
Y GS P FM PQP F+ + P G+ +P + PN PY
Sbjct: 349 YSMCGSRMPNSCPPISIPNFMVPQP----FRPTLYPPAPLVGLYGSLPQPLLQPNLWNPY 404
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 150/283 (53%), Gaps = 16/283 (5%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+++V +L+ +++ QL D+FS +++S +V RD + S GY +V F + A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSK-GYGFVQFYSDLSVYTACNF 90
Query: 100 LNFTPVNGKPIRIM-FSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKV 158
N T + + I + F R + + NV++KNL + + L F FG + S V
Sbjct: 91 HNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 159 AVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERG--------- 209
D G+S+ +GFV F+ EAA AI K+NG+++++K+++VG R R
Sbjct: 151 MKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFEL 210
Query: 210 ----RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNF 265
R + K N+YVKNL +S + L++LF+ FG ITS VM NG SK GFV F
Sbjct: 211 EKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEF 270
Query: 266 ESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKF 308
+ + A+ A+ K+NG + +K +Y AQ K + + L+ +F
Sbjct: 271 STSEEASKAMLKMNGKMVG-NKPIYVSLAQCKEQHKLHLQTQF 312
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 343 bits (881), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 183/416 (43%), Positives = 260/416 (62%), Gaps = 13/416 (3%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
ASLYVGDL +V E LYD F++ + S+R+C+D + SL Y Y NF + QDA A+
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 98 ELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCK 157
E N + +NGK IR+M+S R P R++G NVF+KNL S+ N L D F FG ++SCK
Sbjct: 83 EKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCK 142
Query: 158 VAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKF 217
VA G+S+GYGFVQF+ ++AA AI LN ++ DK++YVG F++ +R + K+
Sbjct: 143 VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKP--EEKY 200
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEK 277
TN+Y+KNL +++ L++ FA FG I S + KD N + + FVNF++P+ A A E
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAET 260
Query: 278 LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
+NGT K LY GRAQ+KAERE LR +F+++ + + +N+YVKN++ + +E+
Sbjct: 261 VNGTKFG-SKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEE 319
Query: 338 LKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVA 397
L+ FS+ GTITS K+M D G SKG GFV FSTPEEA A+ +G++ KPLYVA+A
Sbjct: 320 LRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Query: 398 QRKEDRKARLQAHFAQIQVPGGMAPLPAGI-PGYHAGTPRLAPQQLYYGQGSPGFM 452
Q+KEDRK +LQ F +V + A + PG +A LYY PG +
Sbjct: 380 QKKEDRKMQLQVQFGN-RVEARKSSSSASVNPGTYA--------PLYYTNTHPGMV 426
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 5/75 (6%)
Query: 583 MLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSEALRVLRDA-- 640
+LGE L+PLVE L P Q K+TGMLLEMD+SE++ L++SPEDL ++V EA VL+ +
Sbjct: 528 LLGELLHPLVEKLEP-QLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSSKT 586
Query: 641 --AAPGSEVSDQLGS 653
AP + SD L S
Sbjct: 587 NLTAPNTHRSDYLAS 601
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 324 bits (831), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 178/394 (45%), Positives = 253/394 (64%), Gaps = 13/394 (3%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
SLYVGDL +V E L D FS +VS+ +CR+ S+ YAY+NF + A+NA+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 100 LNFTPVNGKPIRIMFSQRDPSIRK---SGYANVFIKNLDTSIDNKALHDTFAAFGPVLSC 156
LN + + GK +RIM+SQRD + R+ +G+AN+++KNLD+SI + L F FG +LSC
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 157 KVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPK 216
KV V+ +GQSKG+GFVQFD +++A +A + L+G ++ KK++V F+ ER G+
Sbjct: 142 KV-VEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQD 200
Query: 217 FTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVE 276
TNVYVKNL E+ TD+ L LF+ +G ++S VM+D G S+ FGFVNF +P++A A+E
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
L G + K L+ G+A +K ER L+ KF I++ ++ +NLYVKNL +++N+
Sbjct: 261 SLCGLQLGSKK-LFVGKALKKDERREMLKQKFSDNFIAK-PNMRWSNLYVKNLSESMNET 318
Query: 337 KLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAV 396
+L+++F +G I S KVM G SKG GFV FS EE+ QA +NG LV KP+ V V
Sbjct: 319 RLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRV 378
Query: 397 AQRKEDRKARLQAHF-AQ----IQVPGGMAPLPA 425
A+RKEDR RLQ +F AQ Q P AP PA
Sbjct: 379 AERKEDRIKRLQQYFQAQPRQYTQAPS--APSPA 410
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 159/295 (53%), Gaps = 26/295 (8%)
Query: 124 SGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQN 182
S + ++++ +L + K L D F+ PV+S + ++ +G+S Y ++ FD+ +A N
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 183 AINKLNGMLINDKKVYVGLFVR---HQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFA 239
A+ +LN + K + + R ++ R R F N+YVKNL S T L+++F
Sbjct: 78 AMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTG----FANLYVKNLDSSITSSCLERMFC 133
Query: 240 PFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAE 299
PFG I S V+++ NG SK FGFV F++ SA +A L+G+ + K+ A
Sbjct: 134 PFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVA-------- 184
Query: 300 REAELRAKF--EQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDS 357
KF + ER + N+YVKNL + + D+ L LFS++GT++S VM D
Sbjct: 185 -------KFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG 237
Query: 358 YGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAHFA 412
G S+G GFV F PE A +AM + G +G K L+V A +K++R+ L+ F+
Sbjct: 238 MGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFS 292
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 109/201 (54%), Gaps = 16/201 (7%)
Query: 206 QERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVN 264
Q G S +F ++YV +LS T++DL F+ + S + ++ V G S C+ ++N
Sbjct: 9 QALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYIN 68
Query: 265 FESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANL 324
F+SP SA+ A+ +LN + + G+A R + +L + R + ANL
Sbjct: 69 FDSPFSASNAMTRLNHSDLK-------GKAMRIMWSQRDLAYR-------RRTRTGFANL 114
Query: 325 YVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNG 384
YVKNLD +I L+ +F FG+I S KV+ ++ G SKG GFV F T + A A + ++G
Sbjct: 115 YVKNLDSSITSSCLERMFCPFGSILSCKVVEEN-GQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 385 KLVGRKPLYVAVAQRKEDRKA 405
+V K L+VA K++R A
Sbjct: 174 SMVYGKKLFVAKFINKDERAA 194
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 22/189 (11%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
+ ++YV +L V + L+ LFSQ + S+ V RD RS G+ +VNF N ++A A+
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSR-GFGFVNFCNPENAKKAM 259
Query: 98 ELLNFTPVNGKPI-----------RIMFSQR-------DPSIRKSGYANVFIKNLDTSID 139
E L + K + R M Q+ P++R ++N+++KNL S++
Sbjct: 260 ESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMR---WSNLYVKNLSESMN 316
Query: 140 NKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
L + F +G ++S KV +G+SKG+GFV F N E ++ A LNG L++ K + V
Sbjct: 317 ETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVV 376
Query: 200 GLFVRHQER 208
+ R ++R
Sbjct: 377 RVAERKEDR 385
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 145/281 (51%), Gaps = 30/281 (10%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFS--QLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAAN 95
N +++VGDL+ ++EA L F+ + +IVS++V R++ SS GY +V F + A
Sbjct: 102 NKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADK 161
Query: 96 ALELLNFTPV--NGKPIRI---MFSQRDPSIRKSG-YANVFIKNLDTSIDNKALHDTFAA 149
L+ N P+ +P R+ FS + + +G ++F+ +L + + LH+TF+
Sbjct: 162 VLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSE 221
Query: 150 FGP-VLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQE 207
P V + KV +DA +G+SKGYGFV+F ++ A+ ++NG+ + + + +G +
Sbjct: 222 KYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT 281
Query: 208 RG--------------RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV 253
G R+ G T ++V L S TDEDLKQ F+ FG I S +
Sbjct: 282 NGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV-- 339
Query: 254 NGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKV-LYAGR 293
K GFV F + +A A+EKLNGT I V L GR
Sbjct: 340 ---GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGR 377
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 17/288 (5%)
Query: 129 VFIKNLDTSIDNKALHDTF--AAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAIN 185
+++ +L +D L+ F A ++S KV + +G S+GYGFV+F++ + A +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 186 KLNG--MLINDK--KVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFA-P 240
+ NG M D+ ++ F ++R NG P + ++V +L+ +D L + F+
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNG-PDLS-IFVGDLAPDVSDALLHETFSEK 222
Query: 241 FGVITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAE 299
+ + +A V+ D N G SK +GFV F + A+ ++NG + + RK
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 282
Query: 300 REAELRAKFEQERISRYE-KLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSY 358
+ +R E ++V LD ++ DE LK FSEFG I S K+ +
Sbjct: 283 GYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV--- 339
Query: 359 GNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKAR 406
KG GFV F A +A+ ++NG ++G++ + ++ + +++ R
Sbjct: 340 --GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 385
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 25/205 (12%)
Query: 204 RHQERGRA-----NGSPKFTNVYVKNLSESCTDEDLKQLF--APFGVITSATVMKDV-NG 255
HQ RG NG K ++V +L + L F A I S V+++ NG
Sbjct: 86 HHQSRGNKHQNAFNGENK--TIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNG 143
Query: 256 NSKCFGFVNFESPDSAAAAVEKLNGTTI-NDDKVLYAGRAQRKAEREAELRAKFEQERIS 314
+S+ +GFV FES D A +++ NG + N D+ R + E R + +S
Sbjct: 144 SSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPF---RLNWASFSTGEKRLENNGPDLS 200
Query: 315 RYEKLQGANLYVKNLDDNINDEKLKDLFSE-FGTITSFKVMLDS-YGNSKGSGFVAFSTP 372
++V +L +++D L + FSE + ++ + KV+LD+ G SKG GFV F
Sbjct: 201 ---------IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 251
Query: 373 EEANQAMTEMNGKLVGRKPLYVAVA 397
E +AMTEMNG + + + A
Sbjct: 252 NERTKAMTEMNGVKCSSRAMRIGPA 276
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 110/180 (61%), Gaps = 3/180 (1%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
+A++YVG L+ ++E L++LF Q +V++ V +D+ Y ++ + + +DA A+
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 98 ELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLS-C 156
++LN ++GKPIR+ + +D G AN+FI NLD +D K L+DTF+AFG + S
Sbjct: 84 KVLNMIKLHGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIASNP 142
Query: 157 KVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSP 215
K+ D +G S+G+GF+ +D+ EA+ AI + G ++++++ V + +G +G+P
Sbjct: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTP 202
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEK 277
VYV L ++E L +LF G + + V KD V + +GF+ + S + A A++
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 278 LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
LN ++ + R + ++ + L GANL++ NLD +++++
Sbjct: 86 LNMIKLHGKPI----RVNKASQDKKSLDV--------------GANLFIGNLDPDVDEKL 127
Query: 338 LKDLFSEFGTITSF-KVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
L D FS FG I S K+M D GNS+G GF+++ + E ++ A+ M G+ + + + V+
Sbjct: 128 LYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVS 187
Query: 396 VAQRKEDRKAR 406
A +K+ + R
Sbjct: 188 YAYKKDTKGER 198
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 139/281 (49%), Gaps = 30/281 (10%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQ--LAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAAN 95
N +++VGDL ++EA L F+ +IVS++V R++ S GY +V F + A
Sbjct: 100 NKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADK 159
Query: 96 ALELLNFT--PVNGKPIRI---MFSQRDPSIRKSGY-ANVFIKNLDTSIDNKALHDTFAA 149
L N T P +P R+ FS + + +G ++F+ +L + + LH+TF+
Sbjct: 160 VLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Query: 150 FGP-VLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQE 207
P V + KV +DA +G+SKGYGFV+F ++ A+ ++NG+ + + + +G +
Sbjct: 220 KYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKT 279
Query: 208 RG--------------RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV 253
G R G T ++V L S TDEDLKQ F FG I S +
Sbjct: 280 NGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV-- 337
Query: 254 NGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKV-LYAGR 293
K GFV F + +A A+EKLNGT I V L GR
Sbjct: 338 ---GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGR 375
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 143/288 (49%), Gaps = 17/288 (5%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGP--VLSCKVAVDAS-GQSKGYGFVQFDNDEAAQNAIN 185
+++ +L +D L+ +FA+ ++S KV + + G S+GYGFV+F++ + A +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 186 KLNGMLINDK----KVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFA-P 240
+ NG + + ++ F ++R NG P + ++V +LS +D L + F+
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNG-PDLS-IFVGDLSPDVSDNLLHETFSEK 220
Query: 241 FGVITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAE 299
+ + +A V+ D N G SK +GFV F + A+ ++NG + + RK
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTN 280
Query: 300 REAELRAKFEQERISRYE-KLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSY 358
+ ++R E + ++V LD ++ DE LK F+EFG I S K+ +
Sbjct: 281 GYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV--- 337
Query: 359 GNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKAR 406
KG GFV F A +A+ ++NG ++G++ + ++ + +++ R
Sbjct: 338 --GKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 383
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 29/235 (12%)
Query: 203 VRHQERGRA-----NGSPKFTNVYVKNLSESCTDEDLKQLFAPFG---VITSATVMKDVN 254
+ HQ RG NG K ++V +L + L FA +++ + N
Sbjct: 83 LHHQSRGNKHQNAFNGENK--TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNN 140
Query: 255 GNSKCFGFVNFESPDSAAAAVEKLNGTTI-NDDKVLYAGRAQRKAEREAELRAKFEQERI 313
G S+ +GFV FES D A + + NGTT+ N D+ R + E R + +
Sbjct: 141 GLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPF---RLNWASFSTGEKRLENNGPDL 197
Query: 314 SRYEKLQGANLYVKNLDDNINDEKLKDLFSE-FGTITSFKVMLDS-YGNSKGSGFVAFST 371
S ++V +L +++D L + FSE + ++ + KV+LD+ G SKG GFV F
Sbjct: 198 S---------IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 248
Query: 372 PEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAG 426
E +AMTEMNG + + + A ++ + Q + +P G P G
Sbjct: 249 ENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGY----MPNGTLTRPEG 299
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 139/284 (48%), Gaps = 48/284 (16%)
Query: 32 GGGPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQ 91
G P S+Y G++ V E L ++F+ I S ++ R + Y +V++ + +
Sbjct: 56 GFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIR----KDKSSYGFVHYFDRR 111
Query: 92 DAANALELLNFTPVNGKPIRIMFS----QRDPSIRKSGYANVFIKNLDTSIDNKALHDTF 147
A+ A+ LN + G+P+++ ++ QR+ + S + N+F+ +L + + AL D+F
Sbjct: 112 CASMAIMTLNGRHIFGQPMKVNWAYATGQREDT---SSHFNIFVGDLSPEVTDAALFDSF 168
Query: 148 AAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFV--- 203
+AF +V D +G+S+G+GFV F N + AQ AIN++NG ++ +++
Sbjct: 169 SAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGA 228
Query: 204 -----RHQERGRA-----NGS----------------PKFTNVYVKNLSESCTDEDLKQL 237
+H G++ NGS P+FT VYV NLS T DL +L
Sbjct: 229 TFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRL 288
Query: 238 FAPF--GVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLN 279
F GVI V +D K FGFV + + D AA A++ N
Sbjct: 289 FYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAIQMGN 327
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 126/287 (43%), Gaps = 34/287 (11%)
Query: 118 DPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDND 177
DP+ +S YA N+ T + L + FA+ GP+ SCK+ YGFV + +
Sbjct: 58 DPTTCRSVYAG----NIHTQVTEILLQEIFASTGPIESCKLI---RKDKSSYGFVHYFDR 110
Query: 178 EAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQL 237
A AI LNG I + + V + R + S F N++V +LS TD L
Sbjct: 111 RCASMAIMTLNGRHIFGQPMKVNW--AYATGQREDTSSHF-NIFVGDLSPEVTDAALFDS 167
Query: 238 FAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVL--YAGRA 294
F+ F + A VM D G S+ FGFV+F + A A+ ++NG ++ ++ +A +
Sbjct: 168 FSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKG 227
Query: 295 QRKAE--REAELRAKFEQERISRYEKLQGAN------------LYVKNLDDNINDEKLKD 340
E ++ ++ E S + + +N +YV NL + L
Sbjct: 228 ATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHR 287
Query: 341 LFSEFG--TITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGK 385
LF G I +V D KG GFV ++T +EA A+ N +
Sbjct: 288 LFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAIQMGNAQ 329
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 24/184 (13%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
+VY N+ T+ L+++FA G I S +++ + +GFV++ A+ A+ L
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRK---DKSSYGFVHYFDRRCASMAIMTL 120
Query: 279 NGTTINDD--KVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
NG I KV +A ++ + + N++V +L + D
Sbjct: 121 NGRHIFGQPMKVNWAYATGQREDTSSHF------------------NIFVGDLSPEVTDA 162
Query: 337 KLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
L D FS F + + +VM D G S+G GFV+F ++A A+ EMNGK V + +
Sbjct: 163 ALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCN 222
Query: 396 VAQR 399
A +
Sbjct: 223 WATK 226
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 152/324 (46%), Gaps = 40/324 (12%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+L+VGDL ++E L+ FS ++ S++V R++ S GY +V F + A AL+
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 100 LN--FTPVNGKPIRI---MFSQRDPSIRKSG-YANVFIKNLDTSIDNKALHDTFAAFGP- 152
+ P +P R+ FS + ++G ++F+ +L + + L +TFA P
Sbjct: 180 FSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPS 239
Query: 153 VLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFV--RHQERG 209
V KV +D+ +G+SKGYGFV+F ++ A+ ++NG + +++ VG+ R G
Sbjct: 240 VKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYG 299
Query: 210 RANGSPKFT-------------------NVYVKNLSESCTDEDLKQLFAPFGVITSATVM 250
+ NGS T ++V L T+EDL Q F+ FG + S +
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 251 KDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKV-LYAGRAQRKAEREAELRAKFE 309
K GFV F + SA A+ LNGT I + V L GR+ K + R+
Sbjct: 360 V-----GKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSPNK-----QWRSDSG 409
Query: 310 QERISRYEKLQGANLYVKNLDDNI 333
+ Y + QG N N D N+
Sbjct: 410 NQWNGGYSRGQGYNNGYANQDSNM 433
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 143/300 (47%), Gaps = 37/300 (12%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
+++ +L +D LH F+ V S KV + + QS+GYGFV+F + AA+ A+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 188 NGMLINDK----KVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAP-FG 242
+G+ + + ++ F ++R NG P + ++V +L+ +D L + FA +
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENG-PDLS-IFVGDLAPDVSDAVLLETFAGRYP 238
Query: 243 VITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAERE 301
+ A V+ D N G SK +GFV F + + A+ ++NG + R R
Sbjct: 239 SVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNG-------AFCSSRQMRVGIAT 291
Query: 302 AELRAKFEQERISRYEKLQG---------------ANLYVKNLDDNINDEKLKDLFSEFG 346
+ A + Q+ S+ L G + ++V LD ++ +E L FS+FG
Sbjct: 292 PKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFG 351
Query: 347 TITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKAR 406
+ S K+ + KG GFV F+ + A +A+ +NG ++G+ + ++ R +++ R
Sbjct: 352 EVVSVKIPV-----GKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWG-RSPNKQWR 405
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 14/193 (7%)
Query: 211 ANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPD 269
+G ++V +L + L F+ ++S V+++ S+ +GFV F S
Sbjct: 112 GSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRS 171
Query: 270 SAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNL 329
+A A++ +G T+ + + + R + E RA +S ++V +L
Sbjct: 172 AAEEALQSFSGVTMPNAEQPF--RLNWASFSTGEKRASENGPDLS---------IFVGDL 220
Query: 330 DDNINDEKLKDLFS-EFGTITSFKVMLDS-YGNSKGSGFVAFSTPEEANQAMTEMNGKLV 387
+++D L + F+ + ++ KV++DS G SKG GFV F E ++AMTEMNG
Sbjct: 221 APDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFC 280
Query: 388 GRKPLYVAVAQRK 400
+ + V +A K
Sbjct: 281 SSRQMRVGIATPK 293
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 140/288 (48%), Gaps = 52/288 (18%)
Query: 32 GGGPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQ 91
G P S+Y G++ V E L ++F+ I S ++ R + Y +V++ + +
Sbjct: 56 GFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIR----KDKSSYGFVHYFDRR 111
Query: 92 DAANALELLNFTPVNGKPIRIMFS----QRDPSIRKSGYANVFIKNLDTSIDNKALHDTF 147
A+ A+ LN + G+P+++ ++ QR+ + S + N+F+ +L + + AL D+F
Sbjct: 112 CASMAIMTLNGRHIFGQPMKVNWAYATGQREDT---SSHFNIFVGDLSPEVTDAALFDSF 168
Query: 148 AAFGPVLS----CKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLF 202
+AF S +V D +G+S+G+GFV F N + AQ AIN++NG ++ +++
Sbjct: 169 SAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
Query: 203 V--------RHQERGRA-----NGS----------------PKFTNVYVKNLSESCTDED 233
+H G++ NGS P+FT VYV NLS T D
Sbjct: 229 TKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLD 288
Query: 234 LKQLFAPF--GVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLN 279
L +LF GVI V +D K FGFV + + D AA A++ N
Sbjct: 289 LHRLFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAIQMGN 331
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 127/291 (43%), Gaps = 38/291 (13%)
Query: 118 DPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDND 177
DP+ +S YA N+ T + L + FA+ GP+ SCK+ YGFV + +
Sbjct: 58 DPTTCRSVYAG----NIHTQVTEILLQEIFASTGPIESCKLI---RKDKSSYGFVHYFDR 110
Query: 178 EAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQL 237
A AI LNG I + + V + R + S F N++V +LS TD L
Sbjct: 111 RCASMAIMTLNGRHIFGQPMKVNW--AYATGQREDTSSHF-NIFVGDLSPEVTDAALFDS 167
Query: 238 FAPFGVITS----ATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVL--Y 290
F+ F +S A VM D G S+ FGFV+F + A A+ ++NG ++ ++ +
Sbjct: 168 FSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNW 227
Query: 291 AGRAQRKAE--REAELRAKFEQERISRYEKLQGAN------------LYVKNLDDNINDE 336
A + E ++ ++ E S + + +N +YV NL +
Sbjct: 228 ATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQL 287
Query: 337 KLKDLFSEFG--TITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGK 385
L LF G I +V D KG GFV ++T +EA A+ N +
Sbjct: 288 DLHRLFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAIQMGNAQ 333
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 28/188 (14%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
+VY N+ T+ L+++FA G I S +++ + +GFV++ A+ A+ L
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRK---DKSSYGFVHYFDRRCASMAIMTL 120
Query: 279 NGTTINDD--KVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
NG I KV +A ++ + + N++V +L + D
Sbjct: 121 NGRHIFGQPMKVNWAYATGQREDTSSHF------------------NIFVGDLSPEVTDA 162
Query: 337 KLKDLFSEFGTITSF----KVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKP 391
L D FS F + +S+ +VM D G S+G GFV+F ++A A+ EMNGK V +
Sbjct: 163 ALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQ 222
Query: 392 LYVAVAQR 399
+ A +
Sbjct: 223 IRCNWATK 230
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/298 (29%), Positives = 146/298 (48%), Gaps = 44/298 (14%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+L+VGDL ++E L+ FS ++ S++V R++ S GY +V F + A L+
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQ- 167
Query: 100 LNFT----PVNGKPIRIMFSQ----RDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFG 151
N++ P + +P RI ++ ++ +VF+ +L + + LH+TF+
Sbjct: 168 -NYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRY 226
Query: 152 P-VLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFV------ 203
P V S KV +D+ +G+SKGYGFV+F ++ A+ ++NG +++++ VG+
Sbjct: 227 PSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIA 286
Query: 204 -RHQERGRA---------NGSPKF--------TN--VYVKNLSESCTDEDLKQLFAPFGV 243
+ Q +A NGS + TN ++V + DEDL+Q F+ FG
Sbjct: 287 NQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGE 346
Query: 244 ITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKV-LYAGRAQRKAER 300
+ S + K GFV F SA A+E LNGT I + V L GR+ K R
Sbjct: 347 VVSVKIPV-----GKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSPNKQWR 399
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
++V +L + L F+ G ++S V+++ + S+ +GFV F S +A ++
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 279 NGTTI-NDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
+G+ + N D+ R + E RA E +++V +L ++ D
Sbjct: 170 SGSVMPNSDQPF---RINWASFSTGEKRA---------VENGPDLSVFVGDLSPDVTDVL 217
Query: 338 LKDLFSE-FGTITSFKVMLDS-YGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
L + FS+ + ++ S KV++DS G SKG GFV F E ++A+TEMNG + + V
Sbjct: 218 LHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVG 277
Query: 396 VAQRKEDRKARLQAHFAQIQVPGG 419
+A K A Q H +Q + G
Sbjct: 278 IATPKR-AIANQQQHSSQAVILAG 300
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 135/287 (47%), Gaps = 27/287 (9%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
SL++GDL+ ++E + +F+Q + S +V R++ S GY ++ F + A L+
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 100 LNFTPV--NGKPIRIMFSQRDPSIRK----SGYANVFIKNLDTSIDNKALHDTFA-AFGP 152
N P+ + R+ ++Q ++ +F+ +L + + L DTF +G
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGS 180
Query: 153 VLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVG----------- 200
V KV +D +G+SKGYGFV+F ++ A+ ++NG + + + +G
Sbjct: 181 VKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQ 240
Query: 201 --LFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSK 258
++ Q + P T ++V L + TD++LK +F FG + + +
Sbjct: 241 PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPP----GKR 296
Query: 259 CFGFVNFESPDSAAAAVEKLNGTTINDDKV-LYAGRAQRKAEREAEL 304
C GFV + + SA A+ LNGT + + L GR+ K +A+
Sbjct: 297 C-GFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQW 342
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 143/331 (43%), Gaps = 41/331 (12%)
Query: 128 NVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINK 186
+++I +L +D + FA G S KV + +GQS+GYGF++F + A+ +
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 187 LNGMLINDKKVYVGLFVRH----QERGRANGSPKFTNVYVKNLSESCTDEDLKQLFA-PF 241
NG + + L ++R + G P T ++V +L+ TD L F +
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAGEKRFQTEG-PDHT-IFVGDLAPEVTDYMLSDTFKNVY 178
Query: 242 GVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAER 300
G + A V+ D G SK +GFV F + A+ ++NG + + A + A
Sbjct: 179 GSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALP 238
Query: 301 EAELRAKFEQERISRYEKLQGAN----------LYVKNLDDNINDEKLKDLFSEFGTITS 350
+ + Y+ QGAN ++V LD N+ D++LK +F +FG +
Sbjct: 239 M----------QPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLH 288
Query: 351 FKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAH 410
K+ K GFV ++ A A++ +NG +G + + ++ R Q+
Sbjct: 289 VKIPP-----GKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWG-----RSPNKQSD 338
Query: 411 FAQIQVPG--GMAPLPAGIPGYHAGTPRLAP 439
AQ G G P P G GY A P P
Sbjct: 339 QAQWNGGGYYGYPPQPQGGYGYAAQPPTQDP 369
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 130/277 (46%), Gaps = 28/277 (10%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+L++GDL+ ++E LY F+ ++VS +V R++ GY ++ FA+ A L+
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 100 LNFTPVNGKPIRIM------FSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTF-AAFGP 152
N P+ P ++ S D Y +F+ +L + + L +TF A++
Sbjct: 123 FNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDY-TIFVGDLAADVTDYILLETFRASYPS 181
Query: 153 VLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFV-------- 203
V KV +D +G++KGYGFV+F ++ A+ ++NG+ + + + +G
Sbjct: 182 VKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQ 241
Query: 204 RHQERGRANG-----SPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSK 258
R + A G P T V+V L S TD+ LK +F+ +G I V + +
Sbjct: 242 RDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEI----VHVKIPAGKR 297
Query: 259 CFGFVNFESPDSAAAAVEKLNGTTINDDKV-LYAGRA 294
C GFV F A A+ LNG + V L GR+
Sbjct: 298 C-GFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRS 333
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 133/289 (46%), Gaps = 11/289 (3%)
Query: 128 NVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINK 186
++I +L +D L+ FA G ++S KV + +GQ +GYGF++F + AA+ +
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 187 LNGMLIND--KKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLF-APFGV 243
N I +++ + + + SP +T ++V +L+ TD L + F A +
Sbjct: 123 FNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYT-IFVGDLAADVTDYILLETFRASYPS 181
Query: 244 ITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREA 302
+ A V+ D V G +K +GFV F A+ ++NG + + A +K
Sbjct: 182 VKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQ 241
Query: 303 ELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSK 362
+ ++ ++V LD ++ D+ LK++FS++G I K+ K
Sbjct: 242 RDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPA-----GK 296
Query: 363 GSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAHF 411
GFV FS A +A+ +NG +G + ++ + ++++ + F
Sbjct: 297 RCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQSGDPSQF 345
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 132/284 (46%), Gaps = 48/284 (16%)
Query: 32 GGGPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQ 91
G P S+YVG++ V E L ++F+ + S ++ R + Y +V++ + +
Sbjct: 52 GFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIR----KDKSSYGFVHYFDRR 107
Query: 92 DAANALELLNFTPVNGKPIRIMFS----QRDPSIRKSGYANVFIKNLDTSIDNKALHDTF 147
AA A+ LN + G+PI++ ++ QR+ + S + N+F+ +L + + L+ +F
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQREDT---SSHFNIFVGDLSPEVTDATLYQSF 164
Query: 148 AAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLI-------------- 192
+ F +V D +G+S+G+GFV F N + AQ AIN++NG +
Sbjct: 165 SVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGA 224
Query: 193 --------NDKKVYVGLFVRHQERGRAN-------GSPKFTNVYVKNLSESCTDEDLKQL 237
+D K V L E G+ + +FT VYV NL+ T DL +
Sbjct: 225 TSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRY 284
Query: 238 FAPF--GVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLN 279
F GVI V +D K FGFV + + AA A++ N
Sbjct: 285 FHALGAGVIEEVRVQRD-----KGFGFVRYNTHPEAALAIQMGN 323
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 24/184 (13%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
+VYV N+ T+ L+++F G + S+ +++ + +GFV++ SAA A+ L
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRK---DKSSYGFVHYFDRRSAALAILSL 116
Query: 279 NGTTI--NDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
NG + KV +A ++ + + N++V +L + D
Sbjct: 117 NGRHLFGQPIKVNWAYATGQREDTSSHF------------------NIFVGDLSPEVTDA 158
Query: 337 KLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
L FS F + + +VM D G S+G GFV+F ++A A+ EMNGK + + +
Sbjct: 159 TLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCN 218
Query: 396 VAQR 399
A +
Sbjct: 219 WATK 222
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 25/275 (9%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
SL++GDL+ ++E L ++F + + +V R++ S GY ++ F N A L+
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 100 LNFTPV--NGKPIRIMFSQRDPSIRKSGYA---NVFIKNLDTSIDNKALHDTF-AAFGPV 153
N P+ + + R+ ++Q R+ VF+ +L + + L +TF A + V
Sbjct: 141 YNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSV 200
Query: 154 LSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVG------------ 200
KV D +G+SKGYGFV+F ++ A+ ++NG + + + G
Sbjct: 201 KGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQP 260
Query: 201 LFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCF 260
++ + P T ++V + +S T++DLK +F FG + V + +C
Sbjct: 261 ASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGEL----VHVKIPAGKRC- 315
Query: 261 GFVNFESPDSAAAAVEKLNGTTINDDKV-LYAGRA 294
GFV + + A A+ LNGT + + L GR+
Sbjct: 316 GFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRS 350
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 130/285 (45%), Gaps = 14/285 (4%)
Query: 128 NVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINK 186
+++I +L +D L + F G + KV + +G S+GYGF++F N A+ +
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 187 LNGMLINDKKVYVGLFVRH---QERGRANGSPKFTNVYVKNLSESCTDEDLKQLF-APFG 242
NG + + L ER +A G P+ T V+V +L+ TD L + F A +
Sbjct: 141 YNGAPMPSSEQAFRLNWAQLGAGERRQAEG-PEHT-VFVGDLAPDVTDHMLTETFKAVYS 198
Query: 243 VITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAERE 301
+ A V+ D G SK +GFV F A+ ++NG + + + G A K
Sbjct: 199 SVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSS-RPMRTGPAANKKPLT 257
Query: 302 AELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNS 361
+ + + S ++V +D ++ ++ LK +F +FG + K+
Sbjct: 258 MQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPA-----G 312
Query: 362 KGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKAR 406
K GFV ++ A QA++ +NG +G + + ++ + +++ +
Sbjct: 313 KRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQ 357
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 127/279 (45%), Gaps = 35/279 (12%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+L++GDL+ V+E L FSQ ++VS++V R++ GY ++ F + A L+
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 100 LNFTPVNGKPIRIMFSQRD----PSIRKSGYANVFIKNLDTSIDNKALHDTF-AAFGPVL 154
N T + G + + + ++F+ +L + + L +TF + V
Sbjct: 85 YNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVR 144
Query: 155 SCKVAVDAS-GQSKGYGFVQFDNDEAAQNAINKLNGMLINDK---------KVYVGL--- 201
KV D S G+SKGYGFV+F + A+ ++NG+ + + K VG+
Sbjct: 145 GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQ 204
Query: 202 FVRHQERGRANGSP------------KFTNVYVKNLSESCTDEDLKQLFAPFGVITSATV 249
+V A +P T + V NL ++ T+E+LK+ F+ G + +
Sbjct: 205 YVTKVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKI 264
Query: 250 MKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKV 288
+K +G+V F++ SA AV+++ G I V
Sbjct: 265 PA-----TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAV 298
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 23/209 (11%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEK 277
+++ +L + L F+ G + S V+++ + G + +GF+ F S +A ++
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 278 LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGA---NLYVKNLDDNIN 334
NGT + EL + +K+ +++V +L ++
Sbjct: 85 YNGTQMPG----------------TELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVT 128
Query: 335 DEKLKDLFS-EFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPL 392
D L++ F + ++ KV+ D S G SKG GFV F+ E N+AM EMNG +P+
Sbjct: 129 DYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPM 188
Query: 393 YVAVAQRKEDRKARLQAHFAQIQVPGGMA 421
++ A K++ + Q + ++ VP +A
Sbjct: 189 RISAATPKKNVGVQ-QQYVTKVTVPSAVA 216
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 118/247 (47%), Gaps = 27/247 (10%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+L++GDL+ ++E LY F+ ++VS +V R++ GY ++ FA+ A L+
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 100 LNFTPVNGKPIRIM------FSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTF-AAFGP 152
N P+ P ++ S D Y +F+ +L + + L +TF A++
Sbjct: 123 FNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDY-TIFVGDLAADVTDYILLETFRASYPS 181
Query: 153 VLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFV-------- 203
V KV +D +G++KGYGFV+F ++ A+ ++NG+ + + + +G
Sbjct: 182 VKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQ 241
Query: 204 RHQERGRANG-----SPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSK 258
R + A G P T V+V L S TD+ LK +F+ +G I V + +
Sbjct: 242 RDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEI----VHVKIPAGKR 297
Query: 259 CFGFVNF 265
C GFV F
Sbjct: 298 C-GFVQF 303
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 114/248 (45%), Gaps = 11/248 (4%)
Query: 128 NVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINK 186
++I +L +D L+ FA G ++S KV + +GQ +GYGF++F + AA+ +
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 187 LNGMLIND--KKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLF-APFGV 243
N I +++ + + + SP +T ++V +L+ TD L + F A +
Sbjct: 123 FNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYT-IFVGDLAADVTDYILLETFRASYPS 181
Query: 244 ITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREA 302
+ A V+ D V G +K +GFV F A+ ++NG + + A +K
Sbjct: 182 VKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQ 241
Query: 303 ELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSK 362
+ ++ ++V LD ++ D+ LK++FS++G I K+ K
Sbjct: 242 RDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPA-----GK 296
Query: 363 GSGFVAFS 370
GFV FS
Sbjct: 297 RCGFVQFS 304
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 125/283 (44%), Gaps = 39/283 (13%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+L++GDL+ V+E L FSQ ++VS++V R++ GY ++ F + A L+
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 100 LNFTPVNGKPIRIMFSQRD----PSIRKSGYANVFIKNLDTSIDNKALHDTF-AAFGPVL 154
N T + G + + + ++F+ +L + + L +TF + V
Sbjct: 85 YNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVR 144
Query: 155 SCKVAVDAS-GQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERG---- 209
KV D S G+SKGYGFV+F + A+ ++NG+ + + + + + G
Sbjct: 145 GAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQ 204
Query: 210 ------------RANGSP------------KFTNVYVKNLSESCTDEDLKQLFAPFGVIT 245
A +P T + V NL ++ T+E+LK+ F+ G +
Sbjct: 205 YVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVI 264
Query: 246 SATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKV 288
+ +K +G+V F++ SA AV+++ G I V
Sbjct: 265 YVKIPA-----TKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAV 302
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 22/190 (11%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEK 277
+++ +L + L F+ G + S V+++ + G + +GF+ F S +A ++
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 278 LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGA---NLYVKNLDDNIN 334
NGT + EL + +K+ +++V +L ++
Sbjct: 85 YNGTQMPG----------------TELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVT 128
Query: 335 DEKLKDLFS-EFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPL 392
D L++ F + ++ KV+ D S G SKG GFV F+ E N+AM EMNG +P+
Sbjct: 129 DYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPM 188
Query: 393 YVAVAQRKED 402
++ A K++
Sbjct: 189 RISAATPKKN 198
>AT1G45100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:17050631-17052189 FORWARD LENGTH=497
Length = 497
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/384 (21%), Positives = 157/384 (40%), Gaps = 39/384 (10%)
Query: 37 ANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANA 96
+ +L+V +L + + D FS + ++V++R+C T + + +
Sbjct: 62 VSVTLFVSELSRQTKISDIIDFFSDVGEVVNVRICLSHTGSCCVLALLSFLLLVRQTRHW 121
Query: 97 -LELLNFTPVNGKPIRIM-----FSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
++N + ++++ +D + V + NL + F
Sbjct: 122 KRRMVNICTIKRFLLKLLRQVHTVQSKDETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGV 181
Query: 151 GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGR 210
V+S ++ V+ G+ GYGFV+F + A A+ + NG +++ K+ L H+ G
Sbjct: 182 AQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKNGEYLHNHKIL--LMKGHESPGF 239
Query: 211 ANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDS 270
A + ++V NL +S D+ F G + ++ + G +GFV F S +
Sbjct: 240 AEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHAGWGFVEFASANE 299
Query: 271 AAAAVEKLNGTTINDDKVLYAGRA-----------QRKAEREAELRAKFEQERISRYEKL 319
A A+ K NG +++ K+ G K E LR E I E +
Sbjct: 300 AEKALVK-NGEYLHNYKISLDGAKTAPHRPPKFCLDHKVWYEDYLRR--ESLLIKEVEGV 356
Query: 320 QGAN---------------LYVKNLDDNIN--DEKLKDLFSEFGTITSFKVMLDSYGNSK 362
+G + ++V NL N + + FS+ G I ++++D G
Sbjct: 357 EGLDETPDFLEEVAARKNTVFVANLPYNCRLIVPTIINFFSDVGEIVHIRIIVDHMGEPV 416
Query: 363 GSGFVAFSTPEEANQAMTEMNGKL 386
G GFV F++ EA +A+ + GK+
Sbjct: 417 GCGFVEFNSSNEAEKALQKKTGKI 440
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 118/285 (41%), Gaps = 41/285 (14%)
Query: 36 FANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAAN 95
F + + V +L A + F+ +AQ+VS+R+ + + +GY +V FA+A A
Sbjct: 155 FVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKH-VGYGFVEFASAYGANK 213
Query: 96 ALELLNFTPVNGKPIRIMFSQRDPSIRKSG--YANVFIKNLDTSIDNKALHDTFAAFGPV 153
ALE N ++ I +M P + +F+ NL SI + + F G V
Sbjct: 214 ALEEKNGEYLHNHKILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEV 273
Query: 154 LSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLIN-------------------- 193
+ ++ V++ G+ G+GFV+F + A+ A+ K L N
Sbjct: 274 VHVRLIVNSQGKHAGWGFVEFASANEAEKALVKNGEYLHNYKISLDGAKTAPHRPPKFCL 333
Query: 194 DKKVYVGLFVRHQ-----ERGRANG---SPKF--------TNVYVKNLSESC--TDEDLK 235
D KV+ ++R + E G +P F V+V NL +C +
Sbjct: 334 DHKVWYEDYLRRESLLIKEVEGVEGLDETPDFLEEVAARKNTVFVANLPYNCRLIVPTII 393
Query: 236 QLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNG 280
F+ G I ++ D G GFV F S + A A++K G
Sbjct: 394 NFFSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTG 438
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 45/278 (16%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P S+YVG++ V E L ++F+ + S ++ R + +SS Y +V++ + + A
Sbjct: 50 PSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKE--KSS--YGFVHYFDRRSAG 105
Query: 95 NALELLNFTPVNGKPIRIMFS----QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A+ LN + G+PI++ ++ QR+ + S + N+F+ +L + + L F+ +
Sbjct: 106 LAILSLNGRHLFGQPIKVNWAYASGQREDT---SSHFNIFVGDLSPEVTDAMLFTCFSVY 162
Query: 151 GPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERG 209
+V D +G+S+G+GFV F N + AQ AI+++ G + +++ + G
Sbjct: 163 PTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSG 222
Query: 210 R---------------------ANG-----SPKFTNVYVKNLSESCTDEDLKQLFAPF-- 241
NG + ++T VYV NL+ + DL + F
Sbjct: 223 EDKQSSDSKSVVELTSGDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGA 282
Query: 242 GVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLN 279
GVI V +D K FGFV + + AA A++ N
Sbjct: 283 GVIEEVRVQRD-----KGFGFVRYSTHVEAALAIQMGN 315
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 125/291 (42%), Gaps = 33/291 (11%)
Query: 118 DPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDND 177
DPS +S V++ N+ + L + FA GPV SCK+ + YGFV + +
Sbjct: 49 DPSTCRS----VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRK---EKSSYGFVHYFDR 101
Query: 178 EAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQL 237
+A AI LNG + + + V + R + S F N++V +LS TD L
Sbjct: 102 RSAGLAILSLNGRHLFGQPIKVNW--AYASGQREDTSSHF-NIFVGDLSPEVTDAMLFTC 158
Query: 238 FAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVL--YAGRA 294
F+ + + A VM D G S+ FGFV+F + A A++++ G + ++ +A +
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKG 218
Query: 295 QRKAEREAELRAKFEQERISRYEK-----------LQGANLYVKNLDDNINDEKLKDLFS 343
E + +K E S K Q +YV NL ++ L F
Sbjct: 219 ATSGEDKQSSDSKSVVELTSGDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFH 278
Query: 344 EF--GTITSFKVMLDSYGNSKGSGFVAFSTPEEANQA--MTEMNGKLVGRK 390
G I +V D KG GFV +ST EA A M + L GR+
Sbjct: 279 SLGAGVIEEVRVQRD-----KGFGFVRYSTHVEAALAIQMGNTHSYLSGRQ 324
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 24/184 (13%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
+VYV N+ T+ L+++FA G + S +++ +GFV++ SA A+ L
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRK---EKSSYGFVHYFDRRSAGLAILSL 111
Query: 279 NGTTINDD--KVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
NG + KV +A + ++ + + N++V +L + D
Sbjct: 112 NGRHLFGQPIKVNWAYASGQREDTSSHF------------------NIFVGDLSPEVTDA 153
Query: 337 KLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
L FS + T + +VM D G S+G GFV+F ++A A+ E+ GK +G + +
Sbjct: 154 MLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCN 213
Query: 396 VAQR 399
A +
Sbjct: 214 WATK 217
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 132/281 (46%), Gaps = 48/281 (17%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P S+YVG++ V E L ++F+ + S ++ R + +SS Y +V++ + + A
Sbjct: 50 PSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKE--KSS--YGFVHYFDRRSAG 105
Query: 95 NALELLNFTPVNGKPIRIMFS----QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A+ LN + G+PI++ ++ QR+ + S + N+F+ +L + + L F+ +
Sbjct: 106 LAILSLNGRHLFGQPIKVNWAYASGQREDT---SSHFNIFVGDLSPEVTDAMLFTCFSVY 162
Query: 151 GPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLI----------------- 192
+V D +G+S+G+GFV F N + AQ AI+++ G +
Sbjct: 163 PTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSG 222
Query: 193 -----NDKKVYVGLFVRHQERGR--ANG-----SPKFTNVYVKNLSESCTDEDLKQLFAP 240
+D K V L E G+ NG + ++T VYV NL+ + DL + F
Sbjct: 223 EDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHS 282
Query: 241 F--GVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLN 279
GVI V +D K FGFV + + AA A++ N
Sbjct: 283 LGAGVIEEVRVQRD-----KGFGFVRYSTHVEAALAIQMGN 318
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 125/294 (42%), Gaps = 36/294 (12%)
Query: 118 DPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDND 177
DPS +S V++ N+ + L + FA GPV SCK+ + YGFV + +
Sbjct: 49 DPSTCRS----VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRK---EKSSYGFVHYFDR 101
Query: 178 EAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQL 237
+A AI LNG + + + V + R + S F N++V +LS TD L
Sbjct: 102 RSAGLAILSLNGRHLFGQPIKVNW--AYASGQREDTSSHF-NIFVGDLSPEVTDAMLFTC 158
Query: 238 FAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVL--YAGRA 294
F+ + + A VM D G S+ FGFV+F + A A++++ G + ++ +A +
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKG 218
Query: 295 QRKAEREAELRAKFEQERISRYEK--------------LQGANLYVKNLDDNINDEKLKD 340
E + +K E S + Q +YV NL ++ L
Sbjct: 219 ATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHR 278
Query: 341 LFSEF--GTITSFKVMLDSYGNSKGSGFVAFSTPEEANQA--MTEMNGKLVGRK 390
F G I +V D KG GFV +ST EA A M + L GR+
Sbjct: 279 HFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHVEAALAIQMGNTHSYLSGRQ 327
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 24/184 (13%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
+VYV N+ T+ L+++FA G + S +++ +GFV++ SA A+ L
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRK---EKSSYGFVHYFDRRSAGLAILSL 111
Query: 279 NGTTINDD--KVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
NG + KV +A + ++ + + N++V +L + D
Sbjct: 112 NGRHLFGQPIKVNWAYASGQREDTSSHF------------------NIFVGDLSPEVTDA 153
Query: 337 KLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
L FS + T + +VM D G S+G GFV+F ++A A+ E+ GK +G + +
Sbjct: 154 MLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCN 213
Query: 396 VAQR 399
A +
Sbjct: 214 WATK 217
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 28/190 (14%)
Query: 37 ANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANA 96
A+ L+VG+L NV+ AQL LF + + V D+ S G+ +V ++ + A
Sbjct: 89 ADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAA 148
Query: 97 LELLNFTPVNGKPIRIMFSQRDPSIRKSGYA--------------------------NVF 130
+ N ++G+P+R+ + P R+ G++ V+
Sbjct: 149 AQQFNGYELDGRPLRVN-AGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVY 207
Query: 131 IKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNG 189
+ NL +D+ AL F+ G V+ +V D SG+SKG+GFV +D+ + QNAI L+G
Sbjct: 208 VGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267
Query: 190 MLINDKKVYV 199
++ +++ V
Sbjct: 268 ADLDGRQIRV 277
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 10/195 (5%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
++V NL + L QLF G + V+ D + G S+ FGFV S AA ++
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 279 NGTTINDDKV-LYAGRAQRKAE-------REAELRAKFEQERISRYEKLQGANLYVKNLD 330
NG ++ + + AG K E R + + G +YV NL
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212
Query: 331 DNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGR 389
++D L+ LFSE G + +V+ D G SKG GFV + + +E A+ ++G +
Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDG 272
Query: 390 KPLYVAVAQRKEDRK 404
+ + V+ A+ + R+
Sbjct: 273 RQIRVSEAEARPPRR 287
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 30/197 (15%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
+F+ NL ++D+ L F + G V +V D +G+S+G+GFV + + A +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 188 NGMLINDK--KVYVGLFVRHQERGRANG-------------------SPKFTNVYVKNLS 226
NG ++ + +V G +E G + G + VYV NLS
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLS 212
Query: 227 ESCTDEDLKQLFAPFGVITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEKLNGTTIND 285
D L+ LF+ G + A V+ D + G SK FGFV ++S A++ L+G ++
Sbjct: 213 WGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD- 271
Query: 286 DKVLYAGRAQRKAEREA 302
GR R +E EA
Sbjct: 272 ------GRQIRVSEAEA 282
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
+YVG+L V++ L LFS+ ++V RV D+ S G+ +V + ++Q+ NA++ L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 101 NFTPVNGKPIRIMFSQRDPSIRK 123
+ ++G+ IR+ ++ P R+
Sbjct: 266 DGADLDGRQIRVSEAEARPPRRQ 288
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 95/173 (54%), Gaps = 10/173 (5%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQ--LAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAAN 95
N +++VGDL ++EA L F+ +IVS++V R++ S GY +V F + A
Sbjct: 100 NKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADK 159
Query: 96 ALELLNFT--PVNGKPIRI---MFSQRDPSIRKSGY-ANVFIKNLDTSIDNKALHDTFAA 149
L N T P +P R+ FS + + +G ++F+ +L + + LH+TF+
Sbjct: 160 VLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSE 219
Query: 150 FGP-VLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVG 200
P V + KV +DA +G+SKGYGFV+F ++ A+ ++NG+ + + + +G
Sbjct: 220 KYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIG 272
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 29/235 (12%)
Query: 203 VRHQERGRA-----NGSPKFTNVYVKNLSESCTDEDLKQLFAPFG---VITSATVMKDVN 254
+ HQ RG NG K ++V +L + L FA +++ + N
Sbjct: 83 LHHQSRGNKHQNAFNGENK--TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNN 140
Query: 255 GNSKCFGFVNFESPDSAAAAVEKLNGTTI-NDDKVLYAGRAQRKAEREAELRAKFEQERI 313
G S+ +GFV FES D A + + NGTT+ N D+ R + E R + +
Sbjct: 141 GLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPF---RLNWASFSTGEKRLENNGPDL 197
Query: 314 SRYEKLQGANLYVKNLDDNINDEKLKDLFSE-FGTITSFKVMLDS-YGNSKGSGFVAFST 371
S ++V +L +++D L + FSE + ++ + KV+LD+ G SKG GFV F
Sbjct: 198 S---------IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGD 248
Query: 372 PEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAG 426
E +AMTEMNG + + + A ++ + Q + +P G P G
Sbjct: 249 ENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGY----MPNGTLTRPEG 299
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 90/374 (24%), Positives = 150/374 (40%), Gaps = 56/374 (14%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAIN 185
+ VFI L + + L D G + ++ D SG SKGY FV F + AQ AI
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 186 KLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV-I 244
+L+ K + L S +++ N+ ++ T+++ +++ G +
Sbjct: 176 ELHSKEFKGKTIRCSL------------SETKNRLFIGNIPKNWTEDEFRKVIEDVGPGV 223
Query: 245 TSATVMKDVNGNSK--CFGFVNFESPDSAAAAVEKLNGTTI----NDDKVLYAGRAQRKA 298
+ ++KD ++ F FV + + A + +K+ + N V +A
Sbjct: 224 ENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPE 283
Query: 299 EREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSY 358
A + K LYVKN+ +N + E+LK+LF G +T V
Sbjct: 284 HSAAAAQVKA---------------LYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGK 327
Query: 359 GNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAH-FAQIQVP 417
G + GFV ++ A +A+ + V +PL V +A+ + +RK ++ + P
Sbjct: 328 GGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTP 387
Query: 418 --------GGMAPLPAGIPGYHAGTPRLAPQQLYYGQGS--------PGFMPPQPAGYGF 461
GG A P G G G Q + YG+G+ P +P GY
Sbjct: 388 APFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVL 447
Query: 462 QQQMLPGMRPGVAP 475
QQ PGM AP
Sbjct: 448 QQ---PGMPMAAAP 458
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 118/271 (43%), Gaps = 17/271 (6%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +++G L +V E L DL ++ +I +R+ +D+ S GYA+V F A
Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 171
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
A+E L+ GK IR S+ +FI N+ + GP V
Sbjct: 172 KAIEELHSKEFKGKTIRCSLSETK--------NRLFIGNIPKNWTEDEFRKVIEDVGPGV 223
Query: 154 LSCKVAVDASG--QSKGYGFVQFDNDEAAQNAINKL--NGMLINDKKVYVGLFVRHQERG 209
+ ++ D + +++G+ FV + N+ A + K+ + + V
Sbjct: 224 ENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPE 283
Query: 210 RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPD 269
+ + + +YVKN+ E+ + E LK+LF G +T V G + FGFV++
Sbjct: 284 HSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTK-IVTPPGKGGKRDFGFVHYAERS 342
Query: 270 SAAAAVEKLNGTTIND---DKVLYAGRAQRK 297
SA AV+ +N + VL +A+RK
Sbjct: 343 SALKAVKDTERYEVNGQPLEVVLAKPQAERK 373
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 320 QGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQA 378
G+ +++ L ++ +E L+DL E G I ++M D G+SKG FVAF T + A +A
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Query: 379 MTEMNGKLVGRKPLYVAVAQRK 400
+ E++ K K + ++++ K
Sbjct: 174 IEELHSKEFKGKTIRCSLSETK 195
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 90/374 (24%), Positives = 150/374 (40%), Gaps = 56/374 (14%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAIN 185
+ VFI L + + L D G + ++ D SG SKGY FV F + AQ AI
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 186 KLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGV-I 244
+L+ K + L S +++ N+ ++ T+++ +++ G +
Sbjct: 176 ELHSKEFKGKTIRCSL------------SETKNRLFIGNIPKNWTEDEFRKVIEDVGPGV 223
Query: 245 TSATVMKDVNGNSK--CFGFVNFESPDSAAAAVEKLNGTTI----NDDKVLYAGRAQRKA 298
+ ++KD ++ F FV + + A + +K+ + N V +A
Sbjct: 224 ENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPE 283
Query: 299 EREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSY 358
A + K LYVKN+ +N + E+LK+LF G +T V
Sbjct: 284 HSAAAAQVKA---------------LYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGK 327
Query: 359 GNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAH-FAQIQVP 417
G + GFV ++ A +A+ + V +PL V +A+ + +RK ++ + P
Sbjct: 328 GGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTP 387
Query: 418 --------GGMAPLPAGIPGYHAGTPRLAPQQLYYGQGS--------PGFMPPQPAGYGF 461
GG A P G G G Q + YG+G+ P +P GY
Sbjct: 388 APFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVL 447
Query: 462 QQQMLPGMRPGVAP 475
QQ PGM AP
Sbjct: 448 QQ---PGMPMAAAP 458
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 118/271 (43%), Gaps = 17/271 (6%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +++G L +V E L DL ++ +I +R+ +D+ S GYA+V F A
Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 171
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-V 153
A+E L+ GK IR S+ +FI N+ + GP V
Sbjct: 172 KAIEELHSKEFKGKTIRCSLSETK--------NRLFIGNIPKNWTEDEFRKVIEDVGPGV 223
Query: 154 LSCKVAVDASG--QSKGYGFVQFDNDEAAQNAINKL--NGMLINDKKVYVGLFVRHQERG 209
+ ++ D + +++G+ FV + N+ A + K+ + + V
Sbjct: 224 ENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPE 283
Query: 210 RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPD 269
+ + + +YVKN+ E+ + E LK+LF G +T V G + FGFV++
Sbjct: 284 HSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTK-IVTPPGKGGKRDFGFVHYAERS 342
Query: 270 SAAAAVEKLNGTTIND---DKVLYAGRAQRK 297
SA AV+ +N + VL +A+RK
Sbjct: 343 SALKAVKDTERYEVNGQPLEVVLAKPQAERK 373
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 320 QGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQA 378
G+ +++ L ++ +E L+DL E G I ++M D G+SKG FVAF T + A +A
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Query: 379 MTEMNGKLVGRKPLYVAVAQRK 400
+ E++ K K + ++++ K
Sbjct: 174 IEELHSKEFKGKTIRCSLSETK 195
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 112/268 (41%), Gaps = 19/268 (7%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +++G L +V E L DL ++ +I +R+ +D+ S GYA+V F A
Sbjct: 92 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 151
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVL 154
A+E L+ GK IR S+ +FI N+ + GP
Sbjct: 152 KAIEELHSKEFKGKTIRCSLSETK--------NRLFIGNIPKNWTEDEFRKVIEDVGPGD 203
Query: 155 SCKVAVDASGQSKGYGFVQFDNDEAAQNAINKL--NGMLINDKKVYVGLFVRHQERGRAN 212
+++G+ FV + N+ A + K+ + + V +
Sbjct: 204 PTNTT-----RNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSA 258
Query: 213 GSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAA 272
+ + +YVKN+ E+ + E LK+LF G +T V G + FGFV++ SA
Sbjct: 259 AAAQVKALYVKNIPENTSTEQLKELFQRHGEVTK-IVTPPGKGGKRDFGFVHYAERSSAL 317
Query: 273 AAVEKLNGTTIND---DKVLYAGRAQRK 297
AV+ +N + VL +A+RK
Sbjct: 318 KAVKDTERYEVNGQPLEVVLAKPQAERK 345
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 145/371 (39%), Gaps = 58/371 (15%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAIN 185
+ VFI L + + L D G + ++ D SG SKGY FV F + AQ AI
Sbjct: 96 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 155
Query: 186 KLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVIT 245
+L+ K + L S +++ N+ ++ T+++ +++ G
Sbjct: 156 ELHSKEFKGKTIRCSL------------SETKNRLFIGNIPKNWTEDEFRKVIEDVGPGD 203
Query: 246 SATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTI----NDDKVLYAGRAQRKAERE 301
++ + F FV + + A + +K+ + N V +A
Sbjct: 204 PTNTTRN-----RGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSA 258
Query: 302 AELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNS 361
A + K LYVKN+ +N + E+LK+LF G +T V G
Sbjct: 259 AAAQVK---------------ALYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPGKGGK 302
Query: 362 KGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAH-FAQIQVP--- 417
+ GFV ++ A +A+ + V +PL V +A+ + +RK ++ + P
Sbjct: 303 RDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPTPAPF 362
Query: 418 -----GGMAPLPAGIPGYHAGTPRLAPQQLYYGQGS--------PGFMPPQPAGYGFQQQ 464
GG A P G G G Q + YG+G+ P +P GY QQ
Sbjct: 363 VHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYVLQQ- 421
Query: 465 MLPGMRPGVAP 475
PGM AP
Sbjct: 422 --PGMPMAAAP 430
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 320 QGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQA 378
G+ +++ L ++ +E L+DL E G I ++M D G+SKG FVAF T + A +A
Sbjct: 94 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 153
Query: 379 MTEMNGKLVGRKPLYVAVAQRK 400
+ E++ K K + ++++ K
Sbjct: 154 IEELHSKEFKGKTIRCSLSETK 175
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 151/375 (40%), Gaps = 58/375 (15%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAIN 185
+ VFI L + + L D G + ++ D SG SKGY FV F + AQ AI
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 186 KLNGMLINDKKVYVGLFVRHQERGRANGSPKFTN-VYVKNLSESCTDEDLKQLFAPFGV- 243
+L+ AN S +N +++ N+ ++ T+++ +++ G
Sbjct: 176 ELHSKEFKASST-------------ANCSLSLSNRLFIGNIPKNWTEDEFRKVIEDVGPG 222
Query: 244 ITSATVMKDVNGNSK--CFGFVNFESPDSAAAAVEKLNGTTI----NDDKVLYAGRAQRK 297
+ + ++KD ++ F FV + + A + +K+ + N V +A
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSP 282
Query: 298 AEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDS 357
A + K LYVKN+ +N + E+LK+LF G +T V
Sbjct: 283 EHSAAAAQVKA---------------LYVKNIPENTSTEQLKELFQRHGEVTKI-VTPPG 326
Query: 358 YGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAH-FAQIQV 416
G + GFV ++ A +A+ + V +PL V +A+ + +RK ++ +
Sbjct: 327 KGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSSYSYGAAPT 386
Query: 417 P--------GGMAPLPAGIPGYHAGTPRLAPQQLYYGQGS--------PGFMPPQPAGYG 460
P GG A P G G G Q + YG+G+ P +P GY
Sbjct: 387 PAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPMIYGRGAMPTGMQMVPMLLPDGRVGYV 446
Query: 461 FQQQMLPGMRPGVAP 475
QQ PGM AP
Sbjct: 447 LQQ---PGMPMAAAP 458
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 117/274 (42%), Gaps = 23/274 (8%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +++G L +V E L DL ++ +I +R+ +D+ S GYA+V F A
Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 171
Query: 95 NALELLN---FTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFG 151
A+E L+ F + + S R +FI N+ + G
Sbjct: 172 KAIEELHSKEFKASSTANCSLSLSNR-----------LFIGNIPKNWTEDEFRKVIEDVG 220
Query: 152 P-VLSCKVAVDASG--QSKGYGFVQFDNDEAAQNAINKL--NGMLINDKKVYVGLFVRHQ 206
P V + ++ D + +++G+ FV + N+ A + K+ + + V
Sbjct: 221 PGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKS 280
Query: 207 ERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFE 266
+ + + +YVKN+ E+ + E LK+LF G +T V G + FGFV++
Sbjct: 281 SPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTK-IVTPPGKGGKRDFGFVHYA 339
Query: 267 SPDSAAAAVEKLNGTTIND---DKVLYAGRAQRK 297
SA AV+ +N + VL +A+RK
Sbjct: 340 ERSSALKAVKDTERYEVNGQPLEVVLAKPQAERK 373
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 96/195 (49%), Gaps = 27/195 (13%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
LYVG+L + ++L +F + +V +++ D+ S G+ +V + ++A A+++
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 101 NFTPVNGKPIRIMFSQRDPSIRKSG---------------YAN----VFIKNLDTSIDNK 141
N + + G+ +++ F P + + G Y + V+ NL ++ ++
Sbjct: 178 NSSQIGGRTVKVNF----PEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQ 233
Query: 142 ALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVG 200
L D F VL KV + +G+S+G+GF+ F++ E Q+A+ +NG+ + + + +
Sbjct: 234 GLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLN 293
Query: 201 LFVRHQERGRANGSP 215
L ER + SP
Sbjct: 294 L---ASEREKPTVSP 305
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 6/185 (3%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
+YV NL + T +L Q+F G + ++ D V S+ FGFV S + A A++
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 279 NGTTINDDKV-LYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
N + I V + R E E +R K S + +Y NL N+ +
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEV-MRTKIRDNNRSYVDSPH--KVYAGNLGWNLTSQG 234
Query: 338 LKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAV 396
LKD F + + KV+ + + G S+G GF++F + E A+ MNG V + L + +
Sbjct: 235 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNL 294
Query: 397 AQRKE 401
A +E
Sbjct: 295 ASERE 299
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 29/192 (15%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKL 187
+++ NL +I + L F G V+ ++ D + +S+G+GFV + E A+ A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 188 NGMLINDKKVYVGL--------------FVRHQERGRANGSPKFTNVYVKNLSESCTDED 233
N I + V V +R R + K VY NL + T +
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHK---VYAGNLGWNLTSQG 234
Query: 234 LKQLFAPF-GVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAG 292
LK F GV+ + + + G S+ FGF++FES ++ +A+ +NG + G
Sbjct: 235 LKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVE-------G 287
Query: 293 RAQR---KAERE 301
RA R +ERE
Sbjct: 288 RALRLNLASERE 299
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 15/188 (7%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGN-SKCFGFVNFESPDSAAAAVEKL 278
++V NL+ + L LF G + A V+ + + S+ FGFV S D A AVEK
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISR-YEKLQGANLYVKNLDDNINDEK 337
N +N ++L +A + R ER R YE +YV NL ++++ +
Sbjct: 212 NRYDLNG-RLLTVNKAAPRGSR---------PERAPRVYEP--AFRVYVGNLPWDVDNGR 259
Query: 338 LKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAV 396
L+ LFSE G + +V+ D G S+G GFV S +E N+A++ ++G+ + + + V V
Sbjct: 260 LEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNV 319
Query: 397 AQRKEDRK 404
A+ + R+
Sbjct: 320 AEERPPRR 327
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 9/175 (5%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P A L+VG+L +VN L LF Q + V ++ S G+ +V ++ +A
Sbjct: 146 PSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205
Query: 95 NALELLNFTPVNGKPIRIMFS-------QRDPSIRKSGYANVFIKNLDTSIDNKALHDTF 147
A+E N +NG+ + + + +R P + + + V++ NL +DN L F
Sbjct: 206 TAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF-RVYVGNLPWDVDNGRLEQLF 264
Query: 148 AAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGL 201
+ G V+ +V D +G+S+G+GFV + + AI+ L+G + + + V +
Sbjct: 265 SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNV 319
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 51 NEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELLNFTPVNGKPI 110
E +Y+ FS+ ++ +R+ D+ R S G YV F + A+ L+ P+ G+P+
Sbjct: 194 TERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPV 252
Query: 111 RIMFSQRDPSIRKS----------------GYANVFIKNLDTSIDNKALHDTFAAFGPVL 154
+ S+ + ++ +S G +++ NL ++ L F +FG V
Sbjct: 253 MVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVE 312
Query: 155 SCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGML 191
+V D +G KG+GFVQF E A+NA+N LNG L
Sbjct: 313 LVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQL 348
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 8/187 (4%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEK 277
V+ ++ T+ D+ + F+ G + ++ D ++ S+ G+V F S A+
Sbjct: 183 TVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-A 241
Query: 278 LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGAN-LYVKNLDDNINDE 336
L+G + V+ K ++ A + Y GA LYV NL N++++
Sbjct: 242 LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSG--GARRLYVGNLHINMSED 299
Query: 337 KLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKL--VGRKPLYV 394
L+ +F FG++ +V D G KG GFV F+ E+A A+ +NG+L GR
Sbjct: 300 DLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQLEIAGRAIKVS 358
Query: 395 AVAQRKE 401
AV + E
Sbjct: 359 AVTDQTE 365
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 85/182 (46%), Gaps = 30/182 (16%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
VY+ N+ + T+E L +L G + VM D +G S+ FGF +S + A A VEKL
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISR---YEKLQGAN---------LYV 326
NG T+ GR E++ ++ I+ LQ + +YV
Sbjct: 138 NGNTVE-------GR---------EIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYV 181
Query: 327 KNLDDNINDEKLKDLFSEFGTITSFKV-MLDSYGNSKGSGFVAFSTPEEANQAMTEMNGK 385
NL + E L++LFSE G + S KV + S G GFV FS+ E+ A+ +N
Sbjct: 182 GNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNS 241
Query: 386 LV 387
L+
Sbjct: 242 LL 243
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
V+I N+ ++ N+ L G V +V D SG+S+ +GF + E A + KL
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 188 NGMLINDKKVYVG-----------LFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQ 236
NG + +++ V L V E SP VYV NL+++ T E L+
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPY--KVYVGNLAKTVTKEMLEN 195
Query: 237 LFAPFGVITSATVMKDVNGNSKC--FGFVNFESPDSAAAAVEKLNGTTINDDKV 288
LF+ G + SA V + V G SK FGFV F S + AA+ LN + + K+
Sbjct: 196 LFSEKGKVVSAKVSR-VPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKI 248
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 85/182 (46%), Gaps = 30/182 (16%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
VY+ N+ + T+E L +L G + VM D +G S+ FGF +S + A A VEKL
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISR---YEKLQGAN---------LYV 326
NG T+ GR E++ ++ I+ LQ + +YV
Sbjct: 138 NGNTVE-------GR---------EIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYV 181
Query: 327 KNLDDNINDEKLKDLFSEFGTITSFKV-MLDSYGNSKGSGFVAFSTPEEANQAMTEMNGK 385
NL + E L++LFSE G + S KV + S G GFV FS+ E+ A+ +N
Sbjct: 182 GNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNS 241
Query: 386 LV 387
L+
Sbjct: 242 LL 243
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
V+I N+ ++ N+ L G V +V D SG+S+ +GF + E A + KL
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 188 NGMLINDKKVYVG-----------LFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQ 236
NG + +++ V L V E SP VYV NL+++ T E L+
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPY--KVYVGNLAKTVTKEMLEN 195
Query: 237 LFAPFGVITSATVMKDVNGNSKC--FGFVNFESPDSAAAAVEKLNGTTINDDKV 288
LF+ G + SA V + V G SK FGFV F S + AA+ LN + + K+
Sbjct: 196 LFSEKGKVVSAKVSR-VPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKI 248
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P A L+VG+L +V+ L LF Q + V ++ S G+ +V + ++A
Sbjct: 109 PPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAE 168
Query: 95 NALELLNFTPVNGKPIRIMFS-------QRDPSIRKSGYANVFIKNLDTSIDNKALHDTF 147
A+E N VNG+ + + + +R P + + + +++ NL +D+ L F
Sbjct: 169 KAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAF-RIYVGNLPWDVDSGRLERLF 227
Query: 148 AAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQ 206
+ G V+ +V D +G+S+G+GFVQ N+ AI L+G + + + V + +
Sbjct: 228 SEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNV---AE 284
Query: 207 ERGR 210
ER R
Sbjct: 285 ERTR 288
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 13/191 (6%)
Query: 215 PKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGN-SKCFGFVNFESPDSAAA 273
P+ ++V NL + L LF G + + V+ + + + S+ FGFV + + A
Sbjct: 110 PEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEK 169
Query: 274 AVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNI 333
AVEK N +N ++ A R + E + R RI YV NL ++
Sbjct: 170 AVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRI-----------YVGNLPWDV 218
Query: 334 NDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPL 392
+ +L+ LFSE G + +V+ D G S+G GFV S E N A+ ++G+ + + +
Sbjct: 219 DSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAI 278
Query: 393 YVAVAQRKEDR 403
V VA+ + R
Sbjct: 279 KVNVAEERTRR 289
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 51 NEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELLNFTPVNGKPI 110
E +Y+ FS+ ++ +R+ D+ R S G YV F + A+ L+ P+ G+P+
Sbjct: 243 TERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPV 301
Query: 111 RIMFSQRDPSIRKS----------------GYANVFIKNLDTSIDNKALHDTFAAFGPVL 154
+ S+ + ++ +S G +++ NL ++ L F +FG V
Sbjct: 302 MVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRKVFESFGSVE 361
Query: 155 SCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGML 191
+V D +G KG+GFVQF E A+NA+N LNG L
Sbjct: 362 LVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQL 397
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 14/215 (6%)
Query: 197 VYVGLFVRHQERGRANGSPKFT------NVYVKNLSESCTDEDLKQLFAPFGVITSATVM 250
VY RH+++ P+ V+ ++ T+ D+ + F+ G + ++
Sbjct: 204 VYAYWRKRHKDKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRII 263
Query: 251 KD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFE 309
D ++ S+ G+V F S A+ L+G + V+ K ++ A
Sbjct: 264 MDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGA 322
Query: 310 QERISRYEKLQGAN-LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVA 368
+ Y GA LYV NL N++++ L+ +F FG++ +V D G KG GFV
Sbjct: 323 GGMLGPYSG--GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQ 380
Query: 369 FSTPEEANQAMTEMNGKL--VGRKPLYVAVAQRKE 401
F+ E+A A+ +NG+L GR AV + E
Sbjct: 381 FARLEDARNALN-LNGQLEIAGRAIKVSAVTDQTE 414
>AT2G44710.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18432902-18436629 FORWARD LENGTH=809
Length = 809
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/289 (20%), Positives = 132/289 (45%), Gaps = 25/289 (8%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
++VG L+ +E L +F + ++ +R+ ++ + S G A++ FA + A A++ L
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 101 NFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP--VLSCKV 158
+NGK + SQ + ++ F+ N+ +AL + +G + +
Sbjct: 276 KSPMINGKKCGVTASQDNDTL--------FVGNICKIWTPEALREKLKHYGVENMDDITL 327
Query: 159 AVDAS--GQSKGYGFVQFDNDEAAQNAINKLN------GMLINDKKVYVGLFVRHQERGR 210
D++ ++GY F++F + A +A +L G+ K + F+ ++
Sbjct: 328 VEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIM 387
Query: 211 ANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPD 269
A + +++ L S +E ++ L P+G + + +++ + K FGFV F++ +
Sbjct: 388 A----QVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHE 443
Query: 270 SAAAAVEKLNGTTI--NDDKVLYAGRAQRKAEREAELRAKFEQERISRY 316
+A + + +N + + +DK R R ++ + R ++ SR+
Sbjct: 444 AAVSCAKFINNSELGEGEDKAKVRARLSRPLQKAGKGRQSSRSDQRSRH 492
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 117/273 (42%), Gaps = 29/273 (10%)
Query: 122 RKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAA 180
RK +F+ +LD + L F G V ++ + + +SKG F++F E A
Sbjct: 209 RKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQA 268
Query: 181 QNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAP 240
+ A+ +L +IN KK V S ++V N+ + T E L++
Sbjct: 269 KRAVKELKSPMINGKKCGV------------TASQDNDTLFVGNICKIWTPEALREKLKH 316
Query: 241 FGV--ITSATVMKDVNG--NSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQR 296
+GV + T+++D N ++ + F+ F S A A ++L + D + + +
Sbjct: 317 YGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRL----VKKDVMFGVEKPAK 372
Query: 297 KAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD 356
+ ++ L E E ++ Q +++ L + N+E+++DL +G + ++ +
Sbjct: 373 VSFTDSFL--DLEDEIMA-----QVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARN 425
Query: 357 -SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVG 388
K GFV F T E A +N +G
Sbjct: 426 MPSARRKDFGFVTFDTHEAAVSCAKFINNSELG 458
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
AN+FI N+ +++ L TF FG VLS KV VD A+G SK +GF+ +D+ AAQNAIN
Sbjct: 330 ANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389
Query: 186 KLNGMLINDKKVYVGL 201
+NG ++ KK+ V L
Sbjct: 390 TMNGCQLSGKKLKVQL 405
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 117/264 (44%), Gaps = 45/264 (17%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSK---CFGFVNFESPDSAAAAVE 276
++V + + T+ L LF F ++ ++K+ + CF
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCF---------------- 57
Query: 277 KLNGTTIND-DKVLYAGRAQRKAE-REAELRAKFEQERISRYEKLQGANLYVKNLDDNIN 334
L T D DKV+ + ++ + L+ K+ + R E L+V L N++
Sbjct: 58 -LTCPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLEH----KLFVGMLPKNVS 112
Query: 335 DEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLV---GRKP 391
+ +++ LFSE+GTI +++ S SKG F+ + + E+A AM +NG+ + P
Sbjct: 113 ETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVP 172
Query: 392 LYVAVAQRKEDRKAR----LQAHFAQI--QVPGGMAPLPAG-IPGYHAGTPRLAPQQLYY 444
L V A +++R+AR +Q+H +++ Q P LP +P Y+ Y+
Sbjct: 173 LIVKWADTEKERQARRLLKVQSHVSRLDPQNPSMFGALPMSYVPPYNGYG--------YH 224
Query: 445 GQGSPGFM-PPQPAGYGFQQQMLP 467
G+ G+M PP + F + P
Sbjct: 225 VPGTYGYMLPPIQTQHAFHNVISP 248
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 215 PKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAA 273
P N+++ N+ D++L F PFG + SA V D G SKCFGF++++S +A
Sbjct: 327 PAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQN 386
Query: 274 AVEKLNGTTINDDKV 288
A+ +NG ++ K+
Sbjct: 387 AINTMNGCQLSGKKL 401
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 74/155 (47%), Gaps = 6/155 (3%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDA---ANAL 97
L+VG + ++ E QL LF + + + + + +++T R+ G ++ +DA N+
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINSF 73
Query: 98 ELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCK 157
P P+++ ++ D + + + +F+ L ++ + F+ +G + +
Sbjct: 74 HNKKTLPGASSPLQVKYA--DGELERLEH-KLFVGMLPKNVSETEVQSLFSEYGTIKDLQ 130
Query: 158 VAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLI 192
+ + SKG F+++++ E A A+ LNG I
Sbjct: 131 ILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHI 165
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
AN+FI N+ +++ L TF FG VLS KV VD A+G SK +GF+ +D+ AAQNAIN
Sbjct: 339 ANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398
Query: 186 KLNGMLINDKKVYVGL 201
+NG ++ KK+ V L
Sbjct: 399 TMNGCQLSGKKLKVQL 414
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 117/266 (43%), Gaps = 40/266 (15%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLN 279
++V + + T+ L LF F ++ ++K E A L
Sbjct: 14 LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIK--------------EKTTRAPRGCCFLT 59
Query: 280 GTTIND-DKVLYAGRAQRKAE-REAELRAKFEQERISRYEKLQGA-----NLYVKNLDDN 332
T D DKV+ + ++ + L+ K+ + R + L + L+V L N
Sbjct: 60 CPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKN 119
Query: 333 INDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLV---GR 389
+++ +++ LFSE+GTI +++ S SKG F+ + + E+A AM +NG+ +
Sbjct: 120 VSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGAN 179
Query: 390 KPLYVAVAQRKEDRKAR----LQAHFAQI--QVPGGMAPLPAG-IPGYHAGTPRLAPQQL 442
PL V A +++R+AR +Q+H +++ Q P LP +P Y+
Sbjct: 180 VPLIVKWADTEKERQARRLLKVQSHVSRLDPQNPSMFGALPMSYVPPYNGYG-------- 231
Query: 443 YYGQGSPGFM-PPQPAGYGFQQQMLP 467
Y+ G+ G+M PP + F + P
Sbjct: 232 YHVPGTYGYMLPPIQTQHAFHNVISP 257
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 215 PKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAA 273
P N+++ N+ D++L F PFG + SA V D G SKCFGF++++S +A
Sbjct: 336 PAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQN 395
Query: 274 AVEKLNGTTINDDKV 288
A+ +NG ++ K+
Sbjct: 396 AINTMNGCQLSGKKL 410
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 5/170 (2%)
Query: 37 ANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANA 96
N LY G+L NV+ A L + A + V ++ S G+A+V +N +D
Sbjct: 83 VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 142
Query: 97 LELLNFTPVNGKPIRIMFSQRDPSIRKSGY----ANVFIKNLDTSIDNKALHDTFAAFGP 152
++ L+ T G+ +++ F+ + ++ Y +F+ NL ++ +++L F G
Sbjct: 143 IDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGD 202
Query: 153 VLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGL 201
V+ +V D +G+S+GYGFV + + + A+ L+G + + + V L
Sbjct: 203 VVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNL 252
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVE 276
T +Y NL + L Q+ F V+ + + G S+ F FV + + ++
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKL---QGANLYVKNLDDNI 333
L+GT Y GRA L+ F + E L L+V NL +
Sbjct: 145 NLDGTE-------YLGRA---------LKVNFADKPKPNKEPLYPETEHKLFVGNLSWTV 188
Query: 334 NDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPL 392
E L F E G + +V+ D G S+G GFV +S+ E A+ ++G + + +
Sbjct: 189 TSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAI 248
Query: 393 YVAVAQRKE 401
V +AQ K+
Sbjct: 249 RVNLAQGKK 257
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 15/178 (8%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L+V +L +++ + +LF Q + ++ + R Q + G+A+V A+ ++A A++
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIR-QKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 101 NFTPVNGKPIRIMFSQR--DPSIRK----------SGYANVFIKNLDTSIDNKALHDTFA 148
+ V+G+ I + F++R P+ + +++ NL + L + F
Sbjct: 156 DTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFT 215
Query: 149 A--FGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVR 204
A F PV + V D G+S GYGFV F E A+NAI KLNG I + + + +R
Sbjct: 216 AADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLR 273
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 11/184 (5%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLN 279
++V NL S + D+ +LF G + + +++ +G ++ F FV S + A AA++K
Sbjct: 97 LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF- 155
Query: 280 GTTINDDKVLYAGR--AQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
D +GR + A R + K + S LYV NL
Sbjct: 156 ------DTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTH 209
Query: 338 LKDLFS--EFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
L++LF+ +F +++ V D G S G GFV+F+T EEA A+T++NGK + +P+ +
Sbjct: 210 LRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLK 269
Query: 396 VAQR 399
+ R
Sbjct: 270 FSLR 273
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%)
Query: 128 NVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINK 186
+ + + ID+ L D + FG + C V D ++G+S+G+G+V F + E A+NA+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 187 LNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITS 246
+ + ++ + V + +E + + K T ++V + S ++ D + F +G IT
Sbjct: 64 EH--FLGNRILEVKVATPKEEMRQP--AKKVTRIFVARIPSSVSESDFRSHFERYGEITD 119
Query: 247 ATVMKDVNGNS-KCFGFVNFESPDSAAAAVE---KLNGTTINDDKV 288
+ KD N + GF+ F S DS +E L GTT+ D+
Sbjct: 120 LYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRA 165
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 1/151 (0%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L V + +++ L D S+ + V +D++ S G+ YV FA+A+DA NAL+
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE 64
Query: 101 NFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAV 160
+F +++ + + +F+ + +S+ F +G + +
Sbjct: 65 HFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPK 124
Query: 161 DA-SGQSKGYGFVQFDNDEAAQNAINKLNGM 190
D S Q +G GF+ F + ++ ++ + + +
Sbjct: 125 DYNSKQHRGIGFITFSSADSVEDLMEDTHDL 155
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 94/217 (43%), Gaps = 37/217 (17%)
Query: 118 DPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF---GPVLSCKVAVDASGQ---SKGYGF 171
DP + +S NV KNL ++ L F G +LS + + S GYGF
Sbjct: 595 DPDVTESNVLNV--KNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGF 652
Query: 172 VQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRA-------NGSPKFTNVYVKN 224
V+FD+ E A + L G +++ L +R E R+ N T ++VKN
Sbjct: 653 VEFDSVETATSVYRDLQGTVLDGH----ALILRFCENKRSDKVGKDSNKDKPCTKLHVKN 708
Query: 225 LSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTI- 283
++ T +L+QLF+PFG I S + K G + FV F + A A + L T
Sbjct: 709 IAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFY 768
Query: 284 ---------NDDKVLYAGRAQRKAEREAELRAKFEQE 311
NDD + A R +R A AKF++E
Sbjct: 769 GRHLVLEWANDDNSMEAIR-KRSA-------AKFDEE 797
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 16/160 (10%)
Query: 222 VKNLSESCTDEDLKQLFAPF---GVITSATVMKDVNGN---SKCFGFVNFESPDSAAAAV 275
VKNLS TDE LK+ F G I S T++K S +GFV F+S ++A +
Sbjct: 606 VKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVY 665
Query: 276 EKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNIND 335
L GT ++ ++ +++++ + S +K L+VKN+
Sbjct: 666 RDLQGTVLDGHALILRFCENKRSDKVG---------KDSNKDK-PCTKLHVKNIAFEATK 715
Query: 336 EKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEA 375
+L+ LFS FG I S ++ + G G FV F T +EA
Sbjct: 716 RELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEA 755
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 322 ANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTE 381
+ + VKNL ++ +++L+D FS+ G IT K+M + G S+ GF+ F + +EA QA+
Sbjct: 2 SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKY 61
Query: 382 MNGKLVGRKPLYVAVAQRKEDRKA 405
N +G + V +A + D A
Sbjct: 62 FNNTYLGTSLIIVEIAHKVGDENA 85
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%)
Query: 128 NVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINK 186
+ + + ID+ L D + FG + C V D ++G+S+G+G+V F + E A+NA+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 187 LNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITS 246
+ + ++ + V + +E + + K T ++V + S ++ D + F +G IT
Sbjct: 64 EH--FLGNRILEVKVATPKEEMRQP--AKKVTRIFVARIPSSVSESDFRSHFERYGEITD 119
Query: 247 ATVMKDVNGNS-KCFGFVNFESPDSAAAAVE---KLNGTTINDDKV 288
+ KD N + GF+ F S DS +E L GTT+ D+
Sbjct: 120 LYMPKDYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTTVAVDRA 165
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 1/151 (0%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L V + +++ L D S+ + V +D++ S G+ YV FA+A+DA NAL+
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE 64
Query: 101 NFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAV 160
+F +++ + + +F+ + +S+ F +G + +
Sbjct: 65 HFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPK 124
Query: 161 DA-SGQSKGYGFVQFDNDEAAQNAINKLNGM 190
D S Q +G GF+ F + ++ ++ + + +
Sbjct: 125 DYNSKQHRGIGFITFSSADSVEDLMEDTHDL 155
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
AN+FI N+ ++ L F +FG VLS KV VD A+G SK +GFV +D+ AAQNAI+
Sbjct: 349 ANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAID 408
Query: 186 KLNGMLINDKKVYVGLFVRHQERGRANGSP 215
+NG + KK+ V L +R NG P
Sbjct: 409 MMNGRHLGGKKLKVQL-----KRDSNNGQP 433
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 25/205 (12%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVE 276
++V + + ++ L LF F V+ ++KD + S+ F+ S + A V
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLV- 76
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
++ K L + L+ K+ + R E L+V L N+++
Sbjct: 77 ----NACHNKKTLPGANSL--------LQVKYADGELERLEH----KLFVGMLPKNVSEA 120
Query: 337 KLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNG--KLVGRK-PLY 393
+++ LFS++GTI +++ + SKG F+ + T E+A AM +NG K+ G PL
Sbjct: 121 EVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLV 180
Query: 394 VAVAQRKEDRKAR----LQAHFAQI 414
V A + +R R Q+H A++
Sbjct: 181 VKWADTERERHTRRLQKAQSHIARL 205
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 215 PKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAA 273
P+ N+++ N+ D++L F FG++ SA V D G SKCFGFV+++S +A
Sbjct: 346 PEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQN 405
Query: 274 AVEKLNGTTINDDKV 288
A++ +NG + K+
Sbjct: 406 AIDMMNGRHLGGKKL 420
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 313 ISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFST 371
+ + E +GANL++ N+ D++L F FG + S KV +D + G SK GFV++ +
Sbjct: 340 VVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDS 399
Query: 372 PEEANQAMTEMNGKLVGRKPLYVAVAQRKED 402
A A+ MNG+ +G K L V Q K D
Sbjct: 400 QAAAQNAIDMMNGRHLGGKKLKV---QLKRD 427
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDA---A 94
+ L+VG + +++E+QL LF + A + + + +D+ R+S G ++ + ++A
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLV 76
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVL 154
NA P +++ ++ D + + + +F+ L ++ + F+ +G +
Sbjct: 77 NACHNKKTLPGANSLLQVKYA--DGELERLEH-KLFVGMLPKNVSEAEVQSLFSKYGTIK 133
Query: 155 SCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNG 189
++ A SKG F++++ E A +A+ +NG
Sbjct: 134 DLQILRGAQQTSKGCAFLKYETKEQAVSAMESING 168
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 89/183 (48%), Gaps = 16/183 (8%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
++V +S T E F FG + + +M D + GN + FGFV F +A A + L
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFAD---SAVAEKVL 124
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
+ DD+ + R + +++ +++A +S+ K+ +V L + +++L
Sbjct: 125 EEDHVIDDRKVDLKRTLPRGDKDTDIKA------VSKTRKI-----FVGGLPPLLEEDEL 173
Query: 339 KDLFSEFGTITSFKVMLDSY-GNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVA 397
K+ F +G I ++M D + G S+G GFV F T + ++ ++ +G K + + A
Sbjct: 174 KNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRA 233
Query: 398 QRK 400
+ K
Sbjct: 234 EPK 236
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
+F+ + + + F FG V+ + D +G +G+GFV F + A+ +
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
Query: 186 KLNGMLINDKKVYVGLFV-RHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVI 244
+ + +I+D+KV + + R + K ++V L +++LK F +G I
Sbjct: 126 EDH--VIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDI 183
Query: 245 TSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAE 303
+M D + G S+ FGFV F++ DS D++ G+ +++ E
Sbjct: 184 IEHQIMYDHHTGRSRGFGFVTFQTEDSV--------------DRLFSDGKVHELGDKQVE 229
Query: 304 LRAKFEQERISR 315
++ + E +R R
Sbjct: 230 IK-RAEPKRTGR 240
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 14/248 (5%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +Y+G + + E L + ++ +R+ R++ GYA+V F + AA
Sbjct: 88 PPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAA 147
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-- 152
A++ LN T GK I+ +Q +F+ N+ + + GP
Sbjct: 148 EAIDTLNNTDFRGKRIKCSTTQ--------AKHRLFLGNVPRNWMESDIKKAANRIGPGV 199
Query: 153 -VLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLN--GMLINDKKVYVGLFVRHQERG 209
++ G+++G+ F+++ N A+ + K++ ++D V G
Sbjct: 200 QIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGG 259
Query: 210 RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKC-FGFVNFESP 268
+ + + +Y+KNL T E LK LF G I + G +GFV++
Sbjct: 260 GDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAER 319
Query: 269 DSAAAAVE 276
S A++
Sbjct: 320 TSVMRALK 327
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 14/248 (5%)
Query: 35 PFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAA 94
P + +Y+G + + E L + ++ +R+ R++ GYA+V F + AA
Sbjct: 88 PPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAA 147
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGP-- 152
A++ LN T GK I+ +Q +F+ N+ + + GP
Sbjct: 148 EAIDTLNNTDFRGKRIKCSTTQ--------AKHRLFLGNVPRNWMESDIKKAANRIGPGV 199
Query: 153 -VLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLN--GMLINDKKVYVGLFVRHQERG 209
++ G+++G+ F+++ N A+ + K++ ++D V G
Sbjct: 200 QIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGG 259
Query: 210 RANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKC-FGFVNFESP 268
+ + + +Y+KNL T E LK LF G I + G +GFV++
Sbjct: 260 GDSSASQVKALYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAER 319
Query: 269 DSAAAAVE 276
S A++
Sbjct: 320 TSVMRALK 327
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 27/166 (16%)
Query: 51 NEAQLYDLFSQLAQIV---------SIRVCRDQTKRSSLGYAYVNFANAQDAANALELLN 101
E +Y+ FS+ ++ +R+ D+ R S G YV F + A+ L+
Sbjct: 223 TERDVYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALS 281
Query: 102 FTPVNGKPIRIMFSQRDPSIRKS----------------GYANVFIKNLDTSIDNKALHD 145
P+ G+P+ + S+ + ++ +S G +++ NL ++ L
Sbjct: 282 GQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSEDDLRK 341
Query: 146 TFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGML 191
F +FG V +V D +G KG+GFVQF E A+NA+N LNG L
Sbjct: 342 VFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQL 386
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 94/220 (42%), Gaps = 23/220 (10%)
Query: 201 LFVRHQERGRANGSPKFT------NVYVKNLSESCTDEDLKQLFAP----------FGVI 244
F+RH+++ P+ V+ ++ T+ D+ + F+ F V
Sbjct: 188 CFIRHKDKKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVR 247
Query: 245 TSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAEL 304
+M ++ S+ G+V F S A+ L+G + V+ K ++
Sbjct: 248 DVRIIMDRISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQSTT 306
Query: 305 RAKFEQERISRYEKLQGAN-LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKG 363
A + Y GA LYV NL N++++ L+ +F FG++ +V D G KG
Sbjct: 307 AAAGAGGMLGPYSG--GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKG 364
Query: 364 SGFVAFSTPEEANQAMTEMNGKL--VGRKPLYVAVAQRKE 401
GFV F+ E+A A+ +NG+L GR AV + E
Sbjct: 365 FGFVQFARLEDARNALN-LNGQLEIAGRAIKVSAVTDQTE 403
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 24/240 (10%)
Query: 200 GLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSK 258
L R + N +YV +S++ T+ D++Q+F +G +T + KD + G
Sbjct: 92 SLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERA 151
Query: 259 CFGFVNFESPDSAAAAVEKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEK 318
+ F+ ++ + AA+ L ++ + G R AE E+ERI +
Sbjct: 152 AYCFIKYKKVEEGNAAIAALT------EQFTFPGEMLPVKVRFAEA----ERERIG-FAP 200
Query: 319 LQ---GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEA 375
+Q LYV+ L+ ++ ++FS +G I + LD +G FV FS E A
Sbjct: 201 VQLPDNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMA 260
Query: 376 NQAMTEMNGKLVGR---KPLYVAVAQRKEDRKARLQAHFAQIQVPGGMAPLPAGIPGYHA 432
A+ +NG R +PL V A + +K RL + P M P +H+
Sbjct: 261 LAAIKALNGLFTIRGSDQPLIVRFA---DPKKPRLGEQRSTFNTPPAMQHF---DPNWHS 314
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 39 ASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALE 98
A LYV + E + +F + + I + +D+ Y ++ + ++ A+
Sbjct: 110 AKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIA 169
Query: 99 LLN--FT-PVNGKPIRIMFSQRDPSIRKSGYANV--------FIKNLDTSIDNKALHDTF 147
L FT P P+++ F++ + + G+A V +++ L+ +++ F
Sbjct: 170 ALTEQFTFPGEMLPVKVRFAEAE--RERIGFAPVQLPDNPKLYVRCLNKQTTKMEVNEVF 227
Query: 148 AAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGML 191
+ +G + +A+D +GY FVQF E A AI LNG+
Sbjct: 228 SRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLF 271
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 215 PKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAA 273
P+ +YV N+ S L +F PFG + S V ++ G S+ G+V S +SA
Sbjct: 105 PRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKI 164
Query: 274 AVEKLNGTTI--NDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDD 331
A+ L+GT + + +V Y+ R E+ ++I YE +YV NL
Sbjct: 165 AIASLDGTEVGGREMRVRYSVDMNPGTRRNPEV-LNSTPKKILMYESQH--KVYVGNLPW 221
Query: 332 NINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRK 390
+ L++ FS+FGTI S +V+ D G ++ F++F++ EE + A++ + GR+
Sbjct: 222 FTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRR 281
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 16/191 (8%)
Query: 113 MFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGF 171
+ S+ +P ++K +++ N+ S D L D F FG V+S +V+ + +G+S+G G+
Sbjct: 95 VVSKAEP-VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGY 153
Query: 172 VQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGR-----ANGSPKFT-------N 219
V + +A+ AI L+G + +++ V V R N +PK
Sbjct: 154 VTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHK 213
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
VYV NL + L+ F+ FG I S V+ D G ++ F F++F S + AA+
Sbjct: 214 VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-F 272
Query: 279 NGTTINDDKVL 289
NGT +++
Sbjct: 273 NGTQYEGRRII 283
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 39 ASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALE 98
LYV ++ + + AQL D+F ++S+ V R+ S G YV + A A+
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIA 167
Query: 99 LLNFTPVNGKPIRIMFS-------QRDPSIRKS---------GYANVFIKNLDTSIDNKA 142
L+ T V G+ +R+ +S +R+P + S V++ NL
Sbjct: 168 SLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDG 227
Query: 143 LHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
L + F+ FG ++S +V D +G+++ + F+ F + E A++ NG +++ V
Sbjct: 228 LRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNGTQYEGRRIIV 284
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 37 ANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANA 96
+ L+VG + E ++ F Q ++ + + +D+ G +V +A ++DA A
Sbjct: 118 STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 177
Query: 97 LELLN---FTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPV 153
+ L+ P P+++ ++ + + +F+ +L+ K + + F FG V
Sbjct: 178 IRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHV 237
Query: 154 LSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNG 189
+ D QS+G GFV++ + E A AI+ LNG
Sbjct: 238 EDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAAAAVEKL 278
++V ++ + T+E+++ F G + ++KD G + FV + + A A+ L
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
+ +++ G R A+ E+ERI E L+V +L+ ++++
Sbjct: 182 H------NQITLPGGTGPVQVRYAD----GERERIGTLE----FKLFVGSLNKQATEKEV 227
Query: 339 KDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGR---KPLYVA 395
+++F +FG + +M D Y S+G GFV +S+ E A A+ +NG R +PL V
Sbjct: 228 EEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVR 287
Query: 396 VAQRKEDR 403
A+ K +
Sbjct: 288 FAEPKRPK 295
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 123 KSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQ 181
+S +F+ ++ + + + F G VL + D +GQ +G FV++ + A
Sbjct: 116 RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 175
Query: 182 NAINKL-NGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAP 240
AI L N + + V + ER R G+ +F ++V +L++ T+++++++F
Sbjct: 176 RAIRALHNQITLPGGTGPVQVRYADGERERI-GTLEF-KLFVGSLNKQATEKEVEEIFLQ 233
Query: 241 FGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGT 281
FG + +M+D S+ GFV + S ++A AA++ LNGT
Sbjct: 234 FGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 36/193 (18%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAI- 184
+FI + L D F +FG VL + D A+G+++G+GFV F + A+ +
Sbjct: 6 CKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVL 65
Query: 185 --NKLNGMLINDKKVYVGL------------------------FVRHQERGRANGSPKFT 218
+ ++G ++ D VY L V ++ GSP +
Sbjct: 66 LKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPGPS 125
Query: 219 N---VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAA 274
N ++V L+ S T+ + K+ FA FG+IT VM D + FGF++++S ++
Sbjct: 126 NSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKV 185
Query: 275 VEK----LNGTTI 283
++K LNG +
Sbjct: 186 LQKTFHELNGKMV 198
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 23/191 (12%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAV--E 276
+++ +S +++ L+ F FG + A +MKD G ++ FGFV F P+ A V +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 277 KLNGTTINDDKVLY--AGRAQRKAEREAELRAKFEQERISRY------EKLQGA------ 322
+ I D ++Y R+ + + AK R LQG+
Sbjct: 68 HIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNS 127
Query: 323 -NLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNS-KGSGFVAFSTPEEANQAMT 380
++V L ++ + + K F++FG IT VM D +G GF+++ + E ++ +
Sbjct: 128 KKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQ 187
Query: 381 ----EMNGKLV 387
E+NGK+V
Sbjct: 188 KTFHELNGKMV 198
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 12/152 (7%)
Query: 51 NEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELLNFTPVNGKPI 110
E +Y+ FS+ ++ +R+ D+ R S G Y+ F + A+ L + G+P+
Sbjct: 180 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLFL-GQPV 238
Query: 111 RIMFSQRDPSIRKSGYANV----------FIKNLDTSIDNKALHDTFAAFGPVLSCKVAV 160
+ S+ + ++ +S V ++ NL ++ L F AFGPV ++ +
Sbjct: 239 MVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPL 298
Query: 161 D-ASGQSKGYGFVQFDNDEAAQNAINKLNGML 191
D +GQ KG+GF+QF E ++ A LNG L
Sbjct: 299 DPETGQCKGFGFIQFVQLEHSKAAQIALNGKL 330
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 8/181 (4%)
Query: 215 PKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD--VNGNSKCFGFVNFESPDSAA 272
P+ +YV N+ S L +F PFG + S V+ G S+ G+V S +SA
Sbjct: 105 PRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAK 164
Query: 273 AAVEKLNGTTI--NDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLD 330
A+ L+GT + + +V Y+ R E+ ++I YE +YV NL
Sbjct: 165 IAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEV-LNSTPKKILMYESQH--KVYVGNLP 221
Query: 331 DNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGR 389
+ L++ FS+FGTI S +V+ D G ++ F++F++ EE + A++ + GR
Sbjct: 222 WFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGR 281
Query: 390 K 390
+
Sbjct: 282 R 282
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 17/192 (8%)
Query: 113 MFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD--ASGQSKGYG 170
+ S+ +P ++K +++ N+ S D L D F FG V+S +V +G+S+G G
Sbjct: 95 VVSKAEP-VKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSG 153
Query: 171 FVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGR-----ANGSPKFT------- 218
+V + +A+ AI L+G + +++ V V R N +PK
Sbjct: 154 YVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQH 213
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEK 277
VYV NL + L+ F+ FG I S V+ D G ++ F F++F S + AA+
Sbjct: 214 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS- 272
Query: 278 LNGTTINDDKVL 289
NGT +++
Sbjct: 273 FNGTQYEGRRII 284
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 19/179 (10%)
Query: 39 ASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVC-RDQTKRSSLGYAYVNFANAQDAANAL 97
LYV ++ + + AQL D+F ++S+ V R+ S G YV + A A+
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAI 167
Query: 98 ELLNFTPVNGKPIRIMFS-------QRDPSIRKS---------GYANVFIKNLDTSIDNK 141
L+ T V G+ +R+ +S +R+P + S V++ NL
Sbjct: 168 ASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPD 227
Query: 142 ALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
L + F+ FG ++S +V D +G+++ + F+ F + E A++ NG +++ V
Sbjct: 228 GLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNGTQYEGRRIIV 285
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 37 ANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANA 96
+ L+VG + E ++ F Q ++ + + +D+ G +V +A ++DA A
Sbjct: 118 STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 177
Query: 97 LELLN---FTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPV 153
+ L+ P P+++ ++ + + +F+ +L+ K + + F FG V
Sbjct: 178 IRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHV 237
Query: 154 LSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNG 189
+ D QS+G GFV++ + E A AI+ LNG
Sbjct: 238 EDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAAAAVEKL 278
++V ++ + T+E+++ F G + ++KD G + FV + + A A+ L
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
+ +++ G R A+ E+ERI E L+V +L+ ++++
Sbjct: 182 H------NQITLPGGTGPVQVRYAD----GERERIGTLE----FKLFVGSLNKQATEKEV 227
Query: 339 KDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGR---KPLYVA 395
+++F +FG + +M D Y S+G GFV +S+ E A A+ +NG R +PL V
Sbjct: 228 EEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVR 287
Query: 396 VAQRKEDR 403
A+ K +
Sbjct: 288 FAEPKRPK 295
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 123 KSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQ 181
+S +F+ ++ + + + F G VL + D +GQ +G FV++ + A
Sbjct: 116 RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 175
Query: 182 NAINKL-NGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAP 240
AI L N + + V + ER R G+ +F ++V +L++ T+++++++F
Sbjct: 176 RAIRALHNQITLPGGTGPVQVRYADGERERI-GTLEF-KLFVGSLNKQATEKEVEEIFLQ 233
Query: 241 FGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGT 281
FG + +M+D S+ GFV + S ++A AA++ LNGT
Sbjct: 234 FGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 102/224 (45%), Gaps = 32/224 (14%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAAAAVEKL 278
++V ++ + T+E+++ F G + ++KD G + FV + + A A+ L
Sbjct: 47 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 106
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
+ +++ G R A+ E+ERI E L+V +L+ ++++
Sbjct: 107 H------NQITLPGGTGPVQVRYAD----GERERIGTLE----FKLFVGSLNKQATEKEV 152
Query: 339 KDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGR---KPLYVA 395
+++F +FG + +M D Y S+G GFV +S+ E A A+ +NG R +PL V
Sbjct: 153 EEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVR 212
Query: 396 VAQRKEDRKARLQAHFAQIQVPGGMAPLPAGI---PGYHAGTPR 436
A+ K + + MAP P G+ P + A PR
Sbjct: 213 FAEPKRPKPGESRE----------MAP-PVGLGSGPRFQASGPR 245
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 37 ANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANA 96
+ L+VG + E ++ F Q ++ + + +D+ G +V +A ++DA A
Sbjct: 43 STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 102
Query: 97 LELLN---FTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPV 153
+ L+ P P+++ ++ + + +F+ +L+ K + + F FG V
Sbjct: 103 IRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHV 162
Query: 154 LSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNG 189
+ D QS+G GFV++ + E A AI+ LNG
Sbjct: 163 EDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 198
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 123 KSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQ 181
+S +F+ ++ + + + F G VL + D +GQ +G FV++ + A
Sbjct: 41 RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 100
Query: 182 NAINKL-NGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAP 240
AI L N + + V + ER R G+ +F ++V +L++ T+++++++F
Sbjct: 101 RAIRALHNQITLPGGTGPVQVRYADGERERI-GTLEF-KLFVGSLNKQATEKEVEEIFLQ 158
Query: 241 FGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGT 281
FG + +M+D S+ GFV + S ++A AA++ LNGT
Sbjct: 159 FGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 199
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
+FI L N + F +G + + D +GQ +G+GF+ F + I
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 186 KLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVIT 245
+ +IN K+V + + G + K ++V + + T+++LK FA +G +
Sbjct: 79 DTH--VINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVV 136
Query: 246 SATVMKDVNGN-SKCFGFVNFESPDSAAAAVEKLNGTTINDDKV 288
V++D N S+ FGFV F+S + + K N + D +V
Sbjct: 137 EHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQV 180
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 83/166 (50%), Gaps = 17/166 (10%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEKL 278
+++ L + T+ + F +G IT + +M+D + G + FGF+ F P + V+K+
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP----SVVDKV 76
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
I D V+ Q + +R A Q + + +K+ +V + + +++L
Sbjct: 77 ----IEDTHVING--KQVEIKRTIPKGAGGNQSKDIKTKKI-----FVGGIPSTVTEDEL 125
Query: 339 KDLFSEFGTITSFKVMLDSYGN-SKGSGFVAFSTPEEANQAMTEMN 383
KD F+++G + +V+ D N S+G GFV F + E ++ +++ N
Sbjct: 126 KDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 77/169 (45%), Gaps = 17/169 (10%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
+++G L + F + +I + RD+ G+ ++ FA+ +E
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 101 NFTPVNGKPIRIMFS---------QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFG 151
+ +NGK + I + +D +K +F+ + +++ L D FA +G
Sbjct: 81 HV--INGKQVEIKRTIPKGAGGNQSKDIKTKK-----IFVGGIPSTVTEDELKDFFAKYG 133
Query: 152 PVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
V+ +V D + +S+G+GFV FD++E ++K N + + D +V +
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEI 182
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 39/251 (15%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVE 276
++V + + ++ L LF F V+ ++KD + S+ F+ S + A V
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLV- 76
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
++ K L + L+ K+ + R E L+V L N+++
Sbjct: 77 ----NACHNKKTLPGANSL--------LQVKYADGELERLEH----KLFVGMLPKNVSEA 120
Query: 337 KLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNG--KLVGRK-PLY 393
+++ LFS++GTI +++ + SKG F+ + T E+A AM +NG K+ G PL
Sbjct: 121 EVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLV 180
Query: 394 VAVAQRKEDRKAR----LQAHFAQI-----QVPGGMAPLPAG-IPGYHAGTPRLAPQQLY 443
V A + +R R Q+H A++ P LP G +P Y+ Y
Sbjct: 181 VKWADTERERHTRRLQKAQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYG--------Y 232
Query: 444 YGQGSPGFMPP 454
+ G+ G+M P
Sbjct: 233 HPPGTYGYMLP 243
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 76/155 (49%), Gaps = 6/155 (3%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDA---A 94
+ L+VG + +++E+QL LF + A + + + +D+ R+S G ++ + ++A
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLV 76
Query: 95 NALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVL 154
NA P +++ ++ D + + + +F+ L ++ + F+ +G +
Sbjct: 77 NACHNKKTLPGANSLLQVKYA--DGELERLEH-KLFVGMLPKNVSEAEVQSLFSKYGTIK 133
Query: 155 SCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNG 189
++ A SKG F++++ E A +A+ +NG
Sbjct: 134 DLQILRGAQQTSKGCAFLKYETKEQAVSAMESING 168
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 25/181 (13%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
+++ +S +++ L+ F FG + A +MKD G ++ FGFV F P+ A V
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGA-------NLYVKNLDD 331
+ I D K++ A +A + + F + S LQG+ ++V L
Sbjct: 68 H---IIDGKIVEAKKAVPRDD-----HVVFNKSNSS----LQGSPGPSNSKKIFVGGLAS 115
Query: 332 NINDEKLKDLFSEFGTITSFKVMLDSYGNS-KGSGFVAFSTPEEANQAMT----EMNGKL 386
++ + + K F++FG IT VM D +G GF+++ + E ++ + E+NGK+
Sbjct: 116 SVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKM 175
Query: 387 V 387
V
Sbjct: 176 V 176
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
+ L++G + +E +L D F +++ + +D+ + G+ +V FA+ A +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 98 ELLNFTPVNGKPI----------RIMFSQRDPSIRKS-GYAN---VFIKNLDTSIDNKAL 143
L + ++GK + ++F++ + S++ S G +N +F+ L +S+
Sbjct: 65 LLKHI--IDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122
Query: 144 HDTFAAFGPVLSCKVAVDASGQS-KGYGFVQFDNDEAA----QNAINKLNGMLINDK 195
FA FG + V D Q +G+GF+ +D++EA Q ++LNG ++ K
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 25/181 (13%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
+++ +S +++ L+ F FG + A +MKD G ++ FGFV F P+ A V
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGA-------NLYVKNLDD 331
+ I D K++ A +A + + F + S LQG+ ++V L
Sbjct: 68 H---IIDGKIVEAKKAVPRDD-----HVVFNKSNSS----LQGSPGPSNSKKIFVGGLAS 115
Query: 332 NINDEKLKDLFSEFGTITSFKVMLDSYGNS-KGSGFVAFSTPEEANQAMT----EMNGKL 386
++ + + K F++FG IT VM D +G GF+++ + E ++ + E+NGK+
Sbjct: 116 SVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKM 175
Query: 387 V 387
V
Sbjct: 176 V 176
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL 97
+ L++G + +E +L D F +++ + +D+ + G+ +V FA+ A +
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
Query: 98 ELLNFTPVNGKPI----------RIMFSQRDPSIRKS-GYAN---VFIKNLDTSIDNKAL 143
L + ++GK + ++F++ + S++ S G +N +F+ L +S+
Sbjct: 65 LLKHI--IDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122
Query: 144 HDTFAAFGPVLSCKVAVDASGQS-KGYGFVQFDNDEAA----QNAINKLNGMLINDK 195
FA FG + V D Q +G+GF+ +D++EA Q ++LNG ++ K
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVK 179
>AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 |
chr3:4849788-4851601 FORWARD LENGTH=327
Length = 327
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 16/173 (9%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
++YV D++ +V E L LFS Q+V R+C D S L +A+V FA+ Q A AL L
Sbjct: 142 TVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGD--PHSVLRFAFVEFADDQGAHEALSL 199
Query: 100 ----LNFTPVNGKPIRI-------MFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTF- 147
L F PV P + F R R+ ++ N+D + + + F
Sbjct: 200 GGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFE 259
Query: 148 AAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVG 200
+A G V ++ D S FV+F ++A +A+N +GM++ + + V
Sbjct: 260 SACGEVTRLRLLGD-QLHSTRIAFVEFALADSALSALN-CSGMVVGSQPIRVS 310
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINK- 186
+FI + + + L + F++FG V+ + D +G+++G+GFV F + A+ I +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 187 --LNGMLINDKKVY-------VGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQL 237
++G L+ KK V +G G + ++V L S T+ D K
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 238 FAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEKL 278
F FG T VM D N + FGF+ ++S + AVEK+
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEE----AVEKV 165
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 79/190 (41%), Gaps = 41/190 (21%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANA------- 90
N L++G + + NE +L + FS +++ + +D+T + G+ +V FA+
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 91 ------------------QDAANALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIK 132
+D N + N + + G P +++ +F+
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRK-----------IFVG 113
Query: 133 NLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQS-KGYGFVQFDNDEAAQNAI----NKL 187
L +S+ F FG V D + Q +G+GF+ +D++EA + + ++L
Sbjct: 114 GLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHEL 173
Query: 188 NGMLINDKKV 197
NG ++ K+
Sbjct: 174 NGKMVEVKRA 183
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINK- 186
+FI + + + L + F++FG V+ + D +G+++G+GFV F + A+ I +
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 187 --LNGMLINDKKVY-------VGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQL 237
++G L+ KK V +G G + ++V L S T+ D K
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTY 127
Query: 238 FAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEKL 278
F FG T VM D N + FGF+ ++S + AVEK+
Sbjct: 128 FEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEE----AVEKV 165
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 79/189 (41%), Gaps = 41/189 (21%)
Query: 38 NASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANA------- 90
N L++G + + NE +L + FS +++ + +D+T + G+ +V FA+
Sbjct: 5 NGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVI 64
Query: 91 ------------------QDAANALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIK 132
+D N + N + + G P +++ +F+
Sbjct: 65 TEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRK-----------IFVG 113
Query: 133 NLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQS-KGYGFVQFDNDEAAQNAI----NKL 187
L +S+ F FG V D + Q +G+GF+ +D++EA + + ++L
Sbjct: 114 GLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHEL 173
Query: 188 NGMLINDKK 196
NG ++ K+
Sbjct: 174 NGKMVEVKR 182
>AT2G43410.4 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 33/193 (17%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
N++V +L+ T+ DL +LF +G I TV +S+ F F+ + + A AA E L
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVY-----SSRGFAFIYYRHVEEAVAAKEAL 73
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
G +N ++ K E R ++ K +L+V + N++ + L
Sbjct: 74 QGANLNGSQI------------------KIEYARPAKPCK----SLWVGGIGPNVSKDDL 111
Query: 339 KDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQ 398
++ FS+FG I F+ + + + + F+ + ++A QA + MNGK +G L V +
Sbjct: 112 EEEFSKFGKIEDFRFLRE-----RKTAFIDYYEMDDALQAKS-MNGKPMGGSFLRVDFLR 165
Query: 399 RKEDRKARLQAHF 411
+ +K + +
Sbjct: 166 SQAPKKEQWAGSY 178
>AT2G43410.3 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 33/193 (17%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
N++V +L+ T+ DL +LF +G I TV +S+ F F+ + + A AA E L
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVY-----SSRGFAFIYYRHVEEAVAAKEAL 73
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
G +N ++ K E R ++ K +L+V + N++ + L
Sbjct: 74 QGANLNGSQI------------------KIEYARPAKPCK----SLWVGGIGPNVSKDDL 111
Query: 339 KDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQ 398
++ FS+FG I F+ + + + + F+ + ++A QA + MNGK +G L V +
Sbjct: 112 EEEFSKFGKIEDFRFLRE-----RKTAFIDYYEMDDALQAKS-MNGKPMGGSFLRVDFLR 165
Query: 399 RKEDRKARLQAHF 411
+ +K + +
Sbjct: 166 SQAPKKEQWAGSY 178
>AT2G43410.2 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=901
Length = 901
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 33/193 (17%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
N++V +L+ T+ DL +LF +G I TV +S+ F F+ + + A AA E L
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVY-----SSRGFAFIYYRHVEEAVAAKEAL 73
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
G +N ++ K E R ++ K +L+V + N++ + L
Sbjct: 74 QGANLNGSQI------------------KIEYARPAKPCK----SLWVGGIGPNVSKDDL 111
Query: 339 KDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQ 398
++ FS+FG I F+ + + + + F+ + ++A QA + MNGK +G L V +
Sbjct: 112 EEEFSKFGKIEDFRFLRE-----RKTAFIDYYEMDDALQAKS-MNGKPMGGSFLRVDFLR 165
Query: 399 RKEDRKARLQAHF 411
+ +K + +
Sbjct: 166 SQAPKKEQWAGSY 178
>AT2G43410.1 | Symbols: FPA | RNA binding | chr2:18026397-18030989
REVERSE LENGTH=858
Length = 858
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 33/193 (17%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
N++V +L+ T+ DL +LF +G I TV +S+ F F+ + + A AA E L
Sbjct: 19 NLWVGSLTPETTESDLTELFGRYGDIDRITVY-----SSRGFAFIYYRHVEEAVAAKEAL 73
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
G +N ++ K E R ++ K +L+V + N++ + L
Sbjct: 74 QGANLNGSQI------------------KIEYARPAKPCK----SLWVGGIGPNVSKDDL 111
Query: 339 KDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQ 398
++ FS+FG I F+ + + + + F+ + ++A QA + MNGK +G L V +
Sbjct: 112 EEEFSKFGKIEDFRFLRE-----RKTAFIDYYEMDDALQAKS-MNGKPMGGSFLRVDFLR 165
Query: 399 RKEDRKARLQAHF 411
+ +K + +
Sbjct: 166 SQAPKKEQWAGSY 178
>AT3G19350.1 | Symbols: MPC | maternally expressed pab C-terminal |
chr3:6705526-6705929 FORWARD LENGTH=103
Length = 103
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 577 PENQRLMLGEHLYPLVEHLTPNQHTAKVTGMLLEMDQSEVIHLIESPEDLKMKVSEALRV 636
P+ QR ++GE L+ +VE L P Q K+TGM+LE+DQ +V+HL+ +P+ K V EA+ V
Sbjct: 28 PKEQRDLIGETLFFMVEELEP-QFAPKITGMILELDQDKVLHLLVTPKAFKEMVKEAMEV 86
Query: 637 L 637
L
Sbjct: 87 L 87
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
+FI L N + F +G + + D +GQ +G+GF+ F + I
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 186 KLNGMLINDKKVYVGLFVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVIT 245
+ +IN K+V + + G + K ++V + + T+++LK FA +G +
Sbjct: 79 DTH--VINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVV 136
Query: 246 SATVMKDVNGN-SKCFGFVNFESPDSAAAAVEKLNGTTINDDKV 288
V++D N S+ FGFV F+S + + K N + D +V
Sbjct: 137 EHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQV 180
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 78/169 (46%), Gaps = 23/169 (13%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVN-GNSKCFGFVNFESPDSAAAAVEK- 277
+++ L + T+ + F +G IT + +M+D + G + FGF+ F P +E
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 278 --LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNIND 335
+NG + + + G +++ ++ ++V + + +
Sbjct: 81 HVINGKQVEIKRTIPKGAGGNQSK------------------DIKTKKIFVGGIPSTVTE 122
Query: 336 EKLKDLFSEFGTITSFKVMLDSYGN-SKGSGFVAFSTPEEANQAMTEMN 383
++LKD F+++G + +V+ D N S+G GFV F + E ++ +++ N
Sbjct: 123 DELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
+++G L + F + +I + RD+ G+ ++ FA+ +E
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE-- 78
Query: 101 NFTPVNGKPIRIMFS---------QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFG 151
+ +NGK + I + +D +K +F+ + +++ L D FA +G
Sbjct: 79 DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKK-----IFVGGIPSTVTEDELKDFFAKYG 133
Query: 152 PVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKV 197
V+ +V D + +S+G+GFV FD++E ++K N + + D +V
Sbjct: 134 NVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQV 180
>AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr3:22900311-22902159 REVERSE LENGTH=264
Length = 264
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 22/165 (13%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLN 188
VF+ N + L F +G VD GY FV F+++ A++AI KL+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYG-------RVDRVDMKSGYAFVYFEDERDAEDAIRKLD 56
Query: 189 GMLINDKKVYVGLFVRHQERGRANGSPK-------FTNVYVKNLSESCTDE-DLKQLFAP 240
+K + + ERGR G K ++V N T E D+++ F P
Sbjct: 57 NFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEP 116
Query: 241 FGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGTTIND 285
+G +T+ + ++ F FV FE+ + A A+E + I D
Sbjct: 117 YGKVTNVRIRRN-------FSFVQFETQEDATKALEATQRSKILD 154
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 25/184 (13%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKL 187
+F+ + +AL F+ +G VL VA + +G+ +G+GFV+F ND A+
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 188 NGML---------INDKKVYVGLF-VRHQERG-----------RANG-SPKFTNVYVKNL 225
+ +L I ++Y F ++ ER +NG + + ++V L
Sbjct: 68 HFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGL 127
Query: 226 SESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTIN 284
S + T+E+ K F FG T VM D V + FGFV ++S DS ++ N ++
Sbjct: 128 SSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS-NFHELS 186
Query: 285 DDKV 288
D +V
Sbjct: 187 DKRV 190
>AT5G03580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:906956-907422 REVERSE LENGTH=101
Length = 101
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 323 NLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEM 382
+LY+ NLD +++E L +FS+FG + + D G S+G F+ F + + A +AM M
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77
Query: 383 NGKLVGRKPLYVAVAQRKED 402
+G+L+G+K L V + ED
Sbjct: 78 DGRLIGQKILCVQRTPKVED 97
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 209 GRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESP 268
G ++ KFT++Y+ NL ++E L +F+ FG + + + KD G S+ F F+ FES
Sbjct: 8 GSSSCPRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESA 67
Query: 269 DSAAAAVEKLNGTTINDDKVLYAGRAQR 296
DSA A+ ++G I K+L R +
Sbjct: 68 DSAGRAMLHMDGRLIG-QKILCVQRTPK 94
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 43/70 (61%)
Query: 126 YANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAIN 185
+ +++I NLD + + L F+ FG V+ +A D G+S+G+ F++F++ ++A A+
Sbjct: 16 FTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAML 75
Query: 186 KLNGMLINDK 195
++G LI K
Sbjct: 76 HMDGRLIGQK 85
>AT1G29400.2 | Symbols: AML5, ML5 | MEI2-like protein 5 |
chr1:10290393-10293696 REVERSE LENGTH=800
Length = 800
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSI-RVCRDQTKRSSLGYAYVNFANAQD 92
G + +L+V ++ NV +++L LF Q I ++ C+ + G+ +++ + +
Sbjct: 163 GEHPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHR------GFVMISYYDIRS 216
Query: 93 AANALELLNFTPVNGKPIRIMFS--QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A A+ L P+ + + I FS + +PS + + + NLD SI N LH F A
Sbjct: 217 ARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAH 276
Query: 151 GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
G + + + + + FV+F + A+ A+ LN I K++ V
Sbjct: 277 GEIKEIR----ETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKV 321
>AT1G29400.1 | Symbols: AML5, ML5 | MEI2-like protein 5 |
chr1:10290393-10293696 REVERSE LENGTH=800
Length = 800
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSI-RVCRDQTKRSSLGYAYVNFANAQD 92
G + +L+V ++ NV +++L LF Q I ++ C+ + G+ +++ + +
Sbjct: 163 GEHPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHR------GFVMISYYDIRS 216
Query: 93 AANALELLNFTPVNGKPIRIMFS--QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A A+ L P+ + + I FS + +PS + + + NLD SI N LH F A
Sbjct: 217 ARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAH 276
Query: 151 GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
G + + + + + FV+F + A+ A+ LN I K++ V
Sbjct: 277 GEIKEIR----ETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKV 321
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 123 KSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQ 181
+S +FI + D + L D F+ +G V+ + D A+G+++G+GF+ F + ++
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 182 NAI---NKLNGMLINDKKVY----VGLFVRHQE-----RGRANGSPKFTNVYVKNLSESC 229
I + ++G + KK + RH G + ++V L S
Sbjct: 62 RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSI 121
Query: 230 TDEDLKQLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK----LNGTTI 283
T+E+ K F FG I VM D N + FGF+ F+S D+ + K LNG +
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 123 KSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQ 181
+S +FI + D + L D F+ +G V+ + D A+G+++G+GF+ F + ++
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 182 NAI---NKLNGMLINDKKVY----VGLFVRHQE-----RGRANGSPKFTNVYVKNLSESC 229
I + ++G + KK + RH G + ++V L S
Sbjct: 62 RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSI 121
Query: 230 TDEDLKQLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK----LNGTTI 283
T+E+ K F FG I VM D N + FGF+ F+S D+ + K LNG +
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
>AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 |
chr1:11875174-11877188 REVERSE LENGTH=358
Length = 358
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
++YV DL+ V E QL LF Q+V R+C D S L +A++ F + + A AL L
Sbjct: 174 TVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPN--SVLRFAFIEFTDEEGAMTALNL 231
Query: 100 ----LNFTPVNGKPIRIMFSQRDPSI-------RKSGYANVFIKNLDTSIDNKALHDTFA 148
L F PV P + + +P+ R+ ++ N+D + + F
Sbjct: 232 SGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFE 291
Query: 149 AF-GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAIN 185
+F G V ++ D S FV+F E+A A+N
Sbjct: 292 SFCGEVYRLRLLGDYQ-HSTRIAFVEFVMAESAIAALN 328
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 22/177 (12%)
Query: 111 RIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYG 170
R +QR+ IR++ V++ +LD + + L F + G V+ C++ D + + +
Sbjct: 161 RTSMAQREDVIRRT----VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLR-FA 215
Query: 171 FVQFDNDEAAQNAINKLNGMLINDKKVYV-----------GLFVRHQERGRANGSPKFTN 219
F++F ++E A A+N L+G ++ V V F+ E R +
Sbjct: 216 FIEFTDEEGAMTALN-LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCA---RT 271
Query: 220 VYVKNLSESCTDEDLKQLFAPF-GVITSATVMKDVNGNSKCFGFVNFESPDSAAAAV 275
+Y N+ + T D+K F F G + ++ D +++ FV F +SA AA+
Sbjct: 272 IYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTR-IAFVEFVMAESAIAAL 327
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 14/180 (7%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
VYV +L + T+E L LF G + + D N + F F+ F + A A+ L
Sbjct: 174 TVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLR-FAFIEFTDEEGAMTAL-NL 231
Query: 279 NGTTIN--DDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
+GT + KVL + A R + E+E +R +Y N+D +
Sbjct: 232 SGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCAR-------TIYCTNIDKKVTQS 284
Query: 337 KLKDLFSEF-GTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
+K F F G + +++ D Y +S FV F E A A+ +G ++G P+ V+
Sbjct: 285 DVKIFFESFCGEVYRLRLLGD-YQHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 342
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 123 KSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQ 181
+S +FI + D + L D F+ +G V+ + D A+G+++G+GF+ F + ++
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 182 NAI---NKLNGMLINDKKVY----VGLFVRHQE-----RGRANGSPKFTNVYVKNLSESC 229
I + ++G + KK + RH G + ++V L S
Sbjct: 62 RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSI 121
Query: 230 TDEDLKQLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK----LNGTTI 283
T+E+ K F FG I VM D N + FGF+ F+S D+ + K LNG +
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 18/179 (10%)
Query: 123 KSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQ 181
+S +FI + D + L D F+ +G V+ + D A+G+++G+GF+ F + ++
Sbjct: 2 ESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSE 61
Query: 182 NAI---NKLNGMLINDKKVY----VGLFVRHQE-----RGRANGSPKFTNVYVKNLSESC 229
I + ++G + KK + RH G + ++V L S
Sbjct: 62 RVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSI 121
Query: 230 TDEDLKQLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK----LNGTTI 283
T+E+ K F FG I VM D N + FGF+ F+S D+ + K LNG +
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
>AT5G24440.1 | Symbols: CID13 | CTC-interacting domain 13 |
chr5:8345402-8347776 REVERSE LENGTH=320
Length = 320
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
++YV D++ V E QL LF Q+V R+C D +S L +A++ F +A+ A +AL
Sbjct: 138 TVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDY--KSILRFAFIEFTDAEGARSALR- 194
Query: 100 LNFTPVNGKPIRIMFSQR-----DPS--------IRKSGYANVFIKNLDTSIDNKALHDT 146
+ T PIR+ S+ +PS + K G V+ N+D + L +
Sbjct: 195 KSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDELEKCG-KTVYCTNIDKEVTKMELENF 253
Query: 147 F-AAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVG 200
F G V ++ D Q++ FV+F E+A +A+N +G+++ + + V
Sbjct: 254 FKTVCGEVHHLRLLGDFYHQTR-IAFVEFKLAESAISALN-CSGVVLGELPIRVS 306
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 126 YANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAI 184
+ +F+ L +L D F +G + CK VD SGQSKGYGF+ F + A+NA+
Sbjct: 127 HRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
Query: 185 NKLNGMLINDKKVYVGLF-VRHQERGRANGSPKFT------------NVYVKNLSESCTD 231
+ KK+ + + G G+P +YV N+S
Sbjct: 187 KQPQ------KKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDP 240
Query: 232 EDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLY 290
+ L + F+ FG I + D G K F + S +SA A+E+ + T + VL+
Sbjct: 241 QKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTF--EGHVLH 298
Query: 291 AGRA 294
+A
Sbjct: 299 CHKA 302
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 18/161 (11%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL--- 97
++V L + L D F Q +I + D+ S GY ++ F + A NAL
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 98 -----------ELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDT 146
+L + PV G P+ +P + +++ N+ ID + L +
Sbjct: 190 QKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQR---KIYVSNVSADIDPQKLLEF 246
Query: 147 FAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINK 186
F+ FG + + +D A+G+ KG+ + + E+A+ A+ +
Sbjct: 247 FSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 116/298 (38%), Gaps = 58/298 (19%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAV--- 275
++V L + L F +G I + D V+G SK +GF+ F+S A A+
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 276 EKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNIND 335
+K GT + ++ G Q F E + R +YV N+ +I+
Sbjct: 190 QKKIGTRMTACQLASIGPVQ--GNPVVAPAQHFNPENVQR-------KIYVSNVSADIDP 240
Query: 336 EKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYV 394
+KL + FS FG I + LD + G KG + + E A +A+ E + G +V
Sbjct: 241 QKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEG----HV 296
Query: 395 AVAQRKEDRKARLQAH---------FAQIQ--------VPGGMAPLPAG----IPGY--- 430
+ D +++ H ++ Q PGG AG + +
Sbjct: 297 LHCHKANDGPKQVKQHQHNHNSHNQNSRYQRNDNNGYGAPGGHGHFIAGNNQAVQAFNPA 356
Query: 431 --HAGTPRLAPQ-------QLY-------YGQGSPGFMPPQPAGYGFQQQMLPGMRPG 472
A T LA Q Q + G SPG + P+GYG Q + PG+ PG
Sbjct: 357 IGQALTALLASQGAGLGLNQAFGQALLGTLGTASPGAVGGMPSGYGTQANISPGVYPG 414
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 126 YANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAI 184
+ +F+ L +L D F +G + CK VD SGQSKGYGF+ F + A+NA+
Sbjct: 127 HRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
Query: 185 NKLNGMLINDKKVYVGLF-VRHQERGRANGSPKFT------------NVYVKNLSESCTD 231
+ KK+ + + G G+P +YV N+S
Sbjct: 187 KQPQ------KKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDP 240
Query: 232 EDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLNGTTINDDKVLY 290
+ L + F+ FG I + D G K F + S +SA A+E+ + T + VL+
Sbjct: 241 QKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTF--EGHVLH 298
Query: 291 AGRA 294
+A
Sbjct: 299 CHKA 302
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 18/161 (11%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL--- 97
++V L + L D F Q +I + D+ S GY ++ F + A NAL
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 98 -----------ELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDT 146
+L + PV G P+ +P + +++ N+ ID + L +
Sbjct: 190 QKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQR---KIYVSNVSADIDPQKLLEF 246
Query: 147 FAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINK 186
F+ FG + + +D A+G+ KG+ + + E+A+ A+ +
Sbjct: 247 FSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 116/298 (38%), Gaps = 58/298 (19%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAV--- 275
++V L + L F +G I + D V+G SK +GF+ F+S A A+
Sbjct: 130 IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQP 189
Query: 276 EKLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNIND 335
+K GT + ++ G Q F E + R +YV N+ +I+
Sbjct: 190 QKKIGTRMTACQLASIGPVQ--GNPVVAPAQHFNPENVQR-------KIYVSNVSADIDP 240
Query: 336 EKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYV 394
+KL + FS FG I + LD + G KG + + E A +A+ E + G +V
Sbjct: 241 QKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEG----HV 296
Query: 395 AVAQRKEDRKARLQAH---------FAQIQ--------VPGGMAPLPAG----IPGY--- 430
+ D +++ H ++ Q PGG AG + +
Sbjct: 297 LHCHKANDGPKQVKQHQHNHNSHNQNSRYQRNDNNGYGAPGGHGHFIAGNNQAVQAFNPA 356
Query: 431 --HAGTPRLAPQ-------QLY-------YGQGSPGFMPPQPAGYGFQQQMLPGMRPG 472
A T LA Q Q + G SPG + P+GYG Q + PG+ PG
Sbjct: 357 IGQALTALLASQGAGLGLNQAFGQALLGTLGTASPGAVGGMPSGYGTQANISPGVYPG 414
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 83/166 (50%), Gaps = 19/166 (11%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKL 278
++V L+ T + + F +G IT + +MKD G + FGFV + + ++ V+K+
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY----ADSSVVDKV 99
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKL 338
I D+ ++ ++ E++ + +S + + ++V + +++D++
Sbjct: 100 ----IQDNHIIIG--------KQVEIKRTIPRGSMSSND-FKTKKIFVGGIPSSVDDDEF 146
Query: 339 KDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEMN 383
K+ F +FG + ++M D S G S+G GFV + + + + + + N
Sbjct: 147 KEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGN 192
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 14/159 (8%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
+F+ L + F +G + + D +GQ +G+GFV + A + ++
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTY----ADSSVVD 97
Query: 186 KLNGMLINDKKVYVGLFV---RHQERGRANGSP-KFTNVYVKNLSESCTDEDLKQLFAPF 241
K+ I D + +G V R RG + + K ++V + S D++ K+ F F
Sbjct: 98 KV----IQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQF 153
Query: 242 GVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEKLN 279
G + +M+D G S+ FGFV +ES D + K N
Sbjct: 154 GELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGN 192
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/171 (19%), Positives = 83/171 (48%), Gaps = 5/171 (2%)
Query: 32 GGGPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQ 91
GGG + ++VG L A+ F + +I + +D+ G+ +V +A++
Sbjct: 35 GGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSS 94
Query: 92 DAANALELLNFTPVNGKPIRIMFSQRDPSIRKSGYAN--VFIKNLDTSIDNKALHDTFAA 149
++ + + GK + I + S+ + + +F+ + +S+D+ + F
Sbjct: 95 VVDKVIQDNHI--IIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQ 152
Query: 150 FGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
FG + ++ D ++G+S+G+GFV +++++ + + K N + ++ +V +
Sbjct: 153 FGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEI 203
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAI--- 184
+FI + D + L + F +G ++ + D +G+++G+GF+ F + A+ I
Sbjct: 14 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 73
Query: 185 NKLNGMLINDKKVY----VGLFVRHQE--------RGRANGSPKFTNVYVKNLSESCTDE 232
+ ++G + KK + RH G G + ++V L S T+
Sbjct: 74 HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEA 133
Query: 233 DLKQLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK----LNGTTI 283
+ K F FG I VM D N + FGF+ F+S +S + K LNG +
Sbjct: 134 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 189
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 79/181 (43%), Gaps = 24/181 (13%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL--- 97
L++G + + +E +L + F + +V + RD+T + G+ ++ FA+ A +
Sbjct: 14 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 73
Query: 98 ELLNFTPVNGK----------------PIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNK 141
+++ V K P+ ++ + + +F+ L +SI
Sbjct: 74 HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEA 133
Query: 142 ALHDTFAAFGPVLSCKVAVDASGQS-KGYGFVQFDNDEAAQNAINK----LNGMLINDKK 196
+ F FG + V D + Q +G+GF+ FD++E+ ++K LNG ++ K+
Sbjct: 134 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKR 193
Query: 197 V 197
Sbjct: 194 A 194
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAI--- 184
+FI + D + L + F +G ++ + D +G+++G+GF+ F + A+ I
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 185 NKLNGMLINDKKVY----VGLFVRHQE--------RGRANGSPKFTNVYVKNLSESCTDE 232
+ ++G + KK + RH G G + ++V L S T+
Sbjct: 77 HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEA 136
Query: 233 DLKQLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK----LNGTTI 283
+ K F FG I VM D N + FGF+ F+S +S + K LNG +
Sbjct: 137 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 192
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 79/181 (43%), Gaps = 24/181 (13%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANAL--- 97
L++G + + +E +L + F + +V + RD+T + G+ ++ FA+ A +
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 98 ELLNFTPVNGK----------------PIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNK 141
+++ V K P+ ++ + + +F+ L +SI
Sbjct: 77 HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEA 136
Query: 142 ALHDTFAAFGPVLSCKVAVDASGQS-KGYGFVQFDNDEAAQNAINK----LNGMLINDKK 196
+ F FG + V D + Q +G+GF+ FD++E+ ++K LNG ++ K+
Sbjct: 137 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVKR 196
Query: 197 V 197
Sbjct: 197 A 197
>AT1G32790.2 | Symbols: CID11 | CTC-interacting domain 11 |
chr1:11875028-11877188 REVERSE LENGTH=406
Length = 406
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 15/158 (9%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
++YV DL+ V E QL LF Q+V R+C D S L +A++ F + + A AL L
Sbjct: 174 TVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPN--SVLRFAFIEFTDEEGAMTALNL 231
Query: 100 ----LNFTPVNGKPIRIMFSQRDPSI-------RKSGYANVFIKNLDTSIDNKALHDTFA 148
L F PV P + + +P+ R+ ++ N+D + + F
Sbjct: 232 SGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFE 291
Query: 149 AF-GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAIN 185
+F G V ++ D ++ FV+F E+A A+N
Sbjct: 292 SFCGEVYRLRLLGDYQHSTR-IAFVEFVMAESAIAALN 328
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 24/178 (13%)
Query: 111 RIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYG 170
R +QR+ IR++ V++ +LD + + L F + G V+ C++ D + + +
Sbjct: 161 RTSMAQREDVIRRT----VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLR-FA 215
Query: 171 FVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQERGRANGSPKFT------------ 218
F++F ++E A A+N L+G ++ + + V + A +P F
Sbjct: 216 FIEFTDEEGAMTALN-LSGTMLG----FYPVKVLPSKTAIAPVNPTFLPRTEDEREMCAR 270
Query: 219 NVYVKNLSESCTDEDLKQLFAPF-GVITSATVMKDVNGNSKCFGFVNFESPDSAAAAV 275
+Y N+ + T D+K F F G + ++ D +++ FV F +SA AA+
Sbjct: 271 TIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTR-IAFVEFVMAESAIAAL 327
>AT3G04500.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:1212065-1213795 REVERSE LENGTH=245
Length = 245
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDS-YGNSKGSGFVAFSTPEEANQAMTEM 382
L+ +L + +ND+ L F+ F T KV+ D G +KG GFV+F P + A+ EM
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 383 NGKLVGRKPLYVAVAQRKE 401
NGK VG +P+ + + KE
Sbjct: 199 NGKYVGNRPIKLRKSSWKE 217
>AT5G41690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16670126-16674189 REVERSE LENGTH=567
Length = 567
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 17/194 (8%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLN 279
++V NL ++ F G + ++ ++ G GFV F S + A A++K N
Sbjct: 70 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 129
Query: 280 GTTINDDKVLYAGRAQRKAE------------REAELRAKFEQERISRYEKLQGAN---L 324
G ++++K+ + A +KA + + R + E I E+ + L
Sbjct: 130 GECLDNNKI-FLDVANKKATYLPPKYCIDHKVWDKDYR-RLESHPIEEDERPPNSVEEVL 187
Query: 325 YVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNG 384
+V NL + D F+ G + S ++M++ G G GFV F++ +E +A+ NG
Sbjct: 188 FVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKNG 247
Query: 385 KLVGRKPLYVAVAQ 398
+ + +++ VA+
Sbjct: 248 EYLHDHKIFIDVAK 261
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKL 187
+FI L D+ +L D FA FG V+ KV VD +G+S+G+GFV F+++ AA AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 188 NGMLINDKKVYV 199
+G +N + + V
Sbjct: 97 DGKELNGRHIRV 108
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 84/172 (48%), Gaps = 26/172 (15%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
+L+ +L N+ A + + F + ++V +R ++ S G+ +V FA++++A ALE
Sbjct: 298 TLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE- 356
Query: 100 LNFTPVNGKPIRI-------------MFSQRDPSIRKSG----YANVFIKNLDTSIDNKA 142
+ P+ G+ IR+ F+ + + R G +F+K D S+
Sbjct: 357 FHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDD 416
Query: 143 LHDT----FAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKLNG 189
+ +T F++ G + + V +D +G SKG +++F E + A+ +LNG
Sbjct: 417 IKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF--SEGKEKAL-ELNG 465
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVE 276
+ ++V LS D LKQ F FG +T ATV+ D G S+ FGFV+F DSA A++
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKF 308
+++G +N ++ R ER + R+ F
Sbjct: 95 EMDGKELNGRQI----RVNLATERSSAPRSSF 122
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
+ +F+ L D+ +L F +FG V V D +G+S+G+GFV F +++A NAI
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 186 KLNGMLINDKKVYVGLFVRHQERGRAN 212
+++G +N +++ V L R++
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAPRSS 121
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 318 KLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEAN 376
+ + L+V L +D LK F+ FG +T V+ D G S+G GFV+FS + AN
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 377 QAMTEMNGKLVGRKPLYVAVAQRK 400
A+ EM+GK + + + V +A +
Sbjct: 91 NAIKEMDGKELNGRQIRVNLATER 114
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVE 276
+ ++V LS D LKQ F FG +T ATV+ D G S+ FGFV+F DSA A++
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKF 308
+++G +N ++ R ER + R+ F
Sbjct: 95 EMDGKELNGRQI----RVNLATERSSAPRSSF 122
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 127 ANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAIN 185
+ +F+ L D+ +L F +FG V V D +G+S+G+GFV F +++A NAI
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 186 KLNGMLINDKKVYVGLFVRHQERGRAN 212
+++G +N +++ V L R++
Sbjct: 95 EMDGKELNGRQIRVNLATERSSAPRSS 121
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 318 KLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEAN 376
+ + L+V L +D LK F+ FG +T V+ D G S+G GFV+FS + AN
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 377 QAMTEMNGKLVGRKPLYVAVAQRK 400
A+ EM+GK + + + V +A +
Sbjct: 91 NAIKEMDGKELNGRQIRVNLATER 114
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 22/181 (12%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKL 187
+FI + D L + F+ FG VL V + A+G+ +G+GFV F + +
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 188 NGMLINDKKVYVGLFVRHQERGRANGSPKFT--------------NVYVKNLSESCTDED 233
+ I+++ V V + +E+ A S F ++V L + T ++
Sbjct: 68 H--HIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 234 LKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEK----LNGTTINDDKV 288
+ F +G ++ A +M D + FGFV+F+S DS + K LNG + +
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA 185
Query: 289 L 289
L
Sbjct: 186 L 186
>AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CTC-interacting
domain 12 | chr4:6557336-6559143 FORWARD LENGTH=336
Length = 336
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
++YV D++ V E QL LF Q+V R+C D S L +A++ F + A AL L
Sbjct: 151 TVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPN--SVLRFAFIEFTDEVGARTALNL 208
Query: 100 ----LNFTPVNGKPIRIMFSQRDPSI-------RKSGYANVFIKNLDTSIDNKALHDTF- 147
L F PV P + + +P+ R+ ++ N+D + + F
Sbjct: 209 SGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFE 268
Query: 148 AAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
+ G V ++ D ++ GFV+F E+A A+N +G+L+ + V
Sbjct: 269 SVCGEVYRLRLLGDYHHPTR-IGFVEFVMAESAIAALN-CSGVLLGSLPIRV 318
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKL 187
+FI L D+ +L D FA FG V+ KV VD +G+S+G+GFV F+++ AA AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 188 NGMLINDKKVYV 199
+G +N + + V
Sbjct: 97 DGKELNGRHIRV 108
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKL 187
+FI L D+ +L D FA FG V+ KV VD +G+S+G+GFV F+++ AA AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 188 NGMLINDKKVYV 199
+G +N + + V
Sbjct: 97 DGKELNGRHIRV 108
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKL 187
+FI L D+ +L D FA FG V+ KV VD +G+S+G+GFV F+++ AA AI+++
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 188 NGMLINDKKVYV 199
+G +N + + V
Sbjct: 97 DGKELNGRHIRV 108
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 322 ANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNS-KGSGFVAFSTPEEANQAMT 380
A L+V L D+ L+ LFS FG I +++ DS KG GF+ F + ++A +A+
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66
Query: 381 EMNGKLVGRKPLYVAVAQRKEDRKARLQAHFAQ 413
++GK+V + ++V VA+ E+ +A + ++ A+
Sbjct: 67 SLDGKIVDGRLIFVEVAKNAEEVRAGINSNKAE 99
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEKL 278
++V LS TD+ L+QLF+PFG I A +++D K FGF+ F+S D A A++ L
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 279 NGTTIN 284
+G ++
Sbjct: 69 DGKIVD 74
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 313 ISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFST 371
+ R L L+V L +EKL+D F+ FG + +V+ D G SKG GFV ++T
Sbjct: 25 VRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYAT 84
Query: 372 PEEANQAMTEMNGKLV 387
E+A +A EMN K +
Sbjct: 85 IEDAEKAKAEMNAKFL 100
>AT3G11400.1 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=294
Length = 294
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEK 277
+V V NLSE + DL +LF PFG +T V D G S+ FGFVNF S + A A+ K
Sbjct: 214 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
Query: 278 LNG 280
LNG
Sbjct: 274 LNG 276
>AT4G10610.2 | Symbols: RBP37, ATRBP37 | CTC-interacting domain 12 |
chr4:6557336-6559019 FORWARD LENGTH=326
Length = 326
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
++YV D++ V E QL LF Q+V R+C D S L +A++ F + A AL L
Sbjct: 151 TVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPN--SVLRFAFIEFTDEVGARTALNL 208
Query: 100 ----LNFTPVNGKPIRIMFSQRDPSI-------RKSGYANVFIKNLDTSIDNKALHDTF- 147
L F PV P + + +P+ R+ ++ N+D + + F
Sbjct: 209 SGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKLTQTDIKLFFE 268
Query: 148 AAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLI 192
+ G V ++ D ++ GFV+F E+A A+N +G+L+
Sbjct: 269 SVCGEVYRLRLLGDYHHPTR-IGFVEFVMAESAIAALN-CSGVLL 311
>AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578536-3580366 FORWARD
LENGTH=321
Length = 321
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVEK 277
+V V NLSE + DL +LF PFG +T V D G S+ FGFVNF S + A A+ K
Sbjct: 241 SVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 300
Query: 278 LNG 280
LNG
Sbjct: 301 LNG 303
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
+F+ + D L + F +G V V D +G+ +G+GFV F + + +
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 188 NGMLINDKKVYVGLFVRHQER-----------GRANGSP---KFTNVYVKNLSESCTDED 233
+ I+ ++V V + +E+ R++G K ++V L + TDE+
Sbjct: 68 HS--IDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125
Query: 234 LKQLFAPFGVITSATVMKDVNGNS-KCFGFVNFESPDSAAAAVEK 277
+Q F +G +T +M D N + FGFV+F+S D+ + + K
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
>AT5G19030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357503-6359081 REVERSE LENGTH=172
Length = 172
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 325 YVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYG-NSKGSGFVAFSTPEEANQAMTEMN 383
+VK D++++ +LK +FSEFG +T+ K++ + S G G+V F++ E+A A+ MN
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 384 GKLVGRKPLYVAVAQRKEDRKARLQAHF 411
GK + + V Q R+ R + F
Sbjct: 140 GKFFDGRFILVKFGQPGLSRRRRPHSDF 167
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 52/92 (56%)
Query: 42 YVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELLN 101
+V +V+E +L +FS+ Q+ ++++ ++ R SLGY YV F + +DA +A+E +N
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query: 102 FTPVNGKPIRIMFSQRDPSIRKSGYANVFIKN 133
+G+ I + F Q S R+ +++ N
Sbjct: 140 GKFFDGRFILVKFGQPGLSRRRRPHSDFLFVN 171
>AT1G53650.2 | Symbols: CID8 | CTC-interacting domain 8 |
chr1:20029262-20031243 REVERSE LENGTH=308
Length = 308
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
++YV D++ +V E L LFS Q+V R+C D S L +A+V F++ Q A +AL L
Sbjct: 123 TVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPN--SVLRFAFVEFSDDQGARSALSL 180
Query: 100 ----LNFTPVNGKPIRI-------MFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTF- 147
+ + PV P + F R R+ ++ N+D + ++ F
Sbjct: 181 GGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQ 240
Query: 148 AAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
+A G V ++ D S FV+F E+A A+N +G+++ + + V
Sbjct: 241 SACGEVTRLRLLGDQV-HSTRIAFVEFAMAESAVAALN-CSGIVLGSQPIRV 290
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKLN 279
VYV ++ +S T+E L LF+ G + + D N + F FV F S D A + L
Sbjct: 124 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLR-FAFVEF-SDDQGARSALSLG 181
Query: 280 GTTIN--DDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
GT I +VL + A R++ E+E SR +Y N+D N ++
Sbjct: 182 GTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR-------TIYCTNVDKNATEDD 234
Query: 338 LKDLF-SEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
+ F S G +T +++ D +++ FV F+ E A A+ +G ++G +P+ V+
Sbjct: 235 VNTFFQSACGEVTRLRLLGDQVHSTR-IAFVEFAMAESAVAALN-CSGIVLGSQPIRVS 291
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 118 DPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDN 176
DP R FI L + ++ L D F +G ++ KV +D SG+S+G+GF+ FD
Sbjct: 4 DPEYR------CFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDE 57
Query: 177 DEAAQNAINKLNGMLINDKKVYVGLFVRHQ 206
+A AI +NGM ++ + + V HQ
Sbjct: 58 KKAMDEAIAAMNGMDLDGRTITVDKAQPHQ 87
>AT1G53650.1 | Symbols: CID8 | CTC-interacting domain 8 |
chr1:20029262-20031243 REVERSE LENGTH=314
Length = 314
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 83/172 (48%), Gaps = 16/172 (9%)
Query: 40 SLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALEL 99
++YV D++ +V E L LFS Q+V R+C D S L +A+V F++ Q A +AL L
Sbjct: 129 TVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPN--SVLRFAFVEFSDDQGARSALSL 186
Query: 100 ----LNFTPVNGKPIRIMFSQRDPSI-------RKSGYANVFIKNLDTSIDNKALHDTF- 147
+ + PV P + +P+ R+ ++ N+D + ++ F
Sbjct: 187 GGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNATEDDVNTFFQ 246
Query: 148 AAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYV 199
+A G V ++ D ++ FV+F E+A A+N +G+++ + + V
Sbjct: 247 SACGEVTRLRLLGDQVHSTR-IAFVEFAMAESAVAALN-CSGIVLGSQPIRV 296
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEKL 278
VYV ++ +S T+E L LF+ G + + D N + F FV F S D A + L
Sbjct: 129 TVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLR-FAFVEF-SDDQGARSALSL 186
Query: 279 NGTTIN--DDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
GT I +VL + A R++ E+E SR +Y N+D N ++
Sbjct: 187 GGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR-------TIYCTNVDKNATED 239
Query: 337 KLKDLF-SEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
+ F S G +T +++ D +++ FV F+ E A A+ +G ++G +P+ V+
Sbjct: 240 DVNTFFQSACGEVTRLRLLGDQVHSTR-IAFVEFAMAESAVAALN-CSGIVLGSQPIRVS 297
>AT5G61960.2 | Symbols: AML1, ML1 | MEI2-like protein 1 |
chr5:24879001-24883483 REVERSE LENGTH=915
Length = 915
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRV-CRDQTKRSSLGYAYVNFANAQD 92
G + +L VG++ NV + +L LF Q I ++ C++ R + +Y + AQ+
Sbjct: 212 GEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKN---RGFIMVSYCDIRAAQN 268
Query: 93 AANALE--LLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
AA AL+ LL T ++ IR S+ +PS + + + + NLD+SI N+ L+ ++
Sbjct: 269 AARALQNKLLRGTKLD---IRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSY 325
Query: 151 GPVLSCKVAVDASGQ 165
G V + + + Q
Sbjct: 326 GEVKEIRRTMHDNSQ 340
>AT5G61960.1 | Symbols: AML1, ML1 | MEI2-like protein 1 |
chr5:24879001-24883483 REVERSE LENGTH=915
Length = 915
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRV-CRDQTKRSSLGYAYVNFANAQD 92
G + +L VG++ NV + +L LF Q I ++ C++ R + +Y + AQ+
Sbjct: 212 GEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKN---RGFIMVSYCDIRAAQN 268
Query: 93 AANALE--LLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
AA AL+ LL T ++ IR S+ +PS + + + + NLD+SI N+ L+ ++
Sbjct: 269 AARALQNKLLRGTKLD---IRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSY 325
Query: 151 GPVLSCKVAVDASGQ 165
G V + + + Q
Sbjct: 326 GEVKEIRRTMHDNSQ 340
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVE 276
T VYV NLS + TD+ L++ F+ +G + A VM+D S+ FGFV + S A AAV
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 277 KLNGTTINDDKV 288
++G +N +V
Sbjct: 63 GMDGKELNGRRV 74
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGN-SKGSGFVAFSTPEEANQAMTEM 382
+YV NL D+ L++ FS +G + VM D Y + S+G GFV +S+ EA A++ M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 383 NGK-LVGRK 390
+GK L GR+
Sbjct: 65 DGKELNGRR 73
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVE 276
T +Y+ LS + LK F+ F +T A VM + V G S+ +GFVNF S DSA +A+
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 277 KLNGTTIN 284
+NG +N
Sbjct: 91 AMNGQELN 98
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 318 KLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSY-GNSKGSGFVAFSTPEEAN 376
+ LY+ L ++ LKD FS F +T +VM + G S+G GFV F + + AN
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86
Query: 377 QAMTEMNGKLVGRKPLYVAVAQ 398
A++ MNG+ + + V VA+
Sbjct: 87 SAISAMNGQELNGFNISVNVAK 108
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKL 187
++I L D +L D F++F V +V + +G+S+GYGFV F ++++A +AI+ +
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 188 NGMLINDKKVYVGL 201
NG +N + V +
Sbjct: 93 NGQELNGFNISVNV 106
>AT5G44200.2 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |
chr5:17802062-17803875 REVERSE LENGTH=257
Length = 257
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 37 ANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANA 96
A+ ++Y+G++ E QLY+LFS+ +I I + D+ ++ G+ +V F + +D +A
Sbjct: 32 ASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDA 91
Query: 97 LELLNFTPVNGKPIRIMF 114
++ ++ T ++ +PIR+ F
Sbjct: 92 VKYISGTILDDRPIRVDF 109
>AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |
chr5:17802062-17803875 REVERSE LENGTH=257
Length = 257
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 37 ANASLYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANA 96
A+ ++Y+G++ E QLY+LFS+ +I I + D+ ++ G+ +V F + +D +A
Sbjct: 32 ASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDA 91
Query: 97 LELLNFTPVNGKPIRIMF 114
++ ++ T ++ +PIR+ F
Sbjct: 92 VKYISGTILDDRPIRVDF 109
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 120 SIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDE 178
+IR + +FI + S+D +L + F +G V+ +V +D +G+S+G+GFV F + E
Sbjct: 33 AIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSE 92
Query: 179 AAQNAINKLNGMLINDKKVYV 199
AA +AI L+G ++ + V V
Sbjct: 93 AASSAIQALDGRDLHGRVVKV 113
>AT1G53720.1 | Symbols: ATCYP59, CYP59 | cyclophilin 59 |
chr1:20057012-20059508 FORWARD LENGTH=506
Length = 506
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 220 VYVKNLSESCTDEDLKQLFAPFGVITSATVMKDV-NGNSKCFGFVNFESPDSAAAAVEKL 278
++V L+ DEDL +F+ FG + SA V++D G+S C+ F+ FE+ +S A K+
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 279 NGTTINDDKVLYAGRAQRKAEREAELRAKFEQE 311
+ I DD+ ++ +Q ++ ++ R K Q+
Sbjct: 305 DNALI-DDRRIHVDFSQSVSKLWSQFRQKDSQK 336
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKL 187
+F+ L+ +++ LH F+ FG V+S V D +G S Y F++F+N E+ + A K+
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 188 NGMLINDKKVYV 199
+ LI+D++++V
Sbjct: 305 DNALIDDRRIHV 316
>AT5G06000.1 | Symbols: EIF3G2, ATEIF3G2 | eukaryotic translation
initiation factor 3G2 | chr5:1808169-1809742 FORWARD
LENGTH=308
Length = 308
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query: 115 SQRDPSIRKSGYAN---------VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASG 164
S R+ + RK+G ++ V + NL L + F FG V C VA+D +
Sbjct: 185 SMREGADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTS 244
Query: 165 QSKGYGFVQFDNDEAAQNAINKLNG 189
S+G+GFV F + E AQ AINKLNG
Sbjct: 245 MSRGFGFVSFVSREDAQRAINKLNG 269
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 219 NVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGN-SKCFGFVNFESPDSAAAAVEK 277
+V V NLSE DL +LF PFG +T V D + S+ FGFV+F S + A A+ K
Sbjct: 207 SVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINK 266
Query: 278 LNG 280
LNG
Sbjct: 267 LNG 269
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L++G L +V+E L D FS ++ +R+ D+ S G+ +V+FA DA +A + +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 101 NFTPVNGKPIRIMFS 115
+ + G+P+RI F+
Sbjct: 103 DGKGLLGRPLRISFA 117
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKL 187
+FI L S+D ++L D F++FG V ++A D SG+S+G+GFV F + A +A + +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 188 NG 189
+G
Sbjct: 103 DG 104
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 319 LQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGN-SKGSGFVAFSTPEEANQ 377
++ L++ L +++ L+ F FG + K+++D SKG F+ ++T E A
Sbjct: 279 VKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGT 338
Query: 378 AMTEMNGKLVGRKPLYVAVAQRKEDRKARLQAHF 411
A+ EMNGK++ + V VA+ K R+ R Q F
Sbjct: 339 ALKEMNGKIINGWMIVVDVAKTKPFRQNRSQPSF 372
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 20/173 (11%)
Query: 48 GNVNEAQLYDLFSQL----------AQIVSIRV--------CRDQTKRSSLGYAYVNFAN 89
G V +AQ+ D QL AQ+ V C D +RS++ A V
Sbjct: 186 GIVTKAQMVDHCVQLLSKVLWNEKDAQMCLYHVSWQSDFGFCCDLDERSAVELAGVPGVL 245
Query: 90 AQDAANALELLNFTPVNGKPIRIMFSQRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAA 149
A N+ E LN G + Q D +FI L K L F
Sbjct: 246 AVVPDNSFESLN-KDYEGDSTQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEG 304
Query: 150 FGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGL 201
FG ++ K+ +D S +SKGY F+++ +EAA A+ ++NG +IN + V +
Sbjct: 305 FGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDV 357
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
+++ NL +D+ AL + F G V+ +V D SG+SKG+GFV + + Q AIN L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 188 NGMLINDKKVYV 199
NG ++ +++ V
Sbjct: 319 NGADLDGRQIRV 330
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEM 382
LYV NL ++D L++LF+E G + +V+ D G SKG GFV S+ +E +A+ +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 383 NGKLVGRKPLYVAVAQRKEDR 403
NG + + + V+ A+ + R
Sbjct: 319 NGADLDGRQIRVSEAEARPPR 339
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
LYVG+L V++ L +LF++ ++V RV D+ S G+ +V +++Q+ A+ L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 101 NFTPVNGKPIRIMFSQRDP 119
N ++G+ IR+ ++ P
Sbjct: 319 NGADLDGRQIRVSEAEARP 337
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
+++ NL +D+ AL + F G V+ +V D SG+SKG+GFV + + Q AIN L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 188 NGMLINDKKVYV 199
NG ++ +++ V
Sbjct: 319 NGADLDGRQIRV 330
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEM 382
LYV NL ++D L++LF+E G + +V+ D G SKG GFV S+ +E +A+ +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 383 NGKLVGRKPLYVAVAQRKEDR 403
NG + + + V+ A+ + R
Sbjct: 319 NGADLDGRQIRVSEAEARPPR 339
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
LYVG+L V++ L +LF++ ++V RV D+ S G+ +V +++Q+ A+ L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 101 NFTPVNGKPIRIMFSQRDP 119
N ++G+ IR+ ++ P
Sbjct: 319 NGADLDGRQIRVSEAEARP 337
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
+++ NL +D+ AL + F G V+ +V D SG+SKG+GFV + + Q AIN L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 188 NGMLINDKKVYV 199
NG ++ +++ V
Sbjct: 319 NGADLDGRQIRV 330
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEM 382
LYV NL ++D L++LF+E G + +V+ D G SKG GFV S+ +E +A+ +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 383 NGKLVGRKPLYVAVAQRKEDR 403
NG + + + V+ A+ + R
Sbjct: 319 NGADLDGRQIRVSEAEARPPR 339
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
LYVG+L V++ L +LF++ ++V RV D+ S G+ +V +++Q+ A+ L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 101 NFTPVNGKPIRIMFSQRDP 119
N ++G+ IR+ ++ P
Sbjct: 319 NGADLDGRQIRVSEAEARP 337
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 129 VFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDA-SGQSKGYGFVQFDNDEAAQNAINKL 187
+++ NL +D+ AL + F G V+ +V D SG+SKG+GFV + + Q AIN L
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 188 NGMLINDKKVYV 199
NG ++ +++ V
Sbjct: 340 NGADLDGRQIRV 351
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQAMTEM 382
LYV NL ++D L++LF+E G + +V+ D G SKG GFV S+ +E +A+ +
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 383 NGKLVGRKPLYVAVAQRKEDR 403
NG + + + V+ A+ + R
Sbjct: 340 NGADLDGRQIRVSEAEARPPR 360
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
LYVG+L V++ L +LF++ ++V RV D+ S G+ +V +++Q+ A+ L
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 101 NFTPVNGKPIRIMFSQRDP 119
N ++G+ IR+ ++ P
Sbjct: 340 NGADLDGRQIRVSEAEARP 358
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 15/194 (7%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEK 277
T + +N+ + T ED++ LF +G + + ++ F+ SP+ AA A++
Sbjct: 94 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKS 153
Query: 278 LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
L + Y GR + K + + K R + + NL+V NL +
Sbjct: 154 L-------ESCEYEGR-RLKVDYAKTKKKKTYAPRETP-SPVPTFNLFVANLAFEARAKH 204
Query: 338 LKDLF-SEFGTITSFKVML-DSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
LK+ F ++ G + S +V+ ++ S G GFV+F T ++A A+ E GK +P+ +A
Sbjct: 205 LKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLA 264
Query: 396 VAQRKEDRKARLQA 409
K + +LQA
Sbjct: 265 ----KSKQFVKLQA 274
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 129 VFIKNLDTSIDNKALHDTFAAF---GPVLSCKVAVD--ASGQSKGYGFVQFDNDEAAQNA 183
+ +KNL ++ L G +LS K + +S GYGFV+FD+ E A +
Sbjct: 537 LHVKNLSFKTTDEGLKKHLTGVVKQGKILSVKQIIRDWTRRRSSGYGFVEFDSVETATSV 596
Query: 184 INKLNGMLINDKKVYVGLFVRHQERGRANGSPKFT---NVYVKNLSESCTDEDLKQLFAP 240
L G +++ + + + GS K T ++VKN++ T ++L+QLF+P
Sbjct: 597 YRDLPGNVLDGHSLILNFSENKRSETVGEGSDKVTKLAKLHVKNVAFEATKKELRQLFSP 656
Query: 241 FGVI 244
FG I
Sbjct: 657 FGQI 660
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 130 FIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLN 188
F+ L + D++AL FA +G V+ K+ D +G+S+G+GFV F +++A ++AI +N
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 189 GMLINDKKVYV 199
G ++ + + V
Sbjct: 71 GQDLDGRSITV 81
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 130 FIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLN 188
F+ L + D++AL FA +G V+ K+ D +G+S+G+GFV F +++A ++AI +N
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 189 GMLINDKKVYV 199
G ++ + + V
Sbjct: 71 GQDLDGRSITV 81
>AT5G19030.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6357570-6359024 REVERSE LENGTH=126
Length = 126
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 325 YVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYG-NSKGSGFVAFSTPEEANQAMTEMN 383
+VK D++++ +LK +FSEFG +T+ K++ + S G G+V F++ E+A A+ MN
Sbjct: 61 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 120
Query: 384 GKL 386
GK+
Sbjct: 121 GKV 123
>AT5G59860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24113462-24114449 FORWARD LENGTH=157
Length = 157
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 207 ERGRANGSPKFTNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNS-KCFGFVNF 265
+R R G T V LS TD+ L+QLFAPF A ++KD K FGF+ F
Sbjct: 60 KRRRLIGGKTLTCVSNSGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITF 114
Query: 266 ESPDSAAAAVEKLNGTTIN 284
ES D A A++ LNG +N
Sbjct: 115 ESEDDAQKALKALNGKIVN 133
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 130 FIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLN 188
F+ L + +++ L TF+ FG V+ K+ D SG+S+G+GFV F +++A ++AI ++N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 189 GMLINDKKVYVGLFVRHQERGRANG 213
G ++ + + V Q RG G
Sbjct: 69 GKELDGRVITVN---EAQSRGSGGG 90
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVE 276
TN++V LS+ T E L+ FA FG + A V+ D V+G SK FGFV + + + +A +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIA 115
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREA 302
++G + D V++A A+ + + ++
Sbjct: 116 GMDGKFL-DGWVIFAEYARPREQSQS 140
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 298 AEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDS 357
A R + L + E + +R + NL+V L E L+ F++FG + KV+ D
Sbjct: 32 ASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDR 91
Query: 358 Y-GNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKEDRKA 405
G SKG GFV ++T E++ + + M+GK + ++ A+ +E ++
Sbjct: 92 VSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYARPREQSQS 140
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 15/194 (7%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKDVNGNSKCFGFVNFESPDSAAAAVEK 277
T + +N+ + T ED++ LF +G + + ++ F+ SP+ AA A++
Sbjct: 34 TRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKS 93
Query: 278 LNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEK 337
L Y GR + K + + K R + + NL+V NL +
Sbjct: 94 LESCE-------YEGR-RLKVDYAKTKKKKTYAPRET-PSPVPTFNLFVANLAFEARAKH 144
Query: 338 LKDLF-SEFGTITSFKVML-DSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVA 395
LK+ F ++ G + S +V+ ++ S G GFV+F T ++A A+ E GK +P+ +A
Sbjct: 145 LKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLA 204
Query: 396 VAQRKEDRKARLQA 409
K + +LQA
Sbjct: 205 ----KSKQFVKLQA 214
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 11/153 (7%)
Query: 125 GYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAI 184
G +F NL I + + F G V+ +++ G KGYG ++F + E AQ A+
Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL 441
Query: 185 NKLNGMLINDKKVYVGL-----FVRHQERGRANGSPKFTNVYVKNLSESCTDEDLKQ--- 236
+NG L+ + V + L R+ GR + +YV+ S S ++++K+
Sbjct: 442 E-MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELR 500
Query: 237 -LFAPFGVITSATVMKDV-NGNSKCFGFVNFES 267
F+ G +T V D G S+ F +++ S
Sbjct: 501 SHFSKCGEVTRVHVPTDRETGASRGFAYIDLTS 533
>AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 |
chr5:2294248-2298491 FORWARD LENGTH=907
Length = 907
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 81/159 (50%), Gaps = 12/159 (7%)
Query: 41 LYVGDLEGNVNEAQLYDLFSQLAQIVSIRVCRDQTKRSSLGYAYVNFANAQDAANALELL 100
L+V +++ ++ + +L LF Q + ++ T + G+ V++ + + A A L
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDVRAL-----HTAGKNRGFIMVSYYDIRAAQKAARAL 267
Query: 101 NFTPVNGKPIRIMFS--QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKV 158
+ + G+ + I +S + +P S +++ NLD+SI N+ LH F+++G + +
Sbjct: 268 HGRLLRGRKLDIRYSIPKENPK-ENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVRR 326
Query: 159 AVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKV 197
+ + Q +++F + A+ A+ LNG+ + +++
Sbjct: 327 TMHENSQV----YIEFFDVRKAKVALQGLNGLEVAGRQL 361
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 122 RKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAA 180
R+ + +FI L + L + F+ G V+ ++ +D S +SKG+GFV F + + A
Sbjct: 29 RRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEA 88
Query: 181 QNAINKLNGMLINDKKVYVGLFVRHQERGRANGSP 215
Q A+ + NG +N + ++V Q G G P
Sbjct: 89 QKALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYP 123
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 324 LYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNS-KGSGFVAFSTPEEANQAMTEM 382
LYV L ++ L+D F +FG + +++D N KG F+ + T EEA +A+ M
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 383 NGKLVGRKPLYVAVAQRKED-RKARLQAHFAQIQ 415
+GK + + ++V A+ + D +A+ + F + Q
Sbjct: 139 HGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQ 172
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 15/226 (6%)
Query: 166 SKGYGFVQFDNDEAAQNAINKLN-----GMLINDKKVYVGLFVRHQERGRANGSPKFTNV 220
+ G G + D+DE Q+ + + +L + +V + R +E A+ P +
Sbjct: 85 TSGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREV--ADEDPVHRKI 142
Query: 221 YVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAV---E 276
+V L E L + F +G I + D ++G SK +GF+ ++S A A+ +
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQ 202
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
K G+ + ++ G A A + Q S + + +YV N+ ++ +
Sbjct: 203 KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQ---KKIYVSNVGAELDPQ 259
Query: 337 KLKDLFSEFGTITSFKVMLDSY-GNSKGSGFVAFSTPEEANQAMTE 381
KL FS+FG I + LD Y G KG + + E A +A+ E
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 15/226 (6%)
Query: 166 SKGYGFVQFDNDEAAQNAINKLN-----GMLINDKKVYVGLFVRHQERGRANGSPKFTNV 220
+ G G + D+DE Q+ + + +L + +V + R +E A+ P +
Sbjct: 85 TSGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREV--ADEDPVHRKI 142
Query: 221 YVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAV---E 276
+V L E L + F +G I + D ++G SK +GF+ ++S A A+ +
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQ 202
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
K G+ + ++ G A A + Q S + + +YV N+ ++ +
Sbjct: 203 KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQ---KKIYVSNVGAELDPQ 259
Query: 337 KLKDLFSEFGTITSFKVMLDSY-GNSKGSGFVAFSTPEEANQAMTE 381
KL FS+FG I + LD Y G KG + + E A +A+ E
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 15/226 (6%)
Query: 166 SKGYGFVQFDNDEAAQNAINKLN-----GMLINDKKVYVGLFVRHQERGRANGSPKFTNV 220
+ G G + D+DE Q+ + + +L + +V + R +E A+ P +
Sbjct: 85 TSGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREV--ADEDPVHRKI 142
Query: 221 YVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAV---E 276
+V L E L + F +G I + D ++G SK +GF+ ++S A A+ +
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQ 202
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
K G+ + ++ G A A + Q S + + +YV N+ ++ +
Sbjct: 203 KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQ---KKIYVSNVGAELDPQ 259
Query: 337 KLKDLFSEFGTITSFKVMLDSY-GNSKGSGFVAFSTPEEANQAMTE 381
KL FS+FG I + LD Y G KG + + E A +A+ E
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 15/226 (6%)
Query: 166 SKGYGFVQFDNDEAAQNAINKLN-----GMLINDKKVYVGLFVRHQERGRANGSPKFTNV 220
+ G G + D+DE Q+ + + +L + +V + R +E A+ P +
Sbjct: 85 TSGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREV--ADEDPVHRKI 142
Query: 221 YVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAV---E 276
+V L E L + F +G I + D ++G SK +GF+ ++S A A+ +
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQ 202
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
K G+ + ++ G A A + Q S + + +YV N+ ++ +
Sbjct: 203 KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQ---KKIYVSNVGAELDPQ 259
Query: 337 KLKDLFSEFGTITSFKVMLDSY-GNSKGSGFVAFSTPEEANQAMTE 381
KL FS+FG I + LD Y G KG + + E A +A+ E
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 15/226 (6%)
Query: 166 SKGYGFVQFDNDEAAQNAINKLN-----GMLINDKKVYVGLFVRHQERGRANGSPKFTNV 220
+ G G + D+DE Q+ + + +L + +V + R +E A+ P +
Sbjct: 85 TSGSGNQEDDDDEPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIREV--ADEDPVHRKI 142
Query: 221 YVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAV---E 276
+V L E L + F +G I + D ++G SK +GF+ ++S A A+ +
Sbjct: 143 FVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQ 202
Query: 277 KLNGTTINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDE 336
K G+ + ++ G A A + Q S + + +YV N+ ++ +
Sbjct: 203 KKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQ---KKIYVSNVGAELDPQ 259
Query: 337 KLKDLFSEFGTITSFKVMLDSY-GNSKGSGFVAFSTPEEANQAMTE 381
KL FS+FG I + LD Y G KG + + E A +A+ E
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
>AT5G59950.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141410 FORWARD LENGTH=211
Length = 211
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMT 380
G LY+ NLD + +E +K+LF+E G + + V D G SKG+ V +S +A A+
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 381 EMNGKLVGRKPLYVAV 396
+ N + KP+ + +
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 130 FIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLN 188
F+ L + +++ L TF+ FG V+ K+ D SG+S+G+GFV F +++A ++AI ++N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 189 GMLINDKKVYV 199
G ++ + + V
Sbjct: 69 GKELDGRVITV 79
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 130 FIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDEAAQNAINKLN 188
F+ L + +++ L TF+ FG V+ K+ D SG+S+G+GFV F +++A ++AI ++N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 189 GMLINDKKVYV 199
G ++ + + V
Sbjct: 69 GKELDGRVITV 79
>AT5G59950.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=242
Length = 242
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMT 380
G LY+ NLD + +E +K+LF+E G + + V D G SKG+ V +S +A A+
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 144
Query: 381 EMNGKLVGRKPLYVAV 396
+ N + KP+ + +
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>AT5G59950.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=244
Length = 244
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMT 380
G LY+ NLD + +E +K+LF+E G + + V D G SKG+ V +S +A A+
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 381 EMNGKLVGRKPLYVAV 396
+ N + KP+ + +
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>AT5G59950.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=245
Length = 245
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMT 380
G LY+ NLD + +E +K+LF+E G + + V D G SKG+ V +S +A A+
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 381 EMNGKLVGRKPLYVAV 396
+ N + KP+ + +
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>AT5G37720.1 | Symbols: ALY4 | ALWAYS EARLY 4 |
chr5:14981805-14983978 REVERSE LENGTH=288
Length = 288
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMT 380
G L+V NLD + +E +++LFSE G + + + D G G+ V + +A QA+
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALK 151
Query: 381 EMNGKLVGRKPLYVAV 396
+ N L+ +P+ + +
Sbjct: 152 KYNNVLLDGRPMRLEI 167
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 120 SIRKSGYANVFIKNLDTSIDNKALHDTFAAFGPVLSCKVAVD-ASGQSKGYGFVQFDNDE 178
SIR + +F+ + S D L + F+ +G V+ K+ VD +G+S+G+ FV F + E
Sbjct: 27 SIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTE 86
Query: 179 AAQNAINKLNGMLINDKKVYV 199
A NA+ +L+G ++ +++ V
Sbjct: 87 EASNAM-QLDGQDLHGRRIRV 106
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 320 QGANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLD-SYGNSKGSGFVAFSTPEEANQA 378
+G+ ++V L + D L+ FS FG I ++ML+ G S+G GF+ F+ +++
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
Query: 379 MTEMNGKLVGRKPLYVAVAQRK 400
+ EM+G+ G + + V A+ K
Sbjct: 65 IREMHGRDFGDRVISVNRAEPK 86
>AT5G59950.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140629-24141504 FORWARD LENGTH=178
Length = 178
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMT 380
G LY+ NLD + +E +K+LF+E G + + V D G SKG+ V +S +A A+
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80
Query: 381 EMNGKLVGRKPLYVAV 396
+ N + KP+ + +
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>AT5G37720.2 | Symbols: ALY4 | ALWAYS EARLY 4 |
chr5:14981805-14983978 REVERSE LENGTH=280
Length = 280
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMT 380
G L+V NLD + +E +++LFSE G + + + D G G+ V + +A QA+
Sbjct: 92 GTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALK 151
Query: 381 EMNGKLVGRKPLYVAV 396
+ N L+ +P+ + +
Sbjct: 152 KYNNVLLDGRPMRLEI 167
>AT5G02530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:564332-565776 REVERSE LENGTH=290
Length = 290
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAM- 379
G LY+ NLD +++E +K+LFSE G + + + D G SKG+ V FS +A A+
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 380 ----TEMNGKLV 387
+++GKL+
Sbjct: 167 RYNNVQLDGKLM 178
>AT5G02530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:564332-565776 REVERSE LENGTH=292
Length = 292
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAM- 379
G LY+ NLD +++E +K+LFSE G + + + D G SKG+ V FS +A A+
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 380 ----TEMNGKLV 387
+++GKL+
Sbjct: 167 RYNNVQLDGKLM 178
>AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing
factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262
Length = 262
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 218 TNVYVKNLSESCTDEDLKQLFAPFGVITSATVMKD-VNGNSKCFGFVNFESPDSAAAAVE 276
T++ V+NL C EDL++ F FG + + +D G+ + FGF+ F P AA A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 277 KLNG 280
+++G
Sbjct: 97 QMDG 100
>AT1G66260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:24695895-24697883 REVERSE LENGTH=295
Length = 295
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMT 380
G +Y+ NLD + +E +++L++E G + + + D G GS V + +A QAM
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMR 165
Query: 381 EMNGKLVGRKPLYVAV 396
+ N L+ +P+ + +
Sbjct: 166 KYNNVLLDGRPMKLEI 181
>AT1G66260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:24695895-24697883 REVERSE LENGTH=295
Length = 295
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 321 GANLYVKNLDDNINDEKLKDLFSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMT 380
G +Y+ NLD + +E +++L++E G + + + D G GS V + +A QAM
Sbjct: 106 GTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMR 165
Query: 381 EMNGKLVGRKPLYVAV 396
+ N L+ +P+ + +
Sbjct: 166 KYNNVLLDGRPMKLEI 181
>AT2G42890.1 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850077-17854205 FORWARD LENGTH=843
Length = 843
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 132/323 (40%), Gaps = 54/323 (16%)
Query: 170 GFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQER--GRA-----NGSPKFTNVYV 222
G ++ D + +A++ +GM I+D+ R + GR NG ++V
Sbjct: 144 GGMELDVESQDNHAVDA-SGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTLFV 202
Query: 223 KNLSESCTDEDLKQLFAPFGVITSA-TVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGT 281
+N++ S D +L LF PFG I S T K S+ F +++ +A AA+ L T
Sbjct: 203 RNINSSVEDSELSALFEPFGEIRSLYTACK-----SRGFVMISYYDIRAAHAAMRALQNT 257
Query: 282 TINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDL 341
+ RK R ++ +E S + QG L + N+D +++++L L
Sbjct: 258 LL------------RK--RTLDIHFSIPKENPSEKDMNQGT-LVIFNVDTTVSNDELLQL 302
Query: 342 FSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKE 401
F +G I + N + F+ + +A A+ +N +G K + + +++
Sbjct: 303 FGAYGEIREIR----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGG 358
Query: 402 DRKARLQAHFAQI----------QVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGF 451
R+ + + + QV +A P G + G+P +GSP
Sbjct: 359 ARRLSVPSQSQDLERTEVTNFYNQVGSHVANSPPG--NWPIGSPV---------KGSPSH 407
Query: 452 MPPQPAGYGFQQQMLPGMRPGVA 474
+P G G + + PG+A
Sbjct: 408 AFTRPHGLGMVRPVNSDNMPGLA 430
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSI-RVCRDQTKRSSLGYAYVNFANAQD 92
G + +L+V ++ +V +++L LF +I S+ C+ S G+ +++ + +
Sbjct: 193 GEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACK------SRGFVMISYYDIRA 246
Query: 93 AANALELLNFTPVNGKPIRIMFS--QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A A+ L T + + + I FS + +PS + + I N+DT++ N L F A+
Sbjct: 247 AHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAY 306
Query: 151 GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGL 201
G + + + + + F+++ + A+ A+ LN I K + + L
Sbjct: 307 GEIREIR----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
>AT2G42890.3 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 132/323 (40%), Gaps = 54/323 (16%)
Query: 170 GFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQER--GRA-----NGSPKFTNVYV 222
G ++ D + +A++ +GM I+D+ R + GR NG ++V
Sbjct: 131 GGMELDVESQDNHAVDA-SGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTLFV 189
Query: 223 KNLSESCTDEDLKQLFAPFGVITSA-TVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGT 281
+N++ S D +L LF PFG I S T K S+ F +++ +A AA+ L T
Sbjct: 190 RNINSSVEDSELSALFEPFGEIRSLYTACK-----SRGFVMISYYDIRAAHAAMRALQNT 244
Query: 282 TINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDL 341
+ RK R ++ +E S + QG L + N+D +++++L L
Sbjct: 245 LL------------RK--RTLDIHFSIPKENPSEKDMNQGT-LVIFNVDTTVSNDELLQL 289
Query: 342 FSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKE 401
F +G I + N + F+ + +A A+ +N +G K + + +++
Sbjct: 290 FGAYGEIREIR----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGG 345
Query: 402 DRKARLQAHFAQI----------QVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGF 451
R+ + + + QV +A P G + G+P +GSP
Sbjct: 346 ARRLSVPSQSQDLERTEVTNFYNQVGSHVANSPPG--NWPIGSPV---------KGSPSH 394
Query: 452 MPPQPAGYGFQQQMLPGMRPGVA 474
+P G G + + PG+A
Sbjct: 395 AFTRPHGLGMVRPVNSDNMPGLA 417
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSI-RVCRDQTKRSSLGYAYVNFANAQD 92
G + +L+V ++ +V +++L LF +I S+ C+ S G+ +++ + +
Sbjct: 180 GEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACK------SRGFVMISYYDIRA 233
Query: 93 AANALELLNFTPVNGKPIRIMFS--QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A A+ L T + + + I FS + +PS + + I N+DT++ N L F A+
Sbjct: 234 AHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAY 293
Query: 151 GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGL 201
G + + + + + F+++ + A+ A+ LN I K + + L
Sbjct: 294 GEIREIR----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
>AT2G42890.2 | Symbols: AML2, ML2 | MEI2-like 2 |
chr2:17850632-17854205 FORWARD LENGTH=830
Length = 830
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 132/323 (40%), Gaps = 54/323 (16%)
Query: 170 GFVQFDNDEAAQNAINKLNGMLINDKKVYVGLFVRHQER--GRA-----NGSPKFTNVYV 222
G ++ D + +A++ +GM I+D+ R + GR NG ++V
Sbjct: 131 GGMELDVESQDNHAVDA-SGMQISDRGAANAFVPRKRPNTAGRVSVEHPNGEHPSRTLFV 189
Query: 223 KNLSESCTDEDLKQLFAPFGVITSA-TVMKDVNGNSKCFGFVNFESPDSAAAAVEKLNGT 281
+N++ S D +L LF PFG I S T K S+ F +++ +A AA+ L T
Sbjct: 190 RNINSSVEDSELSALFEPFGEIRSLYTACK-----SRGFVMISYYDIRAAHAAMRALQNT 244
Query: 282 TINDDKVLYAGRAQRKAEREAELRAKFEQERISRYEKLQGANLYVKNLDDNINDEKLKDL 341
+ RK R ++ +E S + QG L + N+D +++++L L
Sbjct: 245 LL------------RK--RTLDIHFSIPKENPSEKDMNQGT-LVIFNVDTTVSNDELLQL 289
Query: 342 FSEFGTITSFKVMLDSYGNSKGSGFVAFSTPEEANQAMTEMNGKLVGRKPLYVAVAQRKE 401
F +G I + N + F+ + +A A+ +N +G K + + +++
Sbjct: 290 FGAYGEIREIR----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGG 345
Query: 402 DRKARLQAHFAQI----------QVPGGMAPLPAGIPGYHAGTPRLAPQQLYYGQGSPGF 451
R+ + + + QV +A P G + G+P +GSP
Sbjct: 346 ARRLSVPSQSQDLERTEVTNFYNQVGSHVANSPPG--NWPIGSPV---------KGSPSH 394
Query: 452 MPPQPAGYGFQQQMLPGMRPGVA 474
+P G G + + PG+A
Sbjct: 395 AFTRPHGLGMVRPVNSDNMPGLA 417
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 34 GPFANASLYVGDLEGNVNEAQLYDLFSQLAQIVSI-RVCRDQTKRSSLGYAYVNFANAQD 92
G + +L+V ++ +V +++L LF +I S+ C+ S G+ +++ + +
Sbjct: 180 GEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACK------SRGFVMISYYDIRA 233
Query: 93 AANALELLNFTPVNGKPIRIMFS--QRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAF 150
A A+ L T + + + I FS + +PS + + I N+DT++ N L F A+
Sbjct: 234 AHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAY 293
Query: 151 GPVLSCKVAVDASGQSKGYGFVQFDNDEAAQNAINKLNGMLINDKKVYVGL 201
G + + + + + F+++ + A+ A+ LN I K + + L
Sbjct: 294 GEIREIR----ETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340