Miyakogusa Predicted Gene

Lj5g3v1889480.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1889480.2 tr|F6HJC9|F6HJC9_VITVI tRNA pseudouridine
synthase A OS=Vitis vinifera GN=truA PE=3 SV=1,67.51,0,Pseudouridine
synthase,Pseudouridine synthase, catalytic domain; TruA,Pseudouridine
synthase I, TruA,CUFF.56115.2
         (427 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34150.1 | Symbols:  | Pseudouridine synthase family protein ...   496   e-140
AT3G06950.1 | Symbols:  | Pseudouridine synthase family protein ...    92   5e-19
AT1G76120.1 | Symbols:  | Pseudouridine synthase family protein ...    50   2e-06
AT1G76120.2 | Symbols:  | Pseudouridine synthase family protein ...    50   3e-06

>AT1G34150.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:12436086-12439237 FORWARD LENGTH=446
          Length = 446

 Score =  496 bits (1277), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/431 (56%), Positives = 310/431 (71%), Gaps = 23/431 (5%)

Query: 3   TQLSDVDHIATLQARVKELEAENAKLLSQLADSHIHEMEKKLHVSGEKNTGSIKGNRKSE 62
           ++++    +  L+ RVKELE ENAKLLSQ++     +ME K       +  S+  +    
Sbjct: 17  SEIAKETELVFLRNRVKELEVENAKLLSQVSSCQCQQMEVK-------HDRSLSDSSSLV 69

Query: 63  EKIEKMTGYNTRFMSHH-SKRYVALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRL 121
            +     G      SH  SKRYVALK+MYFGKRFYGF++EAQMEP++ESE+FKAL + RL
Sbjct: 70  RRRRVRKGDKNSIPSHLISKRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRL 129

Query: 122 LVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANT-----GSSGEIVEEQHEG 176
           LVGDKK+S YSRCGRTDKGVSS GQVIAL+LRS LK    ++     G +GE        
Sbjct: 130 LVGDKKDSCYSRCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGE------RP 183

Query: 177 EIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEGLNIPAMESAGIKL 236
           E DYVRVLNR LP+DIR++GW PAP+DFHARFSC +REYKYFFW++ LN+ AM+ AG K 
Sbjct: 184 EYDYVRVLNRALPDDIRVIGWSPAPIDFHARFSCYAREYKYFFWRQNLNLSAMDFAGKKF 243

Query: 237 IGEHDFRNFCKMDATNVHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFLWHQVRCMV 296
           IGEHDFRNFCKMD  NVH Y R +T FE+ P    + G+QL    +RGSAFLWHQ+RCMV
Sbjct: 244 IGEHDFRNFCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMV 303

Query: 297 AVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVPLVLQSCEFEDIKFMCSSDAGEA 356
           AVLF++G+G+ES +VID LLDT KTPRKPQY+++SE+PLVL++CEFE++ F+CS  A E+
Sbjct: 304 AVLFMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLRTCEFENVDFICSPGAAES 363

Query: 357 LRIHLVNECQTFQLQAAVFHEALLNCVPLLHDQSLPPSRGT----TKKKASYVPLMSRPT 412
           LR H  NE  T+QL++ ++ EAL NC+PL ++ S   S        KK+A +VPL+SRPT
Sbjct: 364 LRSHFKNESLTYQLESVIYQEALRNCLPLSNNVSTEESSCNGVEKKKKRAEHVPLLSRPT 423

Query: 413 EPSYEERRAKL 423
           EPSYEER AKL
Sbjct: 424 EPSYEERTAKL 434


>AT3G06950.1 | Symbols:  | Pseudouridine synthase family protein |
           chr3:2192869-2194254 FORWARD LENGTH=323
          Length = 323

 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 141/322 (43%), Gaps = 51/322 (15%)

Query: 68  MTGYNTRFMSHHSKRY-VALKVMYFGKRFYGFASEAQMEPTVESEIFKALAKIRLLVGDK 126
           MT  N+      S  Y   L + Y G RF G+  + +  PT++S + KAL +I  L   +
Sbjct: 26  MTNLNSSVKVSDSGAYKWRLVIAYDGTRFAGWQYQ-ESPPTIQSMLEKALIQITEL--GR 82

Query: 127 KESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANTGSSGEIVEEQHEGEID-YVRVLN 185
           KE Q    GRTD GV + GQV                      V   +   +D +   LN
Sbjct: 83  KELQLIGAGRTDAGVHAWGQV-------------------AHFVTPFNYTSLDSFHAALN 123

Query: 186 RVLPNDIRILGWCPAPVDFHARFSCLSREYKYFFWKEG----------------LNIPAM 229
            +LP DIR+     A  +FHARFS  S+ Y+Y  + +                 LN   M
Sbjct: 124 GLLPKDIRVRELSAAVPEFHARFSASSKVYRYQIYNDTFMDPFQRHWAYHCAYKLNASKM 183

Query: 230 ESAGIKLIGEHDFRNFCKMDATN-VHNYRRHITMFEIFPTDVRYGGNQLWVIKIRGSAFL 288
             A    +G+HDF  F      + V +  + I+ F++    ++ G   L  +++ GS FL
Sbjct: 184 REAANLFVGKHDFSAFANATREDGVPDPLKTISRFDV----IQMGS--LLQLEVEGSGFL 237

Query: 289 WHQVRCMVAVLFLVGKGLESPNVIDMLLDTNKTPRKPQYIMSSEVP--LVLQSCEFED-- 344
           + QVR MVA+L  +GK     +++ M+L+T       +Y      P  L L S ++++  
Sbjct: 238 YRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHGLCLVSVKYKEDH 297

Query: 345 IKFMCSSDAGEALRIHLVNECQ 366
           +K         + R H + +C+
Sbjct: 298 LKLPLDCPVTSSGRHHTITKCK 319


>AT1G76120.1 | Symbols:  | Pseudouridine synthase family protein |
           chr1:28558813-28560294 REVERSE LENGTH=463
          Length = 463

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 21/116 (18%)

Query: 104 MEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANT 163
           +E  +E  +F A A    + G  K   ++R  RTDKGVS+VGQV+               
Sbjct: 47  IEGELEEALFHAGAVPESIRGKPKLYDFARSARTDKGVSAVGQVV--------------- 91

Query: 164 GSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFF 219
             SG  + +     + +V  LN  LPN IRI G+      F ++  C  R Y Y  
Sbjct: 92  --SGRFIVDP----LGFVNRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYVYLL 141


>AT1G76120.2 | Symbols:  | Pseudouridine synthase family protein |
           chr1:28559224-28560294 REVERSE LENGTH=356
          Length = 356

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 21/116 (18%)

Query: 104 MEPTVESEIFKALAKIRLLVGDKKESQYSRCGRTDKGVSSVGQVIALYLRSNLKISGANT 163
           +E  +E  +F A A    + G  K   ++R  RTDKGVS+VGQV+               
Sbjct: 47  IEGELEEALFHAGAVPESIRGKPKLYDFARSARTDKGVSAVGQVV--------------- 91

Query: 164 GSSGEIVEEQHEGEIDYVRVLNRVLPNDIRILGWCPAPVDFHARFSCLSREYKYFF 219
             SG  + +     + +V  LN  LPN IRI G+      F ++  C  R Y Y  
Sbjct: 92  --SGRFIVD----PLGFVNRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYVYLL 141