Miyakogusa Predicted Gene
- Lj5g3v1888380.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1888380.1 Non Chatacterized Hit- tr|I1NH73|I1NH73_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.22176
PE,74.1,0,RRM_1,RNA recognition motif domain; CSTF2_hinge,Cleavage
stimulation factor subunit 2, hinge domain;,CUFF.56100.1
(526 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 312 4e-85
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 7e-12
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 68 2e-11
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 2e-11
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 2e-11
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 68 2e-11
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 65 1e-10
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 64 3e-10
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 8e-10
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 62 9e-10
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 62 9e-10
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 62 9e-10
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 62 1e-09
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 62 1e-09
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 62 1e-09
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 62 1e-09
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 62 1e-09
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 61 2e-09
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 61 2e-09
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 61 2e-09
AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 60 3e-09
AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 60 3e-09
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-09
AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 60 3e-09
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 60 4e-09
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 59 7e-09
AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 59 9e-09
AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-lik... 59 9e-09
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 59 9e-09
AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing fa... 59 1e-08
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 59 1e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 59 1e-08
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-08
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-08
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-08
AT1G73840.1 | Symbols: ESP1 | hydroxyproline-rich glycoprotein f... 57 3e-08
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 4e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 56 5e-08
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 56 5e-08
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 56 5e-08
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 56 6e-08
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 56 6e-08
AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 56 7e-08
AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 56 7e-08
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 56 7e-08
AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 55 9e-08
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 55 9e-08
AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 55 1e-07
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 55 1e-07
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 55 1e-07
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 2e-07
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 55 2e-07
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 54 3e-07
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 54 3e-07
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 53 4e-07
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 53 5e-07
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 53 5e-07
AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonu... 53 6e-07
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 7e-07
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 52 8e-07
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 52 9e-07
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 52 1e-06
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 52 1e-06
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 52 1e-06
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 52 1e-06
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 52 1e-06
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 52 1e-06
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 51 2e-06
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 51 2e-06
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 51 2e-06
AT5G44200.2 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |... 51 2e-06
AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |... 51 2e-06
AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 51 2e-06
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 51 2e-06
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 51 2e-06
AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 51 3e-06
AT4G10110.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 3e-06
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 50 4e-06
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 4e-06
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 50 5e-06
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 5e-06
AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splicin... 50 5e-06
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 49 6e-06
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 49 6e-06
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 49 8e-06
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 49 9e-06
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 312 bits (799), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 220/510 (43%), Positives = 269/510 (52%), Gaps = 94/510 (18%)
Query: 1 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDE 60
MASS SQ RCVFVGNIPYDATEEQL EIC EVGPVVSFRLV DRETGKPKGYGFCEYKDE
Sbjct: 1 MASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDE 60
Query: 61 ETALSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPGM---TANVDTQKQAGIP 117
ETALSARRNLQ YEINGRQLRVDFAENDKG D+ R+Q +GGPG+ T ++QKQ G P
Sbjct: 61 ETALSARRNLQSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQIGGP 120
Query: 118 VVHGEAVQHQPIGLHXXXXXXXXXXXXLGGPQSGIXXXXXXXXXXXXXXXDPLTLHLAKM 177
V ++ HQP+GLH LGGPQ G DPL LHLAKM
Sbjct: 121 V---DSNMHQPVGLHLATTAASVIAGALGGPQVG---SQFTQSNLQVPASDPLALHLAKM 174
Query: 178 SRFQLIEVISELKGMATQNNDLARQLLLSRPQLPKALFQAQIMLQMVTPQVLQMPNLRMV 237
SR QL E+IS +K MATQN + ARQLL+SRPQL KA+F AQ+ML +V+PQVLQ PN+
Sbjct: 175 SRSQLTEIISSIKLMATQNKEHARQLLVSRPQLLKAVFLAQVMLGIVSPQVLQSPNIVQA 234
Query: 238 SDQTSPSLANEGPGGQPALLQTLSGLPLYGQNKMQSGLTPYVEEGQVSIMPHNPLAPNQL 297
+ G Q A L + LP Q Q P
Sbjct: 235 PSHMT------GSSIQDAQLSGQNLLPPLAQRSQQLSRAP-------------------- 268
Query: 298 TAHSKPPVQPRIPLQHYPTNQVVQIGTMSGQSNLVLPSVRPPSGVDLPIRPPIQPTSSTA 357
HS+ PVQ P +Q+ Q+ G PS V+ P R ++ ++
Sbjct: 269 --HSQYPVQQS---SKQPFSQIPQLVAQPG-----------PSSVNPPPRSQVKVENAPF 312
Query: 358 LNQQMQGSLPHSVHVGRSTGAHNIQMVRPDTSFQPGPSTSSSAYSNTGVEK------TNM 411
QQ+ +P S ++G S+ Q P+ + QP A N+ +++ N
Sbjct: 313 QRQQV---VPASTNIGYSS-----QNSVPNNAIQPS-QVPHQALPNSVMQQGGQTVSLNF 363
Query: 412 VQDFSE-----SFTHPSKFMRSDKGRIPSLPAGIKDLPVTIGSSHVLGSSSLPAPTASKA 466
+ +E S PSK M+ + R SLP G HV S P ++A
Sbjct: 364 GKRINEGPPHQSMNRPSKMMKVEDRRTTSLPGG-----------HVSNSM---LPNQAQA 409
Query: 467 EVRYXXXXXXXXXXXXDVESVLLQQVLNLT 496
+ DV+S LLQQV+NLT
Sbjct: 410 PQTHISP---------DVQSTLLQQVMNLT 430
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 5 QSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETAL 64
+++H+ +FVGN+ + T E L +E G VV R+V D +TG+ +GYGF Y +
Sbjct: 174 ETEHK-LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEME 232
Query: 65 SARRNLQGYEINGRQLRVDFAENDK 89
+A +L G+E+ GR +RV+ A+ K
Sbjct: 233 TALESLDGFELEGRAIRVNLAQGKK 257
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 9 RC-----VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
RC +F+G + Y E+ L E + G VV R+++DRETG+ +G+GF + E A
Sbjct: 35 RCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94
Query: 64 LSARRNLQGYEINGRQLRVDFAENDK 89
SA + L G +++GR ++V++A ND+
Sbjct: 95 SSAIQALDGRDLHGRVVKVNYA-NDR 119
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VF+G +P D EE L ++C+E+G + RL+ DR++G KGY F +K ++ A A L
Sbjct: 98 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 157
Query: 71 QGYEINGRQLRVDFAE 86
E G+ +R +E
Sbjct: 158 HSKEFKGKTIRCSLSE 173
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 2 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEE 61
+++ +Q + ++V NIP + + EQL E+ Q G V ++V G + +GF Y +
Sbjct: 257 SAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVT--KIVTPPGKGGKRDFGFVHYAERS 314
Query: 62 TALSARRNLQGYEINGRQLRVDFAE 86
+AL A ++ + YE+NG+ L V A+
Sbjct: 315 SALKAVKDTERYEVNGQPLEVVLAK 339
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VF+G +P D EE L ++C+E+G + RL+ DR++G KGY F +K ++ A A L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 71 QGYEINGRQLRVDFAE 86
E G+ +R +E
Sbjct: 178 HSKEFKGKTIRCSLSE 193
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 2 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEE 61
+++ +Q + ++V NIP + + EQL E+ Q G V ++V G + +GF Y +
Sbjct: 285 SAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVT--KIVTPPGKGGKRDFGFVHYAERS 342
Query: 62 TALSARRNLQGYEINGRQLRVDFAE 86
+AL A ++ + YE+NG+ L V A+
Sbjct: 343 SALKAVKDTERYEVNGQPLEVVLAK 367
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VF+G +P D EE L ++C+E+G + RL+ DR++G KGY F +K ++ A A L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 71 QGYEINGRQLRVDFAE 86
E G+ +R +E
Sbjct: 178 HSKEFKGKTIRCSLSE 193
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 2 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEE 61
+++ +Q + ++V NIP + + EQL E+ Q G V ++V G + +GF Y +
Sbjct: 285 SAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVT--KIVTPPGKGGKRDFGFVHYAERS 342
Query: 62 TALSARRNLQGYEINGRQLRVDFAE 86
+AL A ++ + YE+NG+ L V A+
Sbjct: 343 SALKAVKDTERYEVNGQPLEVVLAK 367
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ + GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 437 NGIKMGDKTLTV 448
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V+VGN+P+D +L ++ E G VV R+V DRETG+ +G+GF D + A L
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 71 QGYEINGRQLRVDFAE 86
G + GR +RV+ AE
Sbjct: 306 DGQNLEGRAIRVNVAE 321
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 6 SQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 65
S+ +FVGN+ YD + L + ++ G V ++ +RET + +G+GF + A +
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 66 ARRNLQGYEINGRQLRVDFA 85
A Y++NGR L V+ A
Sbjct: 207 AVEKFNRYDLNGRLLTVNKA 226
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V+VGN+ + + L + E G VV R++ DR++G+ KG+GF Y + +A ++L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 71 QGYEINGRQLRVDFAE 86
G +++GRQ+RV AE
Sbjct: 266 DGADLDGRQIRVSEAE 281
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVGN+P++ QL ++ + G V ++ D+ TG+ +G+GF +A +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 71 QGYEINGRQLRVD 83
GYE++GR LRV+
Sbjct: 153 NGYELDGRPLRVN 165
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 1 MASSQSQHRCVFVGNIPYDATEEQLIEIC-QEVGPVVSFRLVIDRETGKPKGYGFCEYKD 59
MAS ++RC FVG + + AT+++ +E + G V+ +++ DRETG+ +G+GF +KD
Sbjct: 1 MASGDVEYRC-FVGGLAW-ATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58
Query: 60 EETALSARRNLQGYEINGRQLRV 82
E+ A + G +++GR + V
Sbjct: 59 EKAMKDAIEGMNGQDLDGRSITV 81
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+G + + + L + G VV ++++DRETG+ +G+GF + DE A +A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 71 QGYEINGRQLRVDFAENDK 89
G E+NGR +RV+ A ND+
Sbjct: 97 DGKELNGRHIRVNPA-NDR 114
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 9 RC-----VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
RC +FVG I Y E L E + G VV ++++DRETG+ +G+ F + E A
Sbjct: 29 RCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEA 88
Query: 64 LSARRNLQGYEINGRQLRVDFA 85
+A + L G +++GR++RV++A
Sbjct: 89 SNAMQ-LDGQDLHGRRIRVNYA 109
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 10/100 (10%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S+ ++RC FVG + + +E L + G V+ +++ DRE+G+ +G+GF +KDE+
Sbjct: 2 SEVEYRC-FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 64 LSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPG 103
A + G E++GR + V+ A++ +G GG G
Sbjct: 61 RDAIEEMNGKELDGRVITVNEAQS---------RGSGGGG 91
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++VGN+P+D +L + E G VV R+V DRETG+ +G+GF + +E A L
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 71 QGYEINGRQLRVDFAE 86
G + GR ++V+ AE
Sbjct: 269 DGQNLEGRAIKVNVAE 284
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVGN+PYD + L + ++ G V ++ +R+T + +G+GF E A A
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 71 QGYEINGRQLRVDFA 85
+E+NGR+L V+ A
Sbjct: 175 NSFEVNGRRLTVNRA 189
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+G + + + L + G VV ++++DRETG+ +G+GF + DE A +A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 71 QGYEINGRQLRVDFAENDK 89
G E+NGR +RV+ A ND+
Sbjct: 97 DGKELNGRHIRVNPA-NDR 114
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+G + + + L + G VV ++++DRETG+ +G+GF + DE A +A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 71 QGYEINGRQLRVDFAENDK 89
G E+NGR +RV+ A ND+
Sbjct: 97 DGKELNGRHIRVNPA-NDR 114
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+G + + + L + G VV ++++DRETG+ +G+GF + DE A +A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 71 QGYEINGRQLRVDFAENDK 89
G E+NGR +RV+ A ND+
Sbjct: 97 DGKELNGRHIRVNPA-NDR 114
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S+ ++RC FVG + + +E L + G V+ +++ DRE+G+ +G+GF +KDE+
Sbjct: 2 SEVEYRC-FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 64 LSARRNLQGYEINGRQLRVDFAE 86
A + G E++GR + V+ A+
Sbjct: 61 RDAIEEMNGKELDGRVITVNEAQ 83
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S+ ++RC FVG + + +E L + G V+ +++ DRE+G+ +G+GF +KDE+
Sbjct: 2 SEVEYRC-FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 64 LSARRNLQGYEINGRQLRVDFAE 86
A + G E++GR + V+ A+
Sbjct: 61 RDAIEEMNGKELDGRVITVNEAQ 83
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 1 MASSQSQHRCVFVGNIPYDATEEQLIEIC-QEVGPVVSFRLVIDRETGKPKGYGFCEYKD 59
MAS ++RC FVG + + AT+++ +E + G V+ +++ DRETG+ +G+GF +KD
Sbjct: 1 MASGDVEYRC-FVGGLAW-ATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD 58
Query: 60 EETALSARRNLQGYEINGRQLRVDFAE 86
E+ A + G +++GR + V+ A+
Sbjct: 59 EKAMKDAIEGMNGQDLDGRSITVNEAQ 85
>AT4G36690.2 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294591-17297609
REVERSE LENGTH=542
Length = 542
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ + G + F LV DRETG KGY FC Y+D A L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 421 NGIKMGDKTLTV 432
>AT4G36690.3 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294422-17297609
REVERSE LENGTH=565
Length = 565
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ + G + F LV DRETG KGY FC Y+D A L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 421 NGIKMGDKTLTV 432
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
VF+G +P D EE L ++C+E+G + RL+ DR++G KGY F +K ++ A A L
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 71 QGYEI 75
E
Sbjct: 178 HSKEF 182
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 2 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEE 61
+++ +Q + ++V NIP + + EQL E+ Q G V ++V G + +GF Y +
Sbjct: 285 SAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVT--KIVTPPGKGGKRDFGFVHYAERS 342
Query: 62 TALSARRNLQGYEINGRQLRVDFAE 86
+AL A ++ + YE+NG+ L V A+
Sbjct: 343 SALKAVKDTERYEVNGQPLEVVLAK 367
>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=551
Length = 551
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ + G + F LV DRETG KGY FC Y+D A L
Sbjct: 339 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 398
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 399 NGIKMGDKTLTV 410
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG +PY TE Q+ E+ + G + F LV DRETG KGY FC Y+D A L
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 71 QGYEINGRQLRV 82
G ++ + L V
Sbjct: 421 NGIKMGDKTLTV 432
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 2 ASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEE 61
++ ++Q V+VG + +EE L E+ + GPVV+ + DR T + YGF EY+ EE
Sbjct: 18 SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77
Query: 62 TALSARRNLQGYEINGRQLRVDFAENDK 89
A A + L +++G+ +RV+ A DK
Sbjct: 78 DADYAIKVLNMIKLHGKPIRVNKASQDK 105
>AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632695 FORWARD
LENGTH=287
Length = 287
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 10 CVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
+ V N+ +D +E L + ++ GPV L D TG P+G+GF ++ D A A+ +
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 70 LQGYEINGRQLRVDFAENDK 89
+ GY + GR+L V FAE ++
Sbjct: 97 MDGYLLLGRELTVVFAEENR 116
>AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33, At-SCL33 | SC35-like
splicing factor 33 | chr1:20630676-20632567 FORWARD
LENGTH=220
Length = 220
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 10 CVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
+ V N+ +D +E L + ++ GPV L D TG P+G+GF ++ D A A+ +
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 70 LQGYEINGRQLRVDFAENDK 89
+ GY + GR+L V FAE ++
Sbjct: 97 MDGYLLLGRELTVVFAEENR 116
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V+VG IP+D TE L+ + + G +V L+ D+ TGK KG+ F Y+D+ + + A NL
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 71 QGYEINGRQLRVD 83
G + GR ++VD
Sbjct: 98 NGALVLGRTIKVD 110
>AT3G13570.1 | Symbols: SCL30A, At-SCL30A | SC35-like splicing
factor 30A | chr3:4429564-4431602 REVERSE LENGTH=262
Length = 262
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 10 CVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
+ V N+ +D +E L ++ GPV L D TG P+G+GF ++ D A A+
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 70 LQGYEINGRQLRVDFA-ENDKGNDRNREQGRGG 101
+ GY + GR+L V FA EN K R + RGG
Sbjct: 98 MDGYLLLGRELTVVFAEENRKKPTEMRTRDRGG 130
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG + + + L + G V ++ DRETG+ +G+GF + E++A +A + +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 71 QGYEINGRQLRVDFA 85
G E+NGRQ+RV+ A
Sbjct: 97 DGKELNGRQIRVNLA 111
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG + + + L + G V ++ DRETG+ +G+GF + E++A +A + +
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 71 QGYEINGRQLRVDFA 85
G E+NGRQ+RV+ A
Sbjct: 97 DGKELNGRQIRVNLA 111
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S R V++GNIP T EQL ++ +E G V +++ D+ +G+ + +GF K E A
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDA 130
Query: 64 LSARRNLQGYEINGRQLRVDFAE 86
+ L G + GR+++V+ E
Sbjct: 131 NAVVEKLNGNTVEGREIKVNITE 153
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S R V++GNIP T EQL ++ +E G V +++ D+ +G+ + +GF K E A
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDA 130
Query: 64 LSARRNLQGYEINGRQLRVDFAE 86
+ L G + GR+++V+ E
Sbjct: 131 NAVVEKLNGNTVEGREIKVNITE 153
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+G + + E+ L + G V R+ D+ +G+ +G+GF ++ +E ALSA+ +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 71 QGYEINGRQLRVDFAENDKGNDRNREQGRGGPGMTANVDTQKQ 113
G + GR LR+ FA E+ RGGP + + K+
Sbjct: 103 DGKGLLGRPLRISFA---------LERVRGGPVVVPRLGKSKR 136
>AT1G73840.1 | Symbols: ESP1 | hydroxyproline-rich glycoprotein
family protein | chr1:27763937-27766328 REVERSE
LENGTH=388
Length = 388
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 170 LTLHLAKMSRFQLIEVISELKGMATQNNDLARQLLLSRPQLPKALFQAQIMLQMVTP 226
L +LA M++ QL +++S++K + QN+ AR++L+ P L KALFQAQIML MV P
Sbjct: 12 LPANLAGMTKSQLYDIMSQMKTLIDQNHQQAREILIRNPLLTKALFQAQIMLGMVQP 68
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++VG +P++ E L ++ G ++ +V DRETG+ +GYGF ++D E+A A +N
Sbjct: 54 IYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQNP 113
Query: 71 QGYEINGRQLRVDFA 85
+ I+GR+ + + A
Sbjct: 114 KPV-IDGREAKCNLA 127
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++VGN+ + + L + E G VV R++ DR++G+ KG+GF + A +L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 71 QGYEINGRQLRVDFAE 86
G +++GRQ+RV AE
Sbjct: 319 NGADLDGRQIRVSEAE 334
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVGN+ ++ QL ++ + G V ++ D+ TG+ +G+GF +A +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 71 QGYEINGRQLRVD 83
GYE GR LRV+
Sbjct: 161 NGYEFEGRPLRVN 173
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++VGN+ + + L + E G VV R++ DR++G+ KG+GF + A +L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 71 QGYEINGRQLRVDFAE 86
G +++GRQ+RV AE
Sbjct: 319 NGADLDGRQIRVSEAE 334
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVGN+ ++ QL ++ + G V ++ D+ TG+ +G+GF +A +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 71 QGYEINGRQLRVD 83
GYE GR LRV+
Sbjct: 161 NGYEFEGRPLRVN 173
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++VGN+ + + L + E G VV R++ DR++G+ KG+GF + A +L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 71 QGYEINGRQLRVDFAE 86
G +++GRQ+RV AE
Sbjct: 319 NGADLDGRQIRVSEAE 334
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVGN+ ++ QL ++ + G V ++ D+ TG+ +G+GF +A +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 71 QGYEINGRQLRVD 83
GYE GR LRV+
Sbjct: 161 NGYEFEGRPLRVN 173
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++VGN+ + + L + E G VV R++ DR++G+ KG+GF + A +L
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 71 QGYEINGRQLRVDFAE 86
G +++GRQ+RV AE
Sbjct: 340 NGADLDGRQIRVSEAE 355
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++VGN+PY T +L +I E G VV ++V D+ T + +G+GF E A A +
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 71 QGYEINGRQLRVDFAENDKGND 92
+I GR ++V+F E +G +
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGE 199
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V+ GN+ ++ T + L + + V+ +++ +R TG+ +G+GF ++ E SA +
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 71 QGYEINGRQLRVDFA 85
G E+ GR LR++ A
Sbjct: 281 NGVEVEGRALRLNLA 295
>AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S R V+VGN+P D E ++ ++ + GPVV L + +P GY F E+ D A
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKV---PPRPPGYAFVEFDDARDA 58
Query: 64 LSARRNLQGYEINGRQLRVDFA 85
A GY+ +G +LRV+ A
Sbjct: 59 EDAIHGRDGYDFDGHRLRVELA 80
>AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S R V+VGN+P D E ++ ++ + GPVV L + +P GY F E+ D A
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKV---PPRPPGYAFVEFDDARDA 58
Query: 64 LSARRNLQGYEINGRQLRVDFA 85
A GY+ +G +LRV+ A
Sbjct: 59 EDAIHGRDGYDFDGHRLRVELA 80
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVS-FRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
+FVG++ D T+ L+E + P V ++VIDR TG+ KGYGF + DE + A
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 70 LQGYEINGRQLRVDFAENDKGNDRNRE 96
+ G + R +R+ A + KG R+
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRD 243
>AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-628995 FORWARD LENGTH=285
Length = 285
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S R V+VGN+P D E ++ ++ + GPVV L + +P GY F E+ D A
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKV---PPRPPGYAFVEFDDARDA 58
Query: 64 LSARRNLQGYEINGRQLRVDFA 85
A GY+ +G +LRV+ A
Sbjct: 59 EDAIHGRDGYDFDGHRLRVELA 80
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVS-FRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
+FVG++ D T+ L+E + P V ++VIDR TG+ KGYGF + DE + A
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 70 LQGYEINGRQLRVDFAENDKGNDRNRE 96
+ G + R +R+ A + KG R+
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRD 243
>AT2G43370.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:18013431-18015376 FORWARD LENGTH=333
Length = 333
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG + + TE+ L E+ + G + + RLV TG +GYGF EY+ E+ L A +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 71 QGYEINGRQLRVDF 84
I+GR++ VD+
Sbjct: 126 HHSLIDGREIIVDY 139
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 3 SSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 62
S + +++G +P ++ LI + G +V +++ DR TG KGYGF +Y D +
Sbjct: 474 SKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQM 533
Query: 63 ALSARRNLQGYEINGRQLRVDFA 85
A +A + + GY GR L V A
Sbjct: 534 ANTAVQAMNGYRFEGRTLAVRIA 556
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 3 SSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 62
S + +++G +P ++ LI + G +V +++ DR TG KGYGF +Y D +
Sbjct: 474 SKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQM 533
Query: 63 ALSARRNLQGYEINGRQLRVDFA 85
A +A + + GY GR L V A
Sbjct: 534 ANTAVQAMNGYRFEGRTLAVRIA 556
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 3 SSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEET 62
S + +++G +P ++ LI + G +V +++ DR TG KGYGF +Y D +
Sbjct: 474 SKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQM 533
Query: 63 ALSARRNLQGYEINGRQLRVDFA 85
A +A + + GY GR L V A
Sbjct: 534 ANTAVQAMNGYRFEGRTLAVRIA 556
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSA 66
++VG +P+ +E LI + G ++ +V DRET + +GYGF +KD E+A A
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRA 70
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 6 SQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALS 65
S H +FVG++ + T+ L + R++ D++TG+ +G+GF +++++ A +
Sbjct: 145 SSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQT 204
Query: 66 ARRNLQGYEINGRQLRVDFAENDK--GNDRNREQGR 99
A + G ++ RQ+R ++A G D++ G+
Sbjct: 205 AINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGK 240
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG + +D TE QL G + ++++ R+TG+P+G+GF + D A A +++
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 71 QGYEINGRQLRVDFAE 86
G E+ + + V+ AE
Sbjct: 74 HGRELGNKVISVNKAE 89
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG + +D TE QL G + ++++ R+TG+P+G+GF + D A A +++
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 71 QGYEINGRQLRVDFAE 86
G E+ + + V+ AE
Sbjct: 74 HGRELGNKVISVNKAE 89
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V++G IP DATE L C +G V R++ ++++G KGY F ++ ++ A A L
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 71 QGYEINGRQLRV 82
+ G++++
Sbjct: 154 NNTDFRGKRIKC 165
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V++G IP DATE L C +G V R++ ++++G KGY F ++ ++ A A L
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 71 QGYEINGRQLRV 82
+ G++++
Sbjct: 154 NNTDFRGKRIKC 165
>AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1070543 FORWARD
LENGTH=178
Length = 178
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S R ++VGN+P D E ++ ++ + GPVV L I +P GY F E++D A
Sbjct: 2 SSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKI---PPRPPGYAFVEFEDARDA 58
Query: 64 LSARRNLQGYEINGRQLRVDFA 85
A GY+ +G LRV+ A
Sbjct: 59 DDAIYGRDGYDFDGHHLRVELA 80
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FV + T++ L ++ G + RL+ D ET +PKG+GF + E+ A A ++L
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 71 QGYEINGRQLRVDFAENDK----GNDRNREQGRG 100
G ++GR + V+ A+N + G + N+ + RG
Sbjct: 69 DGKIVDGRLIFVEVAKNAEEVRAGINSNKAEDRG 102
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 44/76 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+G + + TE+ L E + G VV ++V+DR + + KG+GF + + A A
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 71 QGYEINGRQLRVDFAE 86
G ++NGR + VD+A+
Sbjct: 96 NGQQLNGRTIFVDYAK 111
>AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1071313 FORWARD
LENGTH=278
Length = 278
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 1 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDE 60
M+S S R ++VGN+P D E ++ ++ + GPVV L I +P GY F E++D
Sbjct: 1 MSSRSS--RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKI---PPRPPGYAFVEFEDA 55
Query: 61 ETALSARRNLQGYEINGRQLRVDFA 85
A A GY+ +G LRV+ A
Sbjct: 56 RDADDAIYGRDGYDFDGHHLRVELA 80
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 7/121 (5%)
Query: 6 SQHRCVFVGNIPYDATEEQLIEICQEVGPVVS-FRLVIDRETGKPKGYGFCEYKDEETAL 64
S H +FVG++ + T+ L C V P S R++ D++TG+ +G+GF +++++ A
Sbjct: 136 SSHFNIFVGDLSPEVTDAMLF-TCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 194
Query: 65 SARRNLQGYEINGRQLRVDFAEN--DKGNDRNREQGRGGPGMTANVDTQKQAGIPVVHGE 122
+A + G + RQ+R ++A G D+ + +T+ V + G +GE
Sbjct: 195 TAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGV---SEDGKDTTNGE 251
Query: 123 A 123
A
Sbjct: 252 A 252
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 8 HRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 67
HR +FV +P++ T E L+ + + G + +VID+ TGK KG+GF +K + A A
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 68 R 68
+
Sbjct: 163 K 163
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 8 HRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 67
HR +FV +P++ T E L+ + + G + +VID+ TGK KG+GF +K + A A
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 68 R 68
+
Sbjct: 163 K 163
>AT3G50670.1 | Symbols: U1-70K, U1SNRNP | U1 small nuclear
ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE
LENGTH=427
Length = 427
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 8 HRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 67
++ +FV + Y+++E ++ + GP+ LV D+ T KPKGY F EY +A
Sbjct: 137 YKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAY 196
Query: 68 RNLQGYEINGRQLRVD 83
+ G +I+GR++ VD
Sbjct: 197 KQADGQKIDGRRVLVD 212
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+ NIP + +++L Q G V+S ++ +D+ TG K +GF Y + A +A +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 391
Query: 71 QGYEINGRQLRVDFAEND 88
G +++G++L+V ++
Sbjct: 392 NGCQLSGKKLKVQLKRDN 409
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+F+ NIP + +++L Q G V+S ++ +D+ TG K +GF Y + A +A +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTM 400
Query: 71 QGYEINGRQLRVDFAEND 88
G +++G++L+V ++
Sbjct: 401 NGCQLSGKKLKVQLKRDN 418
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEV-GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
VFVG++ D T+ L E + V V ++V DR TG+ KGYGF + DE + A
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 70 LQGYEINGRQLRVDFAENDK 89
+ G + R +R A N K
Sbjct: 235 MNGQYCSSRPMRTGPAANKK 254
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG + ++ + + ++ G +V ++ D+ TG+ KGYGF +K+ E A+ A +N+
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 71 QGYEINGRQLRVDFA 85
I+GR+ + A
Sbjct: 84 NP-VIDGRRANCNLA 97
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVV-SFRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
VFVG++ D T+ L E + P V S ++VID TG+ KGYGF + DE A
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 70 LQGYEINGRQLRVDFA 85
+ G + RQ+RV A
Sbjct: 264 MNGAYCSNRQMRVGIA 279
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 8 HRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 67
HR +FV + +D E LIE ++ G + + V D+ +GK KGYGF YK A +A
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 68 R 68
+
Sbjct: 199 K 199
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 8 HRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 67
HR +FV + +D E LIE ++ G + + V D+ +GK KGYGF YK A +A
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 68 R 68
+
Sbjct: 199 K 199
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 8 HRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 67
HR +FV + +D E LIE ++ G + + V D+ +GK KGYGF YK A +A
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 68 R 68
+
Sbjct: 199 K 199
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 8 HRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 67
HR +FV + +D E LIE ++ G + + V D+ +GK KGYGF YK A +A
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 68 R 68
+
Sbjct: 199 K 199
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 8 HRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSAR 67
HR +FV + +D E LIE ++ G + + V D+ +GK KGYGF YK A +A
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 68 R 68
+
Sbjct: 199 K 199
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 5 QSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKD---EE 61
QS + +F+G I +D EE+L E G V+ ++ DR TG+ +G+GF + D E
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
Query: 62 TALSARRNLQG 72
++ + N+ G
Sbjct: 62 IVITEKHNIDG 72
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 5 QSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKD---EE 61
QS + +F+G I +D EE+L E G V+ ++ DR TG+ +G+GF + D E
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
Query: 62 TALSARRNLQG 72
++ + N+ G
Sbjct: 62 IVITEKHNIDG 72
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++VG++ ++ T+ QL + EV VVS R+ D T GYG+ Y + + A A + L
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 71 QGYEINGRQLRVDF 84
+NG+ +R+ +
Sbjct: 108 NYSYLNGKMIRITY 121
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 10 CVFVGNIPYDATEEQLIEICQEV-GPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 68
+FVG++ + T+ L + + V G V ++V+DR TG+ KGYGF + DE + A
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 69 NLQGYEINGRQLRVDFAEN 87
+ G + R +R+ A N
Sbjct: 215 EMNGQYCSTRPMRIGPAAN 233
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 9 RCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARR 68
R ++VGN+ ++ +E QL +I + GPV +L +D ETG+ KG+GF ++ E + +A+
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQI 324
Query: 69 NLQG-YEINGRQLRV 82
L G EI GR ++V
Sbjct: 325 ALNGKLEIAGRTIKV 339
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
+Q + +F GN+ Y + +E G VV RL + G KGYG E+ E A
Sbjct: 379 TQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLS-SFDDGSFKGYGHIEFASPEEA 437
Query: 64 LSARRNLQGYEINGRQLRVDFAENDKGNDRNREQGRGGPG 103
A + G + GR +R+D A N++G RN GR G G
Sbjct: 438 QKA-LEMNGKLLLGRDVRLDLA-NERGTPRNSNPGRKGEG 475
>AT5G44200.2 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |
chr5:17802062-17803875 REVERSE LENGTH=257
Length = 257
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V++GN+ + TEEQL E+ G + + +D+ T P G+ F + E A + +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 71 QGYEINGRQLRVDFAENDKGNDRNREQGRGGPG 103
G ++ R +RVDF D G R+ GRG G
Sbjct: 96 SGTILDDRPIRVDF---DWGFQEGRQWGRGRSG 125
>AT5G44200.1 | Symbols: CBP20, ATCBP20 | CAP-binding protein 20 |
chr5:17802062-17803875 REVERSE LENGTH=257
Length = 257
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V++GN+ + TEEQL E+ G + + +D+ T P G+ F + E A + +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 71 QGYEINGRQLRVDFAENDKGNDRNREQGRGGPG 103
G ++ R +RVDF D G R+ GRG G
Sbjct: 96 SGTILDDRPIRVDF---DWGFQEGRQWGRGRSG 125
>AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2942887-2945818 REVERSE LENGTH=268
Length = 268
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S +R ++VGN+P D + ++ ++ + GP+V L I +P GY F E++D A
Sbjct: 2 SSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKI---PPRPPGYAFVEFEDPRDA 58
Query: 64 LSARRNLQGYEINGRQLRVDFA 85
A GY+ +G +LRV+ A
Sbjct: 59 DDAIYGRDGYDFDGCRLRVEIA 80
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++VG++ T+ QL E + G VVS R+ D T + GYG+ Y + A A L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 71 QGYEINGRQLRVDFAEND 88
+NGR +RV ++ D
Sbjct: 107 NFMALNGRAIRVMYSVRD 124
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++VG++ T+ QL E + G VVS R+ D T + GYG+ Y + A A L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 71 QGYEINGRQLRVDFAEND 88
+NGR +RV ++ D
Sbjct: 107 NFMALNGRAIRVMYSVRD 124
>AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2943528-2945818 REVERSE LENGTH=256
Length = 256
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S +R ++VGN+P D + ++ ++ + GP+V L I +P GY F E++D A
Sbjct: 2 SSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKI---PPRPPGYAFVEFEDPRDA 58
Query: 64 LSARRNLQGYEINGRQLRVDFA 85
A GY+ +G +LRV+ A
Sbjct: 59 DDAIYGRDGYDFDGCRLRVEIA 80
>AT4G10110.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:6309606-6310809 REVERSE LENGTH=173
Length = 173
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V++GN+ ++ L +I + G V+ + D+ET KPKG+ F EY+ EE A A +
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLF 68
Query: 71 QGY-EINGRQLRVDFAENDK 89
G + R L+ + DK
Sbjct: 69 SGLVSLYNRTLKFAISGQDK 88
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FV N+PY ATEE+L+E G + LV+D+ET + +G + Y E A A L
Sbjct: 296 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 355
Query: 71 QGYEINGRQLRV 82
GR L +
Sbjct: 356 DNSSFQGRLLHI 367
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
V+VG +PYD TEE + + G V++ ++V DR + K YGF + + +A A ++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDAIEDM 67
Query: 71 QGYEINGRQLRV 82
G I GR +RV
Sbjct: 68 DGKSIGGRAVRV 79
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 10 CVFVGNIPYDATEEQLIEICQEVGPVV-SFRLVIDRETGKPKGYGFCEYKDEETALSARR 68
+FVG++ D ++ L E E P V + ++V+D TG+ KGYGF + DE A
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 69 NLQGYEINGRQLRV 82
+ G + + R +R+
Sbjct: 258 EMNGVKCSSRAMRI 271
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 45/77 (58%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
++V + + TE+ L + ++ G ++ +V+D+ +PKG+ F Y+ EE A+ A + +
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 71 QGYEINGRQLRVDFAEN 87
G ++GR + V+ A+
Sbjct: 139 HGKFLDGRVIFVEEAKT 155
>AT1G55310.3 | Symbols: SR33, SCL33, At-SCL33 | SC35-like splicing
factor 33 | chr1:20630676-20632695 FORWARD LENGTH=300
Length = 300
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETG------------KPKGYGFCEYK 58
+ V N+ +D +E L + ++ GPV L D TG P+G+GF ++
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFM 97
Query: 59 DEETALSARRNLQGYEINGRQLRVDFAENDKGND---RNREQGRG 100
D A A+ ++ GY + GR+L V FAE ++ R RE+G G
Sbjct: 98 DPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGG 142
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 4 SQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETA 63
S+ ++RC FVG + + +E L + G V+ +++ DRE+G+ +G+GF +KDE+
Sbjct: 2 SEVEYRC-FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query: 64 LSA 66
A
Sbjct: 61 RDA 63
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVV-SFRLVIDRETGKPKGYGFCEYKDEETALSARRN 69
+FVG++ D ++ L+E P V ++VID TG+ KGYGF + DE A
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 70 LQGYEINGRQLRVDFA 85
+ G + RQ+RV A
Sbjct: 275 MNGAFCSSRQMRVGIA 290
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 11 VFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNL 70
+FVG + E L E G +V +V+DRE+G +G+GF Y E A +A + +
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 71 QGYEINGRQLRV 82
Q E++GR + V
Sbjct: 98 QNKELDGRIIGV 109
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 10 CVFVGNIPYDATEEQLIEICQEVGPVV-SFRLVIDRETGKPKGYGFCEYKDEETALSARR 68
+FVG++ D ++ L E E P V + ++V+D TG+ KGYGF + DE A
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 69 NLQGYEINGRQLRV 82
+ G + + R +R+
Sbjct: 258 EMNGVKCSSRAMRI 271