Miyakogusa Predicted Gene

Lj5g3v1872920.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1872920.1 Non Chatacterized Hit- tr|G4LZT5|G4LZT5_SCHMA
Receptor tyrosine phosphatase type r2a,putative
OS=Sch,28.29,0.00000000000001,TYR_PHOSPHATASE_PTP,Protein-tyrosine
phosphatase, receptor/non-receptor type;
TYR_PHOSPHATASE_2,Prot,CUFF.56249.1
         (336 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71860.3 | Symbols: PTP1, ATPTP1 | protein tyrosine phosphata...   447   e-126
AT1G71860.1 | Symbols: PTP1, ATPTP1 | protein tyrosine phosphata...   447   e-126
AT1G71860.2 | Symbols: PTP1, ATPTP1 | protein tyrosine phosphata...   330   8e-91

>AT1G71860.3 | Symbols: PTP1, ATPTP1 | protein tyrosine phosphatase
           1 | chr1:27026866-27028675 FORWARD LENGTH=340
          Length = 340

 Score =  447 bits (1151), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 208/300 (69%), Positives = 240/300 (80%), Gaps = 3/300 (1%)

Query: 34  DQLKHCTQALSLFKQKLLNPHTISQEFAYLQTNRFTPSQMKRSCNVALDPVNSSKNRYTD 93
           DQL HC QAL +F+ K+ NP +I+ EF  LQ NR  PS++  +  VA++ VN  KNRY+D
Sbjct: 36  DQLNHCHQALGVFRGKIQNPDSIAHEFTGLQANRMWPSELLLNSTVAMNSVNVEKNRYSD 95

Query: 94  VIPFDKNRVVLKSSTDYRPAALGYINASFVSTSSPGVVASQFIATQGPLPHTYEDLWEMV 153
           V+PFDKNR+VL    D   +A GY+NAS + TS    + SQFIATQGPLPHT ED WEMV
Sbjct: 96  VVPFDKNRIVLNPCKD--SSAKGYVNASLIKTSESESI-SQFIATQGPLPHTMEDFWEMV 152

Query: 154 IQYHCPAIVMLTRLVDNYKMVKCGDYFQSEDGPREFGNISVNCKWAKTTEASLVLRHLEV 213
           IQ HCP IVMLTRLVDN + VKCGDYFQ EDGPREFGNIS+  KW KTT+ SL+LR+LEV
Sbjct: 153 IQQHCPIIVMLTRLVDNNRTVKCGDYFQDEDGPREFGNISLTTKWIKTTDTSLMLRNLEV 212

Query: 214 NRSEGEGAPLSVLHIQYPEWPDHGVPKDTSAVREILKRLYHLPPNLGPIVVHCSAGIGRT 273
           N  E E  P+SVLHIQYPEWPDHGVPKDT AVREILKRLY +PP+LGPI+VHCSAGIGRT
Sbjct: 213 NYKETEDQPMSVLHIQYPEWPDHGVPKDTVAVREILKRLYQVPPSLGPIIVHCSAGIGRT 272

Query: 274 GTYCTIHNAIQRILAGDMSAVDIANTVAMFRSQRIGMVQTQEQYIFCYEAIMDELEDLVS 333
           GTYC IHN IQRILAGDMSA+D+A TVA+FR QRIGMVQT +QY FCY AI+DELEDL +
Sbjct: 273 GTYCAIHNTIQRILAGDMSALDLAKTVALFRKQRIGMVQTMDQYFFCYNAIVDELEDLTA 332


>AT1G71860.1 | Symbols: PTP1, ATPTP1 | protein tyrosine phosphatase
           1 | chr1:27026866-27028675 FORWARD LENGTH=340
          Length = 340

 Score =  447 bits (1151), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 208/300 (69%), Positives = 240/300 (80%), Gaps = 3/300 (1%)

Query: 34  DQLKHCTQALSLFKQKLLNPHTISQEFAYLQTNRFTPSQMKRSCNVALDPVNSSKNRYTD 93
           DQL HC QAL +F+ K+ NP +I+ EF  LQ NR  PS++  +  VA++ VN  KNRY+D
Sbjct: 36  DQLNHCHQALGVFRGKIQNPDSIAHEFTGLQANRMWPSELLLNSTVAMNSVNVEKNRYSD 95

Query: 94  VIPFDKNRVVLKSSTDYRPAALGYINASFVSTSSPGVVASQFIATQGPLPHTYEDLWEMV 153
           V+PFDKNR+VL    D   +A GY+NAS + TS    + SQFIATQGPLPHT ED WEMV
Sbjct: 96  VVPFDKNRIVLNPCKD--SSAKGYVNASLIKTSESESI-SQFIATQGPLPHTMEDFWEMV 152

Query: 154 IQYHCPAIVMLTRLVDNYKMVKCGDYFQSEDGPREFGNISVNCKWAKTTEASLVLRHLEV 213
           IQ HCP IVMLTRLVDN + VKCGDYFQ EDGPREFGNIS+  KW KTT+ SL+LR+LEV
Sbjct: 153 IQQHCPIIVMLTRLVDNNRTVKCGDYFQDEDGPREFGNISLTTKWIKTTDTSLMLRNLEV 212

Query: 214 NRSEGEGAPLSVLHIQYPEWPDHGVPKDTSAVREILKRLYHLPPNLGPIVVHCSAGIGRT 273
           N  E E  P+SVLHIQYPEWPDHGVPKDT AVREILKRLY +PP+LGPI+VHCSAGIGRT
Sbjct: 213 NYKETEDQPMSVLHIQYPEWPDHGVPKDTVAVREILKRLYQVPPSLGPIIVHCSAGIGRT 272

Query: 274 GTYCTIHNAIQRILAGDMSAVDIANTVAMFRSQRIGMVQTQEQYIFCYEAIMDELEDLVS 333
           GTYC IHN IQRILAGDMSA+D+A TVA+FR QRIGMVQT +QY FCY AI+DELEDL +
Sbjct: 273 GTYCAIHNTIQRILAGDMSALDLAKTVALFRKQRIGMVQTMDQYFFCYNAIVDELEDLTA 332


>AT1G71860.2 | Symbols: PTP1, ATPTP1 | protein tyrosine phosphatase
           1 | chr1:27026866-27028395 FORWARD LENGTH=277
          Length = 277

 Score =  330 bits (846), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 155/233 (66%), Positives = 181/233 (77%), Gaps = 3/233 (1%)

Query: 34  DQLKHCTQALSLFKQKLLNPHTISQEFAYLQTNRFTPSQMKRSCNVALDPVNSSKNRYTD 93
           DQL HC QAL +F+ K+ NP +I+ EF  LQ NR  PS++  +  VA++ VN  KNRY+D
Sbjct: 36  DQLNHCHQALGVFRGKIQNPDSIAHEFTGLQANRMWPSELLLNSTVAMNSVNVEKNRYSD 95

Query: 94  VIPFDKNRVVLKSSTDYRPAALGYINASFVSTSSPGVVASQFIATQGPLPHTYEDLWEMV 153
           V+PFDKNR+VL    D   +A GY+NAS + TS    + SQFIATQGPLPHT ED WEMV
Sbjct: 96  VVPFDKNRIVLNPCKD--SSAKGYVNASLIKTSESESI-SQFIATQGPLPHTMEDFWEMV 152

Query: 154 IQYHCPAIVMLTRLVDNYKMVKCGDYFQSEDGPREFGNISVNCKWAKTTEASLVLRHLEV 213
           IQ HCP IVMLTRLVDN + VKCGDYFQ EDGPREFGNIS+  KW KTT+ SL+LR+LEV
Sbjct: 153 IQQHCPIIVMLTRLVDNNRTVKCGDYFQDEDGPREFGNISLTTKWIKTTDTSLMLRNLEV 212

Query: 214 NRSEGEGAPLSVLHIQYPEWPDHGVPKDTSAVREILKRLYHLPPNLGPIVVHC 266
           N  E E  P+SVLHIQYPEWPDHGVPKDT AVREILKRLY +PP+LGPI+VHC
Sbjct: 213 NYKETEDQPMSVLHIQYPEWPDHGVPKDTVAVREILKRLYQVPPSLGPIIVHC 265