Miyakogusa Predicted Gene

Lj5g3v1871880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1871880.1 Non Chatacterized Hit- tr|B9S9Q5|B9S9Q5_RICCO 30S
ribosomal protein S10, putative OS=Ricinus communi,100,2e-32,Ribosomal
protein S10,Ribosomal protein S10; RIBOSOMALS10,Ribosomal protein S10;
no description,Ribo,NODE_21703_length_544_cov_773.376831.path2.1
         (66 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13120.2 | Symbols:  | Ribosomal protein S10p/S20e family pro...   139   3e-34
AT3G13120.1 | Symbols:  | Ribosomal protein S10p/S20e family pro...   139   3e-34

>AT3G13120.2 | Symbols:  | Ribosomal protein S10p/S20e family
           protein | chr3:4220310-4221526 REVERSE LENGTH=191
          Length = 191

 Score =  139 bits (350), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 65/66 (98%), Positives = 66/66 (100%)

Query: 1   MGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGV 60
           MGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR+IDILYPTAQTIDSLMQLDLPAGV
Sbjct: 126 MGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGV 185

Query: 61  DVEVKL 66
           DVEVKL
Sbjct: 186 DVEVKL 191


>AT3G13120.1 | Symbols:  | Ribosomal protein S10p/S20e family
           protein | chr3:4220310-4221526 REVERSE LENGTH=191
          Length = 191

 Score =  139 bits (350), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 65/66 (98%), Positives = 66/66 (100%)

Query: 1   MGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGV 60
           MGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR+IDILYPTAQTIDSLMQLDLPAGV
Sbjct: 126 MGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGV 185

Query: 61  DVEVKL 66
           DVEVKL
Sbjct: 186 DVEVKL 191