Miyakogusa Predicted Gene
- Lj5g3v1869810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1869810.1 Non Chatacterized Hit- tr|I1NH95|I1NH95_SOYBN
Uncharacterized protein OS=Glycine max PE=3 SV=1,77.51,0,no
description,NULL; seg,NULL; TRNA NUCLEOTIDYLTRANSFERASE,NULL;
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A),CUFF.56091.1
(576 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G22660.1 | Symbols: | Polynucleotide adenylyltransferase fam... 556 e-158
AT1G22660.2 | Symbols: | Polynucleotide adenylyltransferase fam... 552 e-157
AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase fam... 70 6e-12
AT5G23690.1 | Symbols: | Polynucleotide adenylyltransferase fam... 60 4e-09
AT1G28090.2 | Symbols: | Polynucleotide adenylyltransferase fam... 50 3e-06
AT1G28090.3 | Symbols: | Polynucleotide adenylyltransferase fam... 50 3e-06
AT1G28090.1 | Symbols: | Polynucleotide adenylyltransferase fam... 50 3e-06
>AT1G22660.1 | Symbols: | Polynucleotide adenylyltransferase family
protein | chr1:8017410-8021538 FORWARD LENGTH=605
Length = 605
Score = 556 bits (1434), Expect = e-158, Method: Compositional matrix adjust.
Identities = 300/604 (49%), Positives = 399/604 (66%), Gaps = 52/604 (8%)
Query: 18 NSFAHTPRTLLLQPPAK--------------TLVLLRAAPTPSFRC----SACAPMST-- 57
N+ + P++L L P + + LLR + S C S A M+
Sbjct: 9 NTLINLPKSLFLISPFRFRNLNRSLTVASRISSTLLRVSGVSSRPCGYWFSTNAAMTNVG 68
Query: 58 --------HLHVRDGIEPSLKEEEIFDRLRKTLSHFHLDTQLRVAGGWVRDKLLGKECKD 109
+ +++ IE + KE +IFDRL TL + +LDTQLRVAGGWVRDKLLGKE D
Sbjct: 69 EEDKQSIPSIELKENIELTDKERKIFDRLLSTLRYCNLDTQLRVAGGWVRDKLLGKESDD 128
Query: 110 IDIAIDNMMGTEFADKVREYSLSFGKEEDVKGVHVIESNPDQSKHLETARMSLFGQEIDF 169
IDIAIDNM G+EF DK +EY S ++E+V+G VIE NPDQSKHLETA++ ++ Q IDF
Sbjct: 129 IDIAIDNMSGSEFLDKFKEYLSS--RDEEVQGDTVIERNPDQSKHLETAKLRIYDQWIDF 186
Query: 170 VNLRSEEYTENSRIPSKQSFGTPEEDAYRRDLTINSLFYNINTKLVEDFTKRGISDLKSG 229
VNLRSEEYTENSRIP+ + FGT ++DA+RRDLTINSLFYNIN+ VED T+RGI DLKSG
Sbjct: 187 VNLRSEEYTENSRIPTMK-FGTAKDDAFRRDLTINSLFYNINSGAVEDLTERGIDDLKSG 245
Query: 230 KIVTPLPPKSTFLDDPLRVLRAIRFCARFDFTLDEXXXXXXXXXXXXXXXXXXISRERIG 289
KIVTPLP K+TFLDDPLRVLRA+RF ARF FTLDE ISRERIG
Sbjct: 246 KIVTPLPAKATFLDDPLRVLRAVRFGARFGFTLDEELKEAASSEEVRVALGEKISRERIG 305
Query: 290 TEIDLMISGNQPVKAMTYISELTIFWIVFSLPPESVPAIPDGCESLCISYLDTAWNLIRL 349
EIDLMISGN PV A+TY+S+L +F +VF+LP + P+ P+ C SL SYL+ W+L++
Sbjct: 306 NEIDLMISGNGPVSAVTYLSDLKLFSVVFALPSSAEPSPPENCGSLSQSYLEAMWSLLKT 365
Query: 350 LGESFFTVKKEAEQKRLALYAALFLPLRNTTYREKKNKKIPVVNHIIRESLKRKAKDAET 409
F+ EQ+RLALYAA+FLP R T Y++ K K IPVVNHI + S+KRK DAET
Sbjct: 366 PRPGKFS----GEQRRLALYAAMFLPFRKTVYKDTKGKSIPVVNHIFKFSMKRKTSDAET 421
Query: 410 VLDLYRASYKLSLLIPYLVSGEDIQVIDHDWMRHVTD-----------VPVSSRVRVLTG 458
V+++++ + + LIP L +D+++ + W + + +P +S++RVLTG
Sbjct: 422 VMNIHQTTERFRSLIPSLEVKKDVELDELTWAADILEHWKSITLNDPVIPATSKIRVLTG 481
Query: 459 FLLREIKHYWRV-----ALLMSTIVHPIDINDTEDEYSQLCKRRDLFSTVENSIIKLGLD 513
FLLR+IK +WRV LL +T+ D D QL + R+ + TVE +I +LGLD
Sbjct: 482 FLLRDIKDFWRVSLLTSLLLSATVDGSNDHQDIGQLDFQLERMRETYLTVEATIHELGLD 541
Query: 514 EVWDAKQLINGKDVMNTLQVKGGP-LVKEWLDKAMAWQLAYPSGTAEECIEWLTEANSKR 572
++WDAK L+NG+++M ++KGG L++EW K + WQLAYP+GTAEEC EW+ + +KR
Sbjct: 542 KIWDAKPLVNGREIMQIAELKGGSRLIREWQQKLLTWQLAYPNGTAEECKEWMRDIKAKR 601
Query: 573 VKLE 576
++E
Sbjct: 602 QRIE 605
>AT1G22660.2 | Symbols: | Polynucleotide adenylyltransferase family
protein | chr1:8017410-8021538 FORWARD LENGTH=603
Length = 603
Score = 552 bits (1422), Expect = e-157, Method: Compositional matrix adjust.
Identities = 300/604 (49%), Positives = 399/604 (66%), Gaps = 54/604 (8%)
Query: 18 NSFAHTPRTLLLQPPAK--------------TLVLLRAAPTPSFRC----SACAPMST-- 57
N+ + P++L L P + + LLR + S C S A M+
Sbjct: 9 NTLINLPKSLFLISPFRFRNLNRSLTVASRISSTLLRVSGVSSRPCGYWFSTNAAMTNVG 68
Query: 58 --------HLHVRDGIEPSLKEEEIFDRLRKTLSHFHLDTQLRVAGGWVRDKLLGKECKD 109
+ +++ IE + KE +IFDRL TL + +LDTQLRVAGGWVRDKLLGKE D
Sbjct: 69 EEDKQSIPSIELKENIELTDKERKIFDRLLSTLRYCNLDTQLRVAGGWVRDKLLGKESDD 128
Query: 110 IDIAIDNMMGTEFADKVREYSLSFGKEEDVKGVHVIESNPDQSKHLETARMSLFGQEIDF 169
IDIAIDNM G+EF DK +EY S ++E+V+G VIE NPDQSKHLETA++ ++ Q IDF
Sbjct: 129 IDIAIDNMSGSEFLDKFKEYLSS--RDEEVQGDTVIERNPDQSKHLETAKLRIYDQWIDF 186
Query: 170 VNLRSEEYTENSRIPSKQSFGTPEEDAYRRDLTINSLFYNINTKLVEDFTKRGISDLKSG 229
VNLRSEEYTENSRIP+ + FGT ++DA+RRDLTINSLFYNIN+ VED T+RGI DLKSG
Sbjct: 187 VNLRSEEYTENSRIPTMK-FGTAKDDAFRRDLTINSLFYNINSGAVEDLTERGIDDLKSG 245
Query: 230 KIVTPLPPKSTFLDDPLRVLRAIRFCARFDFTLDEXXXXXXXXXXXXXXXXXXISRERIG 289
KIVTPLP K+TFLDDPLRVLRA+RF ARF FTLDE ISRERIG
Sbjct: 246 KIVTPLPAKATFLDDPLRVLRAVRFGARFGFTLDEELKEAASSEEVRVALGEKISRERIG 305
Query: 290 TEIDLMISGNQPVKAMTYISELTIFWIVFSLPPESVPAIPDGCESLCISYLDTAWNLIRL 349
EIDLMISGN PV A+TY+S+L +F +VF+LP + P+ P+ C SL SYL+ W+L++
Sbjct: 306 NEIDLMISGNGPVSAVTYLSDLKLFSVVFALPSSAEPSPPENCGSLSQSYLEAMWSLLKT 365
Query: 350 LGESFFTVKKEAEQKRLALYAALFLPLRNTTYREKKNKKIPVVNHIIRESLKRKAKDAET 409
F+ EQ+RLALYAA+FLP R T Y++ K K IPVVNHI + S+KRK DAET
Sbjct: 366 PRPGKFS----GEQRRLALYAAMFLPFRKTVYKDTKGKSIPVVNHIFKFSMKRKTSDAET 421
Query: 410 VLDLYRASYKLSLLIPYLVSGEDIQVIDHDWMRHVTD-----------VPVSSRVRVLTG 458
V+++++ + + LIP L +D+++ + W + + +P +S++RVLTG
Sbjct: 422 VMNIHQTTERFRSLIPSLEVKKDVELDELTWAADILEHWKSITLNDPVIPATSKIRVLTG 481
Query: 459 FLLREIKHYWRV-----ALLMSTIVHPIDINDTEDEYSQLCKRRDLFSTVENSIIKLGLD 513
FLLR+IK +WRV LL +T+ D D QL + R+ + TVE +I +LGLD
Sbjct: 482 FLLRDIKDFWRVSLLTSLLLSATVDGSNDHQDIGQLDFQLERMRETYLTVEATIHELGLD 541
Query: 514 EVWDAKQLINGKDVMNTLQVKGGP-LVKEWLDKAMAWQLAYPSGTAEECIEWLTEANSKR 572
++WDAK L+NG+++M ++KGG L++EW K + WQLAYP+GTAEEC EW+ + +KR
Sbjct: 542 KIWDAKPLVNGREIMQIAELKGGSRLIREW--KLLTWQLAYPNGTAEECKEWMRDIKAKR 599
Query: 573 VKLE 576
++E
Sbjct: 600 QRIE 603
>AT3G48830.1 | Symbols: | polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
| chr3:18103272-18110216 FORWARD LENGTH=881
Length = 881
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 29/180 (16%)
Query: 93 VAGGWVRDKLLGKECKDIDIAIDNMMGTEFADKVREYSLS--FGKEEDVKGVHVIESNPD 150
+ GG VRD +L + KD DI + E + VR +S GK+ + VH+ +
Sbjct: 96 LVGGCVRDLILKRTPKDFDI----LTSAELREVVRSFSRCEIIGKKFPICHVHIGNDMIE 151
Query: 151 QSKHLETARMSLFGQEIDFVNLRSEEYTENSRIPSKQSFGTPEEDAYR------RDLTIN 204
S +A+ SL N+R S +S G+ +ED+ R RD TIN
Sbjct: 152 VSSFSTSAQNSL----------------RNTRTGSGKSNGSYDEDSIRFNNCLQRDFTIN 195
Query: 205 SLFYNINTKLVEDFTKRGISDLKSGKIVTPLPPKSTFLDDPLRVLRAIRFCARFDFTLDE 264
L ++ K++ D+ GI D+K K+ T ++F +D R+LR R AR FT+ +
Sbjct: 196 GLMFDPYAKVIYDYLG-GIEDIKKAKVRTVFHAGTSFQEDSARILRGTRIAARLGFTISK 254
>AT5G23690.1 | Symbols: | Polynucleotide adenylyltransferase family
protein | chr5:7987664-7990466 FORWARD LENGTH=527
Length = 527
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 93 VAGGWVRDKLLGKECKDIDIAIDNMMGTEFADKVREYSLS--FGKEEDVKGVHVIESNPD 150
+ GG VRD +L + KD DI + E + VR + G+ + VH+ + +
Sbjct: 99 LVGGCVRDLILKRTPKDFDI----LTSAELREVVRTFPRCEIVGRRFPICHVHIGDDLIE 154
Query: 151 QSKHLETARMSLFGQEIDFVNLRSEEYTENSRIPSKQSFGT-PEEDAYR------RDLTI 203
S +A+ S + N+R K+S G+ +ED R RD TI
Sbjct: 155 VSSFSTSAQNS----------------SRNTRTECKESSGSDGDEDCIRLNNCLQRDFTI 198
Query: 204 NSLFYNINTKLVEDFTKRGISDLKSGKIVTPLPPKSTFLDDPLRVLRAIRFCARFDFTLD 263
N L ++ K+V D+ G+ D++ K+ T + ++F D R+LRAIR AR F +
Sbjct: 199 NGLMFDPYAKVVYDYLG-GMEDIRKAKVRTVIHAGTSFHQDCARILRAIRIAARLGFRMS 257
Query: 264 E 264
+
Sbjct: 258 K 258
>AT1G28090.2 | Symbols: | Polynucleotide adenylyltransferase family
protein | chr1:9796045-9798891 FORWARD LENGTH=505
Length = 505
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 194 EDAYRRDLTINSLFYNINTKLVEDFTKRGISDLKSGKIVTPLPPKSTFLDDPLRVLRAIR 253
++ +RD T+N L ++ + +V D+ G+ DL++ K+ T +F++D R+LRAIR
Sbjct: 169 KNCLQRDFTVNGLMFDPSENVVYDYIG-GVEDLRNSKVRTVSAANLSFVEDTARILRAIR 227
Query: 254 FCARFDFTL 262
AR F+L
Sbjct: 228 IAARLGFSL 236
>AT1G28090.3 | Symbols: | Polynucleotide adenylyltransferase family
protein | chr1:9796236-9798891 FORWARD LENGTH=478
Length = 478
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 194 EDAYRRDLTINSLFYNINTKLVEDFTKRGISDLKSGKIVTPLPPKSTFLDDPLRVLRAIR 253
++ +RD T+N L ++ + +V D+ G+ DL++ K+ T +F++D R+LRAIR
Sbjct: 142 KNCLQRDFTVNGLMFDPSENVVYDYIG-GVEDLRNSKVRTVSAANLSFVEDTARILRAIR 200
Query: 254 FCARFDFTL 262
AR F+L
Sbjct: 201 IAARLGFSL 209
>AT1G28090.1 | Symbols: | Polynucleotide adenylyltransferase family
protein | chr1:9795826-9798891 FORWARD LENGTH=541
Length = 541
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 194 EDAYRRDLTINSLFYNINTKLVEDFTKRGISDLKSGKIVTPLPPKSTFLDDPLRVLRAIR 253
++ +RD T+N L ++ + +V D+ G+ DL++ K+ T +F++D R+LRAIR
Sbjct: 205 KNCLQRDFTVNGLMFDPSENVVYDYIG-GVEDLRNSKVRTVSAANLSFVEDTARILRAIR 263
Query: 254 FCARFDFTL 262
AR F+L
Sbjct: 264 IAARLGFSL 272