Miyakogusa Predicted Gene

Lj5g3v1869800.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1869800.1 tr|A9S8A5|A9S8A5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_125705,39.84,6e-18,seg,NULL;
Thioredoxin-like,Thioredoxin-like fold;
Thioredoxin_6,NULL,CUFF.56092.1
         (239 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G35620.1 | Symbols: ATPDIL5-2, ATPDI8, PDI8, PDIL5-2 | PDI-li...   248   2e-66

>AT1G35620.1 | Symbols: ATPDIL5-2, ATPDI8, PDI8, PDIL5-2 | PDI-like
           5-2 | chr1:13156504-13158280 FORWARD LENGTH=440
          Length = 440

 Score =  248 bits (634), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/244 (52%), Positives = 173/244 (70%), Gaps = 7/244 (2%)

Query: 1   MVLYDFDKIPALVSLNPQFNERSTFYGPYEENFLEDFVKQNLIPLVVPVSYDTLKLMKAD 60
           MV YDFDK PALV+ +P +NE S FYGP+E+ FLE+FVKQ+ +PL++P+++DTLKL+K D
Sbjct: 199 MVSYDFDKAPALVANHPTYNEHSVFYGPFEDGFLEEFVKQSFLPLILPINHDTLKLLKDD 258

Query: 61  GRKIVLTIVEDENEENSKELIKLLKGAASANRDLIFGYVGVKQMDEFADKF--DTSTKLP 118
            RKIVLTIVEDE  E+ ++L K L+ AA ANRDL+FGYVGVKQ +EF D F  D  T LP
Sbjct: 259 ERKIVLTIVEDETHESLEKLYKALRAAAHANRDLVFGYVGVKQFEEFVDSFHVDKKTNLP 318

Query: 119 KMVIWDKSDDYLSVVGSESI-EGEDQGTQITKFLEGYREGRTVQKRLSGPSLMQFIHRSF 177
           K+V+WD  ++Y  V G E+I + ED  TQ+++FLEGYREGRT +K+++GPS M FI+   
Sbjct: 319 KIVVWDGDEEYDQVTGIETITQEEDHLTQVSRFLEGYREGRTEKKKINGPSFMGFINSMI 378

Query: 178 DIRMVYMIVFMVAVFILIQTLGGKGGDEHHRVPN--QEQVDHAXXXXXXXXXXXXYKPGD 235
            IR VY++VF+VAV +++++LG        R     +E+VD A            +KP D
Sbjct: 379 GIRSVYILVFLVAVIMMLRSLGQVEEPTGVRTATAVRERVDQA--TTVPEDESSEHKPSD 436

Query: 236 KKED 239
           KKED
Sbjct: 437 KKED 440