Miyakogusa Predicted Gene

Lj5g3v1868770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1868770.1 Non Chatacterized Hit- tr|B9R6W1|B9R6W1_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,30.43,0.03,seg,NULL; DUF688,Protein of unknown function
DUF688,CUFF.56085.1
         (209 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71970.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    97   1e-20
AT1G22680.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    79   2e-15

>AT1G71970.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT1G22680.1); Has 58 Blast
           hits to 58 proteins in 13 species: Archae - 0; Bacteria
           - 0; Metazoa - 4; Fungi - 0; Plants - 49; Viruses - 0;
           Other Eukaryotes - 5 (source: NCBI BLink). |
           chr1:27093099-27093776 FORWARD LENGTH=225
          Length = 225

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 90/176 (51%), Gaps = 21/176 (11%)

Query: 52  IYFNEDPLLSPASPLIRLSGVPFSWEHLPGIPXXXXXXXXXXXXXXXXXXXXXXXXSQHS 111
           ++  + PL SPA+PL RL GVPFSWE LPG P                         ++ 
Sbjct: 48  VFPGDSPLNSPATPL-RLLGVPFSWEQLPGKPKDYSHRLNNRRNNESSNLLLPLPPHRNI 106

Query: 112 SKRTTHEETWKKNSTKS----VFQRDPFFAAMVECSKDDDDQEEITS------------- 154
           S   T ++    NS+K     V  +DPF AA++ECSKD+    +                
Sbjct: 107 SFPATGKKPKPNNSSKKNSFPVTGKDPFAAALLECSKDEGTNSDNDDDVDGVEDVDRRFR 166

Query: 155 GNLWNGAKV--SRSVSDRFGFFSLYGSCKRTCAVSESLVFLPSSRR-STYQHVTRR 207
           GN    +KV    S+ DRFG  +LYGSC+RTCAV+ES+V+LP +R+ ++Y ++  R
Sbjct: 167 GNSGGSSKVLSKNSIGDRFGLVNLYGSCRRTCAVTESIVYLPRARKAASYDNLLPR 222


>AT1G22680.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           CONTAINS InterPro DOMAIN/s: Protein of unknown function
           DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G71970.1);
           Has 44 Blast hits to 44 proteins in 8 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:8025503-8026060 REVERSE LENGTH=185
          Length = 185

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 69/144 (47%), Gaps = 14/144 (9%)

Query: 61  SPASPLIRLSGVPFSWEHLPGIPXXXXXXXXXXXXXXXXXXXXXXXXSQHSSKRTTHEET 120
           SPA+PL  L G+PFSWE LPG P                        S HS        T
Sbjct: 46  SPATPLHPL-GIPFSWEKLPGKPKEFSYHRKNESLSNLLPLPPHW--SNHS------PNT 96

Query: 121 WKKNSTKSVFQRDPFFAAMVECSKDDDDQEEITSGNLWNGAKVSRSVSDRFGFFSLYGSC 180
             K +T     RDPF AA+VECSK      E T G      + SRS+    G  +LY SC
Sbjct: 97  RCKKNTSPAAMRDPFMAALVECSKGATTDGEHTGGESRKVLRKSRSI----GLLNLYSSC 152

Query: 181 KRTCAVSESLVFLPSSRRSTYQHV 204
           +R C VSES+V+LP S  ++Y H+
Sbjct: 153 RRACEVSESIVYLPKS-IASYDHL 175