Miyakogusa Predicted Gene

Lj5g3v1864570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1864570.1 Non Chatacterized Hit- tr|B9RNB4|B9RNB4_RICCO
Transcription factor, putative OS=Ricinus communis
GN=,60,1e-16,seg,NULL; HLH,Helix-loop-helix domain,CUFF.56076.1
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47270.1 | Symbols: UPB1 | sequence-specific DNA binding tran...    75   1e-14
AT3G58850.1 | Symbols: PAR2, HLH2 | phy rapidly regulated 2 | ch...    47   2e-06
AT2G42870.1 | Symbols: PAR1, HLH1 | phy rapidly regulated 1 | ch...    47   3e-06

>AT2G47270.1 | Symbols: UPB1 | sequence-specific DNA binding
           transcription factors;transcription regulators |
           chr2:19411741-19412049 REVERSE LENGTH=102
          Length = 102

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 59  GNRRGTVAIQKRVRTLKRLVPNSD-SMGLDGLFRETADYILALQTRVRVMQVMVDVLTGY 117
            +RR   AI +RV+TLK LVPN+  S GLDGLFR+TADYILAL+ +V+VMQ MV VLT  
Sbjct: 40  ASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADYILALEMKVKVMQTMVQVLTET 99

Query: 118 D 118
           +
Sbjct: 100 N 100


>AT3G58850.1 | Symbols: PAR2, HLH2 | phy rapidly regulated 2 |
           chr3:21759562-21759918 REVERSE LENGTH=118
          Length = 118

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 70  RVRTLKRLVPNSDSMGLDGLFRETADYILALQTRVRVMQVMVDVL 114
           ++  L+ +VP    +G+D LF ETA YILALQ ++  ++V+   L
Sbjct: 62  KIEALQTIVPGGTELGVDALFEETASYILALQCQINAIKVLTTFL 106


>AT2G42870.1 | Symbols: PAR1, HLH1 | phy rapidly regulated 1 |
           chr2:17836831-17837187 REVERSE LENGTH=118
          Length = 118

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 31/45 (68%)

Query: 74  LKRLVPNSDSMGLDGLFRETADYILALQTRVRVMQVMVDVLTGYD 118
           L+R++P   ++G+D LF ETA YIL+LQ +++ ++V+   L   D
Sbjct: 66  LQRIIPGGAALGVDALFEETAGYILSLQCQIKTIKVLTSFLQRID 110