Miyakogusa Predicted Gene

Lj5g3v1864530.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1864530.1 Non Chatacterized Hit- tr|B9RZ99|B9RZ99_RICCO 50S
ribosomal protein L21, mitochondrial, putative OS=,44.93,2e-18,50S
RIBOSOMAL PROTEIN L21,Ribosomal protein L21; seg,NULL;
Ribosomal_L21,Ribosomal protein L21; Ribo,CUFF.56086.1
         (213 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G35680.1 | Symbols:  | Ribosomal protein L21 | chr1:13208777-...   125   2e-29
AT4G30930.1 | Symbols: NFD1 | Ribosomal protein L21 | chr4:15050...    82   3e-16

>AT1G35680.1 | Symbols:  | Ribosomal protein L21 |
           chr1:13208777-13210246 FORWARD LENGTH=220
          Length = 220

 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 110/221 (49%), Gaps = 29/221 (13%)

Query: 1   MASATAIVSTLCASFGTHCTITST----------------SKPLFSQTSHSRFPTHSNKL 44
           MAS++A +S LC++F  HC + S                 +KPL    S S   T     
Sbjct: 1   MASSSATLS-LCSTFSAHCNVNSRRSSTILCSLSKPSLNLAKPLTGFLSPSTASTSRTAF 59

Query: 45  SLQXXXXXXXXXXXXXXKVSESAVAELETDVTTPQPEAGEIVPAQPPSWEPGLFAVVMVG 104
           ++                  E+ V    ++VT  + +  EI            FAV+MVG
Sbjct: 60  TVAPKFAESVVEAEPETTDIEAVVVSDVSEVTEEKAKREEI------------FAVIMVG 107

Query: 105 GRQYIVHPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKPIVSNAVVYATVEEQG 164
           GRQYIV PGR++  QRLK A  +D+I L KVLLVGT T  YIGKP+V+NA V+A VE QG
Sbjct: 108 GRQYIVFPGRYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQG 167

Query: 165 FDPKVIVFXXXXXXXXXXXXXXXQPHTRLRINSIMGYENYP 205
            + KV+VF               QP+TR+RI  I GYE YP
Sbjct: 168 LNDKVVVFKYKPKKKYRRNIGHRQPNTRIRITGITGYEEYP 208


>AT4G30930.1 | Symbols: NFD1 | Ribosomal protein L21 |
           chr4:15050170-15051630 REVERSE LENGTH=270
          Length = 270

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 64/116 (55%), Gaps = 2/116 (1%)

Query: 93  WEPGLFAVVMVGGRQYIVHPGRWIVVQRLKGAKANDKIALQKVLLVGTDTSCYIGKPIVS 152
           +EP +FA+V +G  Q+ V  G  I  ++LK    NDK+ L KVLL+G+ +   IG+PI+ 
Sbjct: 137 YEP-VFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILP 195

Query: 153 NAVVYATVEEQGFDPKVIVFXXXXXXXXXXXXXXXQPHTRLRINSIMGYEN-YPKV 207
           +A V+A VEE   D KV++F               Q  T+LRI  I G E   PK+
Sbjct: 196 DATVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIEKPEPKI 251