Miyakogusa Predicted Gene

Lj5g3v1853220.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1853220.1 Non Chatacterized Hit- tr|K3ZH00|K3ZH00_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si025852,39.06,5e-18,SMAD/FHA domain,SMAD/FHA domain; Forkhead
associated domain,Forkhead-associated (FHA) domain;
FHA,Fo,CUFF.56055.1
         (856 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34355.1 | Symbols: ATPS1, PS1 | forkhead-associated (FHA) do...   110   3e-24
AT5G38840.1 | Symbols:  | SMAD/FHA domain-containing protein  | ...    62   3e-09
AT5G47790.1 | Symbols:  | SMAD/FHA domain-containing protein  | ...    53   1e-06

>AT1G34355.1 | Symbols: ATPS1, PS1 | forkhead-associated (FHA)
           domain-containing protein  | chr1:12536497-12541730
           FORWARD LENGTH=1477
          Length = 1477

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 64/84 (76%)

Query: 50  LVLGRHPDCNIVLTHPSISRFHLKILSTPSSRTLSLVDLSSVHGTWVCGRKLEPGESVDL 109
           LV+GRHPDC+I+LTHPSISRFHL+I S  S + L + DLSSVHGTWV   ++EP   V++
Sbjct: 64  LVVGRHPDCDILLTHPSISRFHLEIRSISSRQKLFVTDLSSVHGTWVRDLRIEPHGCVEV 123

Query: 110 KEGDTFTLGISTRLYRLSRVPFVK 133
           +EGDT  +G STR+YRL  +P  +
Sbjct: 124 EEGDTIRIGGSTRIYRLHWIPLSR 147


>AT5G38840.1 | Symbols:  | SMAD/FHA domain-containing protein  |
           chr5:15551329-15554846 FORWARD LENGTH=735
          Length = 735

 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 51  VLGRHPDCNIVLTHPSISRFHLKILSTPSSRTLSLVDLSSVHGTWVCGRKLEPGESVDLK 110
           + GR   C+  L HPSISRFH  ++    S    + DL S HGT V   K++    VDL 
Sbjct: 126 LFGRDGICDFALEHPSISRFHA-VIQYKRSGAAYIFDLGSTHGTTVNKNKVDKKVFVDLN 184

Query: 111 EGDTFTLGISTRLY 124
            GD    G STRLY
Sbjct: 185 VGDVIRFGGSTRLY 198


>AT5G47790.1 | Symbols:  | SMAD/FHA domain-containing protein  |
           chr5:19351396-19352579 FORWARD LENGTH=369
          Length = 369

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 51  VLGR-HPDCNIVLTHPSISRFHLKILSTPSSRTLSLVDLSSVHGTWVCGRKLEPGESVDL 109
           + GR H  C+ VL H S+SR H  ++   +  ++ ++DL S HGT+V   +L     V+L
Sbjct: 88  IFGRQHQTCDFVLDHQSVSRQHAAVVPHKNG-SIFVIDLGSAHGTFVANERLTKDTPVEL 146

Query: 110 KEGDTFTLGISTRLYRLSR 128
           + G +     STR+Y L +
Sbjct: 147 EVGQSLRFAASTRIYLLRK 165