Miyakogusa Predicted Gene
- Lj5g3v1853140.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1853140.1 tr|I2FN51|I2FN51_USTHO Related to
spliceosome-associated protein SAP-49 OS=Ustilago hordei PE=4
SV=1,39.77,0.000000000000001,RNA-binding domain, RBD,NULL; RRM_1,RNA
recognition motif domain; SUBFAMILY NOT NAMED,NULL; FAMILY
N,CUFF.56057.1
(196 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G10110.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 178 2e-45
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 71 4e-13
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 50 1e-06
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 2e-06
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 49 2e-06
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 49 2e-06
>AT4G10110.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:6309606-6310809 REVERSE LENGTH=173
Length = 173
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/177 (56%), Positives = 122/177 (68%), Gaps = 16/177 (9%)
Query: 1 MSDNSGCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEV 60
MS S C+VYIGN+DERV+DRVLYDI+IQAGRV+DLHIP+DKE++KPKGFAFAEYETEE+
Sbjct: 1 MSGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEI 60
Query: 61 ADYAVRLFSGLVTLYNRTLKFAISGKDKTTPNGSTANTPSSNSSQRPRLNPVPIYNSENF 120
ADYAV+LFSGLV+LYNRTLKFAISG+DK N S+NS R R S F
Sbjct: 61 ADYAVKLFSGLVSLYNRTLKFAISGQDKLQSN-------SANSGHRARP------QSLAF 107
Query: 121 QHSARLS--TPERFSDYAVNHSQVPPHRLSGQSSGYGTHYGSNNYEYSRRALGATLD 175
+HS R + ERFS ++ P + + G G+ + EYSRR LG+ LD
Sbjct: 108 EHSDRAAYHHLERFSSQLISPPSPLPLDYTQEPPPPGVSNGA-SLEYSRRVLGSALD 163
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 4 NSGCSVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEVADY 63
N +VY+G LD ++++ +L+++ +QAG VV++++PKD+ + + + F EY +EE ADY
Sbjct: 22 NQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADY 81
Query: 64 AVRLFSGLVTLYNRTLKFAISGKDKTT 90
A+++ + ++ L+ + ++ + +DK +
Sbjct: 82 AIKVLN-MIKLHGKPIRVNKASQDKKS 107
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 9 VYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEVADYAVRLF 68
V++GN+ T+ L +I + G VV + D+E+ KPKG+ F EY+ EE A A R
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 69 SGLVTLYNRTLKFAISGKDKTT 90
+ R L+ + DK T
Sbjct: 71 QSY-EINGRQLRVDFAENDKGT 91
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 9 VYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEVADYAVRLF 68
+Y+ L R T+ L D Q G ++ +++ DK + +PKGFAF YETEE A A++
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 69 SG 70
G
Sbjct: 139 HG 140
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 17/148 (11%)
Query: 8 SVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEVADYAVRL 67
S+Y+G+LD VTD L++ QAG+VV + + +D + + G+ + Y T + A A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 68 FSGLVTLYNRTLKFAISGKDKTTPNGSTANTPSSNSSQRPRLNPVPIYNSENFQHSARLS 127
+ + L R ++ S +D + N N + + H A
Sbjct: 106 LN-FMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDK-------------SIDHKALHE 151
Query: 128 TPERFSDYAVNHSQVPPHRLSGQSSGYG 155
T F V P SGQS GYG
Sbjct: 152 TFSAFGPILSCKVAVDP---SGQSKGYG 176
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 17/148 (11%)
Query: 8 SVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEVADYAVRL 67
S+Y+G+LD VTD L++ QAG+VV + + +D + + G+ + Y T + A A+
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 68 FSGLVTLYNRTLKFAISGKDKTTPNGSTANTPSSNSSQRPRLNPVPIYNSENFQHSARLS 127
+ + L R ++ S +D + N N + + H A
Sbjct: 106 LN-FMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDK-------------SIDHKALHE 151
Query: 128 TPERFSDYAVNHSQVPPHRLSGQSSGYG 155
T F V P SGQS GYG
Sbjct: 152 TFSAFGPILSCKVAVDP---SGQSKGYG 176