Miyakogusa Predicted Gene

Lj5g3v1853110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1853110.1 Non Chatacterized Hit- tr|D8S013|D8S013_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,41.67,0.000000000000001,Glu-tRNAGln amidotransferase C
subunit,NULL; SUBFAMILY NOT NAMED,NULL; FROUNT PROTEIN-RELATED,NULL;
,CUFF.56067.1
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32915.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   120   2e-28

>AT4G32915.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: regulation of translational fidelity;
           LOCATED IN: chloroplast; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C
           subunit (InterPro:IPR003837); Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:15885549-15886628 FORWARD LENGTH=155
          Length = 155

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 79/94 (84%), Gaps = 1/94 (1%)

Query: 47  QPPDLTSLAKKAQISLTPHQVDEFAPKIQQVIEWFGQLQSVDLQSVEPSLRAESE-NNLR 105
           QPPD+  LA+ A+ISLTP +++E   KI++VI+WFGQLQ VD+ SVEP++RAE +  NLR
Sbjct: 62  QPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDVNSVEPAIRAEMDGGNLR 121

Query: 106 ENAPETFDSRDAMIASVPSYEEPYIKVPRVLSMD 139
           E+APETFD+RD++ AS+PS+E+ Y+KVP++L+ +
Sbjct: 122 EDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155