Miyakogusa Predicted Gene

Lj5g3v1849500.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1849500.1 Non Chatacterized Hit- tr|K4CN35|K4CN35_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,59.09,9e-19,coiled-coil,NULL; seg,NULL; Vma12,ATPase, vacuolar
ER assembly factor, Vma12,CUFF.56026.1
         (227 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52980.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: ATPase, va...   201   3e-52

>AT5G52980.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: ATPase,
           vacuolar ER assembly factor, Vma12 (InterPro:IPR021013);
           Has 1807 Blast hits to 1807 proteins in 277 species:
           Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
           Plants - 385; Viruses - 0; Other Eukaryotes - 339
           (source: NCBI BLink). | chr5:21482329-21483642 REVERSE
           LENGTH=222
          Length = 222

 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/201 (52%), Positives = 127/201 (63%)

Query: 22  GLIISITDSIRTFLTGASNNPTXXXXXXXXXXXXXXXXXVPYAPLRAVWIASDPSTRPEL 81
           GLI+S T+ +R+FL  AS +                   +PY  LRA+W  SDPSTRP+L
Sbjct: 11  GLILSATEPLRSFLALASGDRRLSDELRGIASDLRSKNTIPYKLLRAIWTGSDPSTRPDL 70

Query: 82  TRLFSGTRFVFSSPKPXXXXXXXXXXXXXXXXXXXXXAYQELVKDIAPKQDVVEPFSSYK 141
             LFSG+ FVF+SPKP                      Y ELVKDI PK+ V EPFSSYK
Sbjct: 71  LGLFSGSNFVFTSPKPREKSEELKLRLVKLREIAERKEYAELVKDITPKKQVEEPFSSYK 130

Query: 142 DQLGFGLHVLVTMFTGYLVGYAAFRALFNHGPAMNAAGGILGLVGAMLVETFLFIIRSSN 201
           DQLGFGLHV +TMFTGYLVGYA+FRALFN  PA++AAGGILGLV AMLVET LFII++S 
Sbjct: 131 DQLGFGLHVGLTMFTGYLVGYASFRALFNRNPALSAAGGILGLVLAMLVETLLFIIKTSK 190

Query: 202 LDDSKTRKSNKKPRSPFSTSS 222
            D  ++ KS  +    F+ SS
Sbjct: 191 DDQIQSSKSFTQSSPSFTQSS 211