Miyakogusa Predicted Gene

Lj5g3v1839400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1839400.1 tr|G7I9K5|G7I9K5_MEDTR Nuclear receptor
corepressor OS=Medicago truncatula GN=MTR_1g095570 PE=4
SV=1,69.98,0,Homeodomain-like,Homeodomain-like; SANT  SWI3, ADA2,
N-CoR and TFIIIB'' DNA-bin,SANT/Myb domain; coi,CUFF.56023.1
         (1406 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52250.1 | Symbols:  | Duplicated homeodomain-like superfamil...   523   e-148

>AT3G52250.1 | Symbols:  | Duplicated homeodomain-like superfamily
            protein | chr3:19376629-19383100 FORWARD LENGTH=1656
          Length = 1656

 Score =  523 bits (1347), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 382/1048 (36%), Positives = 551/1048 (52%), Gaps = 100/1048 (9%)

Query: 133  DVNNDQRSVDDTLAHSSHPHSDFANNSWDQHHLKD--QNDKMGGFNGTGTGPRCDRENSL 190
            D+   +R V D    +  P+++    +W+Q  LKD   N+ + G N      +C +E+SL
Sbjct: 233  DLMYGRRLVSDNSLDAPIPNAEL-EGTWEQLRLKDPQDNNSLHGINDIDGDRKCAKESSL 291

Query: 191  GAADWKPLKWTXXXXXXXXXXXXXHTSSSRSMGGADSYEVKAELQPKNATASKSHSGEAA 250
            GA    PL W              H+SS +S+G  DS + K E+ PK  T ++S SG+A 
Sbjct: 292  GATGKLPL-WNSSGSFASQSSGFSHSSSLKSLGAVDSSDRKIEVLPKIVTVTQSSSGDA- 349

Query: 251  TARVTSSAPSEDTTSRKKPRLGWGEGLAKYEKKKVEGPELSVNKDGPVSSTSNMEPCNVF 310
            TA  T++  SE+ +SRKK RLGWGEGLAKYEKKKV+   ++ N+DG     + +E  +  
Sbjct: 350  TACATTTHLSEEMSSRKKQRLGWGEGLAKYEKKKVD---VNPNEDGTTLMENGLEELHSL 406

Query: 311  SPNLVDKSPKLTGFSDCASPATPSSVACSSSPGVDDKLFSKSANVDSDFSNLTGSPAPGS 370
            + N+ DKSP      D  SP TPSSVACSSSPG  DK   K+A   SD SN+  SP+P S
Sbjct: 407  NKNIADKSPTAAIVPDYGSPTTPSSVACSSSPGFADKSSPKAAIAASDVSNMCRSPSPVS 466

Query: 371  QNHLQKFSFNLHNLDIYSLNNLGSSIVDLVQSDDPSSVDSGLGRSSAINKLLIWKADISK 430
              HL++F  N+  LD  S+   G  + +L+ +DD  + DS   + +++N LL WK +I K
Sbjct: 467  SIHLERFPINIEELDNISMERFGCLLNELLGTDDSGTGDSSSVQLTSMNTLLAWKGEILK 526

Query: 431  VLEMTETEIDSLENELKSLKSEPGDKCPPAPGSQVVGNNEIFCEDLAGVNKVTRPV---P 487
             +EMTE+EID LEN+ ++LK E G +      S+VVG +   C+  A V K        P
Sbjct: 527  AVEMTESEIDLLENKHRTLKLE-GRR-----HSRVVGPSSYCCDGDANVPKEQASCSLDP 580

Query: 488  LKIVSSDEPDVEKMP-QSNNLHSIHENANEEGIDSPGTA---TSKF--------VEPLPL 535
                SS    + + P     L  +  +  E   DSPG     +  F        + P+P 
Sbjct: 581  KATASSVAKTLVRAPVHQAGLAKVPADVFE---DSPGEVKPLSQSFATVEREEDILPIPS 637

Query: 536  IKAVSSCEARGYDNFSADLNARQSAAVKSLVPCTTRRNASVSACGDSNTSMEVKVXXXXX 595
            +KA  S         S ++N    A  +++          VS+  DS  S E        
Sbjct: 638  MKAAVS---------SKEINTPAFANQETI---------EVSSADDSMASKE-------- 671

Query: 596  XXXXXXXXXEDIYNTIISSNKEIADRAHDAFAKLLPKECCKIDNVGANNGSCTGGL---I 652
                     +  +  ++S+NK+ A  +   F +LLP++    DN     G C       +
Sbjct: 672  ---------DLFWAKLLSANKKYACESSGVFNQLLPRDFNSSDN-SRFPGICQTQFDSHV 721

Query: 653  VEKIAEKKQFARFKERVIALKFKALHHVWKEDMRLLSMKKCRQKSHKKNELSVRTTYNGN 712
             EKIA++    R +E+++ L+FKA    WK+D+  L++ K + KS KK EL       G 
Sbjct: 722  QEKIADRVGLLRAREKILLLQFKAFQLSWKKDLDQLALAKYQSKSSKKTELYPNAKNGGY 781

Query: 713  QKNRSSIRSRFTSPGNHL-SMVPTSEIINFTSTLLSESQVKAQRNALKMPALILDEKEKL 771
             K   S+R RF+S      S+VPT+E++++   LL  + +K  R+ LKMPA+ILDEKE++
Sbjct: 782  LKLPQSVRLRFSSSAPRRDSVVPTTELVSYMEKLLPGTHLKPFRDILKMPAMILDEKERV 841

Query: 772  ISKFISSNGLVEDPLAVEKEKAMINPWTSEEREIFLEKFAALGKDFRKIASFLDHKTTAD 831
            +S+FISSNGL+EDP  VEKE+ MINPWTSEE+EIFL   A  GKDF+KIAS L  KTTAD
Sbjct: 842  MSRFISSNGLIEDPCDVEKERTMINPWTSEEKEIFLNLLAMHGKDFKKIASSLTQKTTAD 901

Query: 832  CVEFYYKNHKSDCFVXXXXXXXXXXXXSFSAKTSLVASGKKWNREVNAASLEILSAASVM 891
            C+++YYKNHKSDCF                  T ++A  KKW RE+ AASL+IL   S++
Sbjct: 902  CIDYYYKNHKSDCFGKIKKQRAYGKE---GKHTYMLAPRKKWKREMGAASLDILGDVSII 958

Query: 892  ADG---MSGNKKMRSRSFLLGGYGNVKKSKGEXXXXXXXXXXXXHGDERETAAAADVLAG 948
            A     ++  + + S+   L G  +    + +                R+  A ADVLA 
Sbjct: 959  AANAGKVASTRPISSKKITLRGCSSANSLQHDGNNSEGCSYSFDF--PRKRTAGADVLA- 1015

Query: 949  ICGSLSSEAMSSCITSSVDPVDGNTDRKFLKANPLCRKPLTPDVTQ------------NV 996
              G LS E ++SC+ +SV   +   D   LK N + +KP                   N 
Sbjct: 1016 -VGPLSPEQINSCLRTSVSSRERCMDH--LKFNHVVKKPRISHTLHNENSNTLHNENSNE 1072

Query: 997  EDETCSDQSSDEMDLSDWTDDEKAALLQAVSSFGKDFAKIARCVGTKSQEQCKVFFTKAR 1056
            ED++CS++S  E     WTDDE++A +Q  S FGK+FA I+R VGT+S +QCKVFF+K R
Sbjct: 1073 EDDSCSEESCGETGPIHWTDDERSAFIQGFSLFGKNFASISRYVGTRSPDQCKVFFSKVR 1132

Query: 1057 KCLRLDLMHPIPGN-GRSLGNDDAN-GGGSDTDDACVVETGSAVGTDKSGTKTDEDLPS- 1113
            KCL L+ +    GN   S+  D+ N GGGSD +D C +E+ S +  +    K   + P+ 
Sbjct: 1133 KCLGLESIKFGSGNVSTSVSVDNGNEGGGSDLEDPCPMESNSGIVNNGVCAKMGMNSPTS 1192

Query: 1114 -MNAFHDESNPVEPRNLSAELNESKENN 1140
              N   D  N     N+ A+L+ S+E N
Sbjct: 1193 PFNMNQDGVNQSGSANVKADLSRSEEEN 1220



 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/164 (43%), Positives = 92/164 (56%), Gaps = 9/164 (5%)

Query: 1   MPPEPLPWDRKDFFKERKHERSESV--GSVARWRDS--SHH--RDFH-RWGSAEFRRPPG 53
           MP +   WDRK+  ++RKH+R E        RWRDS  SHH  R+F  R GS +FRRP  
Sbjct: 1   MPQDHASWDRKELLRQRKHDRPEQSFESPPFRWRDSPSSHHVPREFSSRLGSGDFRRPSC 60

Query: 54  HGKQGGWHLFSEESGHGYAGSRSGDKMVEEDSRPSISRGDGKYXXXXXXXXXXXXXXXDW 113
           HGKQGG H F EE+ HGY  SRS  +M  ++ RPS SRGD +Y               +W
Sbjct: 61  HGKQGGRHQFVEETSHGYTSSRSSARMF-DNYRPSASRGDWRY-TRNCRDDRVSVSQKEW 118

Query: 114 RGHSWENSNGSQNFSRRPPDVNNDQRSVDDTLAHSSHPHSDFAN 157
           + ++WE SNGS     RP  + N +RSVD+   H+S  HS   N
Sbjct: 119 KCNTWEMSNGSSRSFERPFGIRNGRRSVDERPLHASDTHSTVVN 162