Miyakogusa Predicted Gene

Lj5g3v1815200.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1815200.1 tr|I3SFN4|I3SFN4_LOTJA Chorismate synthase
OS=Lotus japonicus PE=2 SV=1,97.92,0,Chorismate_synt,Chorismate
synthase; CHORISMATE_SYNTHASE_3,Chorismate synthase, conserved site;
CHOR,CUFF.56013.1
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48850.1 | Symbols: EMB1144 | chorismate synthase, putative /...   329   9e-91
AT1G48850.2 | Symbols: EMB1144 | chorismate synthase, putative /...   215   2e-56
AT1G48850.3 | Symbols: EMB1144 | chorismate synthase, putative /...   213   5e-56

>AT1G48850.1 | Symbols: EMB1144 | chorismate synthase, putative /
           5-enolpyruvylshikimate-3-phosphate phospholyase,
           putative | chr1:18065154-18067956 REVERSE LENGTH=436
          Length = 436

 Score =  329 bits (843), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 156/190 (82%), Positives = 176/190 (92%), Gaps = 1/190 (0%)

Query: 1   MISAIDAIRVRGDSVGGVVTCIVRNCPRGFGSPVFDKLEAELAKAVMSLPATKGFQFGSG 60
           MI+AIDA+R +G+SVGGVVTCIVRN PRG G+PVFDKLEAELAKA MSLPATKGF+FGSG
Sbjct: 245 MIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSG 304

Query: 61  FAGTFLTGSEHNDEFYIDEHGKMRTRTNRSGGIQGGISNGEIINMRIAFKPTATIGKKQL 120
           FAGTFLTG EHNDEFY DE+G++RTRTNRSGGIQGGISNGEIINMR+AFKPT+TIG+KQ 
Sbjct: 305 FAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGRKQN 364

Query: 121 TVTREKKETELITRGRHDPCVVPRAVPMVEAVVALVLVDQLMAQHAQCNLFPINSELQDP 180
           TVTR+K ETE+I RGRHDPCVVPRAVPMVEA+VALVLVDQLMAQ+AQC+LFPIN ELQ+P
Sbjct: 365 TVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCHLFPINPELQEP 424

Query: 181 LSSIFEPEEA 190
           L  I +P+ A
Sbjct: 425 L-QIEQPQNA 433


>AT1G48850.2 | Symbols: EMB1144 | chorismate synthase, putative /
           5-enolpyruvylshikimate-3-phosphate phospholyase,
           putative | chr1:18065399-18067956 REVERSE LENGTH=380
          Length = 380

 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/127 (78%), Positives = 115/127 (90%)

Query: 1   MISAIDAIRVRGDSVGGVVTCIVRNCPRGFGSPVFDKLEAELAKAVMSLPATKGFQFGSG 60
           MI+AIDA+R +G+SVGGVVTCIVRN PRG G+PVFDKLEAELAKA MSLPATKGF+FGSG
Sbjct: 245 MIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSG 304

Query: 61  FAGTFLTGSEHNDEFYIDEHGKMRTRTNRSGGIQGGISNGEIINMRIAFKPTATIGKKQL 120
           FAGTFLTG EHNDEFY DE+G++RTRTNRSGGIQGGISNGEIINMR+AFKPT+TIG+ + 
Sbjct: 305 FAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGEAKY 364

Query: 121 TVTREKK 127
              R+ +
Sbjct: 365 GNQRQGR 371


>AT1G48850.3 | Symbols: EMB1144 | chorismate synthase, putative /
           5-enolpyruvylshikimate-3-phosphate phospholyase,
           putative | chr1:18065399-18067956 REVERSE LENGTH=380
          Length = 380

 Score =  213 bits (543), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 100/127 (78%), Positives = 114/127 (89%)

Query: 1   MISAIDAIRVRGDSVGGVVTCIVRNCPRGFGSPVFDKLEAELAKAVMSLPATKGFQFGSG 60
           MI+AIDA+R +G+SVGGVVTCIVRN PRG G+PVFDKLEAELAKA MSLPATKGF+FGSG
Sbjct: 245 MIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSG 304

Query: 61  FAGTFLTGSEHNDEFYIDEHGKMRTRTNRSGGIQGGISNGEIINMRIAFKPTATIGKKQL 120
           FAGTFLTG EHNDEFY DE+G++RTRTNRSGGIQGGISNGEIINMR+AFKPT+TIG  + 
Sbjct: 305 FAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGVTKY 364

Query: 121 TVTREKK 127
              R+ +
Sbjct: 365 GNQRQGR 371