Miyakogusa Predicted Gene

Lj5g3v1811650.4

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1811650.4 tr|G7I373|G7I373_MEDTR
Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit
OS=Medi,85.06,0,SUBFAMILY NOT NAMED,NULL; RIBOPHORIN I,Ribophorin I;
seg,NULL; Ribophorin_I,Ribophorin I,CUFF.56039.4
         (337 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01720.1 | Symbols:  | Ribophorin I | chr2:317193-320016 REVE...   452   e-127
AT1G76400.1 | Symbols:  | Ribophorin I | chr1:28658713-28661672 ...   304   7e-83

>AT2G01720.1 | Symbols:  | Ribophorin I | chr2:317193-320016 REVERSE
           LENGTH=464
          Length = 464

 Score =  452 bits (1162), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/314 (69%), Positives = 258/314 (82%)

Query: 24  SSSQDVHIVNAERRIDLTSHIVKVYLTLKVENLGTSPVSEVHLAFSPTESEHLAIVKAAA 83
           SS+QD+ IVNAERRIDL+SHIVK +LTLKVEN+G  P +E+ LAF PT+ ++LA+V+A A
Sbjct: 22  SSAQDLQIVNAERRIDLSSHIVKAFLTLKVENIGKDPAAEMLLAFPPTQIKNLAMVQALA 81

Query: 84  TSGKRKKKTYVPLDVKSAELPDGPNGTKFFSIALLTPLSKGETTTLEVLYRLTHSLEPFP 143
           T+GK+KKKTY+PLDVK  E PD PN T ++ +  ++PL  GET +LEVLY LTHSLEPFP
Sbjct: 82  TTGKKKKKTYLPLDVKPTEQPDAPNDTGYYRVTFISPLGPGETVSLEVLYILTHSLEPFP 141

Query: 144 VEISQSESQLVYFRDSAILLSPYHVKQQTTFIKTPSTRVESFTVVEPTKRAGTELKYGXX 203
           VEI+QSESQLVY+ DSA++LSPYHVKQQTTFIKTPSTRVESFT +EP  RAG E+KYG  
Sbjct: 142 VEITQSESQLVYYHDSAVILSPYHVKQQTTFIKTPSTRVESFTSIEPANRAGKEIKYGPY 201

Query: 204 XXXXXXXXXXVLVHFENNNPFAVVEELEREIEISHWGSVQVTERYRLVHAGARHKGVFSR 263
                     V++HFENN+PFAVVEEL REIEISHWGS+Q+TE YRL H GARHKGVFSR
Sbjct: 202 ENRASYSYTPVIIHFENNSPFAVVEELVREIEISHWGSLQITENYRLTHGGARHKGVFSR 261

Query: 264 VEYQTRSGGSGVSSFKNLLLKLPPRVHSVYYRDEIGNISSSHLRTDFLKSELEIEPRYPL 323
           V+YQ++   SG SSF  LL  LPPRV+SVYYRDEIGNIS+SHLRT F KSELE EPRYPL
Sbjct: 262 VDYQSKRSVSGASSFNALLAVLPPRVNSVYYRDEIGNISTSHLRTGFRKSELEFEPRYPL 321

Query: 324 FGGWKSTFVIGYGV 337
           FGGW +TF+IGY V
Sbjct: 322 FGGWSATFIIGYRV 335


>AT1G76400.1 | Symbols:  | Ribophorin I | chr1:28658713-28661672
           REVERSE LENGTH=614
          Length = 614

 Score =  304 bits (778), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 156/311 (50%), Positives = 209/311 (67%), Gaps = 1/311 (0%)

Query: 28  DVHIVNAERRIDLTSHIVKVYLTLKVENLGTSPVSEVHLAFSPTESEHLAIVKAAATSGK 87
           D+ +   ERRID+TS I +V  TLKV N G+  VSE  L F      +LA +  A + GK
Sbjct: 26  DLVLSKVERRIDVTSQIARVTKTLKVVNSGSESVSEFALTFPKFLGNNLAYLSVAPSEGK 85

Query: 88  RK-KKTYVPLDVKSAELPDGPNGTKFFSIALLTPLSKGETTTLEVLYRLTHSLEPFPVEI 146
            K K+T V L V+ A+    P+    +S+AL  PLSKG+T TLEV+   T+ L+PFP +I
Sbjct: 86  GKSKRTLVNLSVREADQKGLPDSISVYSVALPKPLSKGDTLTLEVVAAFTNVLQPFPEKI 145

Query: 147 SQSESQLVYFRDSAILLSPYHVKQQTTFIKTPSTRVESFTVVEPTKRAGTELKYGXXXXX 206
           +Q E  LV  ++SA  LSPY V+ Q+  IK P+ R+ES+T  E TK  G+ELKYG     
Sbjct: 146 TQGEIHLVMLQESAQYLSPYAVESQSLSIKLPNARIESYTKFENTKLQGSELKYGPYKNL 205

Query: 207 XXXXXXXVLVHFENNNPFAVVEELEREIEISHWGSVQVTERYRLVHAGARHKGVFSRVEY 266
                  ++VHFE+   FAV E+L REIE+SHWG+VQVTE Y +VH GA+ KG FSR+++
Sbjct: 206 QSYSYSPIVVHFESKAAFAVAEKLVREIEVSHWGNVQVTENYNVVHRGAQLKGEFSRLDF 265

Query: 267 QTRSGGSGVSSFKNLLLKLPPRVHSVYYRDEIGNISSSHLRTDFLKSELEIEPRYPLFGG 326
           Q R    G S+F++LL +LPPR HS+YYRD+IGNIS+S +++D  K+EL IEPR+PLFGG
Sbjct: 266 QARPNPRGASAFRHLLARLPPRAHSIYYRDDIGNISTSEMKSDSKKTELLIEPRFPLFGG 325

Query: 327 WKSTFVIGYGV 337
           WK+ F IGYG+
Sbjct: 326 WKTFFTIGYGL 336