Miyakogusa Predicted Gene

Lj5g3v1811630.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1811630.1 tr|G7JB99|G7JB99_MEDTR ATP-dependent DNA helicase
PIF1 OS=Medicago truncatula GN=MTR_3g070660 PE=4
S,61.54,0.0004,PIF1,DNA helicase PIF1, ATP-dependent;
Herpes_Helicase,DNA helicase; UNCHARACTERIZED,NULL; P-loop
co,CUFF.55993.1
         (219 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28780.1 | Symbols:  | PIF1 helicase | chr5:10812907-10814173...   200   7e-52
AT3G51690.1 | Symbols:  | PIF1 helicase | chr3:19176731-19178107...   190   8e-49
AT3G51700.1 | Symbols:  | PIF1 helicase | chr3:19179443-19181145...   172   2e-43

>AT5G28780.1 | Symbols:  | PIF1 helicase | chr5:10812907-10814173
           REVERSE LENGTH=337
          Length = 337

 Score =  200 bits (508), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 101/218 (46%), Positives = 140/218 (64%), Gaps = 2/218 (0%)

Query: 1   MADRAILAPTNEIVDSLNEYMMSLLPGDEKTYLSADNTCSSDINYDSQDDIHTPEFLNTI 60
           + +R IL P NE VD +N YM+S + GD K YLS+ +   +D      + ++  ++LN++
Sbjct: 115 LTERGILTPHNEYVDEINAYMLSQVGGDSKEYLSSYSIGKADTIGADYEALYHVKYLNSL 174

Query: 61  NFSGLPNHLLKLKKGAPVMLLRNIDQSAGLCNGTRLIITEMGKYVLEGKVISGTNAGKRV 120
            F  LP H + LKKG P+M +RN +Q  GLCNGTRLI+T +G+ V+E ++++GT+AGK V
Sbjct: 175 EFPSLPKHKISLKKGVPIMQMRNFNQKEGLCNGTRLIVTNLGEQVIEAQIVTGTHAGKMV 234

Query: 121 VIPRLTLTPSDRRIPFKFQRRQFPIALSFAMTINKSQGQSLKSVGLSLPKPVFSHGQLYV 180
            IPR  L+P     PF  +R+QFP+ + +AMTI K+QGQSLKS  L LP PVFSH QLYV
Sbjct: 235 SIPRFILSPPQSEHPFTLRRQQFPMRVCYAMTIIKNQGQSLKSDVLYLPNPVFSHVQLYV 294

Query: 181 AFSRVTHRKGLKILICXXXXXXXXXXXXVVYKEVFRNV 218
           A SRVT   GL IL              +VYKE + ++
Sbjct: 295 ALSRVTSPIGLTIL--HGDDQKNDEVKNIVYKEFYNDL 330


>AT3G51690.1 | Symbols:  | PIF1 helicase | chr3:19176731-19178107
           REVERSE LENGTH=331
          Length = 331

 Score =  190 bits (482), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 100/218 (45%), Positives = 140/218 (64%), Gaps = 7/218 (3%)

Query: 3   DRAILAPTNEIVDSLNEYMMSLLPGDEKTYLSADNTCSSDINYDSQDDIHTP-EFLNTIN 61
           D AIL   ++ VD +N+YM+SLLPG+EK  LS D+   S       DD+  P E LN+I 
Sbjct: 119 DSAILCHRDDDVDQINDYMLSLLPGEEKECLSTDSISPS-----PNDDMFVPLEVLNSIK 173

Query: 62  FSGLPNHLLKLKKGAPVMLLRNIDQSAGLCNGTRLIITEMGKYVLEGKVISGTNAGKRVV 121
             GLP+  L+LK GAPVMLLR++D S G   GTRL IT +  ++LE  +I+G   GK++ 
Sbjct: 174 VPGLPDFKLRLKVGAPVMLLRDLDPSRGFFTGTRLQITRLCGFLLEAMIIAGNKHGKKIW 233

Query: 122 IPRLTLTPSDRRIPFKFQRRQFPIALSFAMTINKSQGQSLKSVGLSLPKPVFSHG-QLYV 180
           IPR+   P++   P + +R Q+P+ L+FAMTI++SQ  +L  VGL LP+ VFSHG Q++V
Sbjct: 234 IPRIASYPTETNFPLQMRRTQYPLKLAFAMTIDESQVHTLSKVGLYLPRQVFSHGRQMFV 293

Query: 181 AFSRVTHRKGLKILICXXXXXXXXXXXXVVYKEVFRNV 218
           A S+V  R GLK+LI             VV+KE+F+N+
Sbjct: 294 AISKVKSRAGLKVLITDKDGNPQEEAKNVVFKELFQNI 331


>AT3G51700.1 | Symbols:  | PIF1 helicase | chr3:19179443-19181145
           REVERSE LENGTH=344
          Length = 344

 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/216 (43%), Positives = 134/216 (62%), Gaps = 6/216 (2%)

Query: 3   DRAILAPTNEIVDSLNEYMMSLLPGDEKTYLSADNTCSSDINYDSQDD--IHTPEFLNTI 60
           +RAIL  TN++ D +N+YM+S L G+E     AD    +   + S +D  ++  EFLN+I
Sbjct: 120 ERAILCHTNDVADEINDYMLSQLQGEETKCYGADTIYPT---HASPNDKMLYPLEFLNSI 176

Query: 61  NFSGLPNHLLKLKKGAPVMLLRNIDQSAGLCNGTRLIITEMGKYVLEGKVISGTNAGKRV 120
              G P+  L+LK GAPVMLLR++     L  GTRL IT +  +VLE  +I+G N G++V
Sbjct: 177 KIPGFPDFKLRLKVGAPVMLLRDLAPYGWLRKGTRLQITRVETFVLEAMIITGNNHGEKV 236

Query: 121 VIPRLTLTPSDRRIPFKFQRRQFPIALSFAMTINKSQGQSLKSVGLSLPKPVFSHGQLYV 180
           +IPR+     + + P K +RRQFP+ L+FAMTI++SQ Q+L  VG+ LP+ +  HGQ YV
Sbjct: 237 LIPRIPSDLREAKFPIKMRRRQFPVKLAFAMTIDESQRQTLSKVGIYLPRQLLFHGQRYV 296

Query: 181 AFSRVTHRKGLKILICXXXXX-XXXXXXXVVYKEVF 215
           A S+V  R GLK+LI              VV+KE+F
Sbjct: 297 AISKVKSRAGLKVLITDKDGKPDQEETKNVVFKELF 332