Miyakogusa Predicted Gene

Lj5g3v1811580.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1811580.1 tr|G7I519|G7I519_MEDTR Inter-alpha-trypsin
inhibitor heavy chain H3 OS=Medicago truncatula
GN=MTR_1g,75.36,8e-19,seg,NULL,101833_g.1
         (69 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60710.1 | Symbols:  | Zinc finger (C3HC4-type RING finger) f...    61   1e-10
AT2G38970.1 | Symbols:  | Zinc finger (C3HC4-type RING finger) f...    56   4e-09
AT3G54780.1 | Symbols:  | Zinc finger (C3HC4-type RING finger) f...    55   7e-09
AT3G54780.3 | Symbols:  | Zinc finger (C3HC4-type RING finger) f...    55   7e-09
AT3G54780.2 | Symbols:  | Zinc finger (C3HC4-type RING finger) f...    55   7e-09

>AT5G60710.1 | Symbols:  | Zinc finger (C3HC4-type RING finger)
          family protein | chr5:24410953-24414849 REVERSE
          LENGTH=704
          Length = 704

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 43/58 (74%), Gaps = 2/58 (3%)

Query: 1  MGSKWKKAKVALGLNLCMFVPRTLDDESPPPSTVVSERLSDASLLSSRQTTPVQSFNG 58
          MGSKW+KAKVALGLNLC++VP+TL+D SPP  +   + +S + ++  R +TP  S +G
Sbjct: 1  MGSKWRKAKVALGLNLCLYVPKTLEDSSPPRRS--DDAVSLSPVIVQRPSTPTPSSSG 56


>AT2G38970.1 | Symbols:  | Zinc finger (C3HC4-type RING finger)
          family protein | chr2:16274135-16276651 FORWARD
          LENGTH=692
          Length = 692

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%), Gaps = 2/46 (4%)

Query: 1  MGSKWKKAKVALGLNLCMFVPRTLDDESPPPSTVVSERLSDASLLS 46
          MG++W++ K+ALGLNLC ++PRTL +ESP P    +ERLSD +LLS
Sbjct: 1  MGTRWRRMKLALGLNLCTYLPRTL-EESPTPLN-STERLSDVALLS 44


>AT3G54780.1 | Symbols:  | Zinc finger (C3HC4-type RING finger)
          family protein | chr3:20278985-20281429 FORWARD
          LENGTH=675
          Length = 675

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 1  MGSKWKKAKVALGLNLCMFVPRTLDDESPPPSTVVSERLSDASLLS 46
          M SKWKK K+AL LNLC ++PRTL++E P  +   +E LSDA+LLS
Sbjct: 1  MVSKWKKMKLALSLNLCNYLPRTLEEEPPSLALNSAETLSDAALLS 46


>AT3G54780.3 | Symbols:  | Zinc finger (C3HC4-type RING finger)
          family protein | chr3:20278985-20281429 FORWARD
          LENGTH=633
          Length = 633

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 1  MGSKWKKAKVALGLNLCMFVPRTLDDESPPPSTVVSERLSDASLLS 46
          M SKWKK K+AL LNLC ++PRTL++E P  +   +E LSDA+LLS
Sbjct: 1  MVSKWKKMKLALSLNLCNYLPRTLEEEPPSLALNSAETLSDAALLS 46


>AT3G54780.2 | Symbols:  | Zinc finger (C3HC4-type RING finger)
          family protein | chr3:20278985-20281429 FORWARD
          LENGTH=632
          Length = 632

 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 1  MGSKWKKAKVALGLNLCMFVPRTLDDESPPPSTVVSERLSDASLLS 46
          M SKWKK K+AL LNLC ++PRTL++E P  +   +E LSDA+LLS
Sbjct: 1  MVSKWKKMKLALSLNLCNYLPRTLEEEPPSLALNSAETLSDAALLS 46