Miyakogusa Predicted Gene

Lj5g3v1806970.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1806970.2 Non Chatacterized Hit- tr|I3SQ56|I3SQ56_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,96.36,0,KH_1,K
Homology domain, type 1; Eukaryotic type KH-domain (KH-domain type
I),NULL; seg,NULL; no desc,CUFF.55961.2
         (220 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13230.1 | Symbols:  | RNA-binding KH domain-containing prote...   334   2e-92

>AT3G13230.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr3:4270423-4271070 FORWARD LENGTH=215
          Length = 215

 Score =  334 bits (857), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 155/211 (73%), Positives = 183/211 (86%)

Query: 8   SSMEVEAVXXXXXXXXXXXXXXXXXXXXMSDGQVQFRKVSVPPHRYTPLKKAWMDLYTPV 67
           + MEVE                      MSDG+VQFRK++VPP+RY+PLKKAW+D+YTP+
Sbjct: 5   TQMEVETATEGTVPLPPKPTFKPLKAHEMSDGKVQFRKIAVPPNRYSPLKKAWLDIYTPI 64

Query: 68  YEQMKIDIRMNLKARKVELKTRRDTPDISNLQKCADFVHAFMLGFDVIDAIALLRLDELY 127
           Y+QMK+DIRMNLKARKVELKTR DTPDISNLQK ADFVHAFMLGFD+ DAI+LLR+DELY
Sbjct: 65  YDQMKVDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDIPDAISLLRMDELY 124

Query: 128 IESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENASKTRIVIADSKIHILGSFANIK 187
           +ESFEIKDVKTL+G+HLSRAIGRLSGKGGKTKFAIEN++KTRIVIAD++IHILG+F+NIK
Sbjct: 125 VESFEIKDVKTLKGEHLSRAIGRLSGKGGKTKFAIENSTKTRIVIADTRIHILGAFSNIK 184

Query: 188 IARDSLCSLILGSPAGKVYSKLRAVTSRLAE 218
           +AR SLCSLI+GSPAGKVYSKLR+V++RL E
Sbjct: 185 VARSSLCSLIMGSPAGKVYSKLRSVSARLNE 215