Miyakogusa Predicted Gene

Lj5g3v1774920.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1774920.2 Non Chatacterized Hit- tr|E1ZMW0|E1ZMW0_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,30.65,0.00000000000002,seg,NULL; Putative single-stranded
nucleic acids-bindi,Single-stranded nucleic acid binding R3H;
coi,CUFF.55908.2
         (453 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10770.2 | Symbols:  | Single-stranded nucleic acid binding R...   123   2e-28
AT3G10770.1 | Symbols:  | Single-stranded nucleic acid binding R...   123   2e-28
AT3G56680.1 | Symbols:  | Single-stranded nucleic acid binding R...   122   7e-28
AT5G05100.1 | Symbols:  | Single-stranded nucleic acid binding R...   120   2e-27
AT2G40960.1 | Symbols:  | Single-stranded nucleic acid binding R...   115   5e-26

>AT3G10770.2 | Symbols:  | Single-stranded nucleic acid binding R3H
           protein | chr3:3372461-3374026 REVERSE LENGTH=325
          Length = 325

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/151 (50%), Positives = 94/151 (62%), Gaps = 7/151 (4%)

Query: 60  VDQFLRDAIQNPRERLSILRMEQDIEKFVRDPNRQQLEFQQLPTSYLRLAAHRLAQHYSL 119
           VD FL +A+QNPR RL+ILRME DI+KF ++P + Q EF   PTSYLRLAAHR+AQHY L
Sbjct: 11  VDPFLVEALQNPRHRLTILRMELDIQKFFQNPEQLQFEFPPFPTSYLRLAAHRVAQHYGL 70

Query: 120 QSMVLLDNSL--PDGSGSRIIVHKTPGCSKLPCIRLADIPVKLPSEDN-EVRKVAIKQRP 176
            +M  LDN     DGS +RI+V KT   S+ P + L++IPVK P     E  K+AIK RP
Sbjct: 71  VTMA-LDNGTGAGDGSDNRILVTKT-AESRFPYVCLSEIPVKQPENGRPEGFKIAIKPRP 128

Query: 177 KKXXXXXXXXXXXXXXXXXXXXVEERKEEYN 207
           K+                    VEERKEEY+
Sbjct: 129 KR--GSGCGGSGSGVQQNLLRSVEERKEEYD 157


>AT3G10770.1 | Symbols:  | Single-stranded nucleic acid binding R3H
           protein | chr3:3372461-3374026 REVERSE LENGTH=333
          Length = 333

 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/151 (50%), Positives = 94/151 (62%), Gaps = 7/151 (4%)

Query: 60  VDQFLRDAIQNPRERLSILRMEQDIEKFVRDPNRQQLEFQQLPTSYLRLAAHRLAQHYSL 119
           VD FL +A+QNPR RL+ILRME DI+KF ++P + Q EF   PTSYLRLAAHR+AQHY L
Sbjct: 11  VDPFLVEALQNPRHRLTILRMELDIQKFFQNPEQLQFEFPPFPTSYLRLAAHRVAQHYGL 70

Query: 120 QSMVLLDNSL--PDGSGSRIIVHKTPGCSKLPCIRLADIPVKLPSEDN-EVRKVAIKQRP 176
            +M  LDN     DGS +RI+V KT   S+ P + L++IPVK P     E  K+AIK RP
Sbjct: 71  VTMA-LDNGTGAGDGSDNRILVTKT-AESRFPYVCLSEIPVKQPENGRPEGFKIAIKPRP 128

Query: 177 KKXXXXXXXXXXXXXXXXXXXXVEERKEEYN 207
           K+                    VEERKEEY+
Sbjct: 129 KR--GSGCGGSGSGVQQNLLRSVEERKEEYD 157


>AT3G56680.1 | Symbols:  | Single-stranded nucleic acid binding R3H
           protein | chr3:20991537-20993446 FORWARD LENGTH=353
          Length = 353

 Score =  122 bits (305), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 95/158 (60%), Gaps = 7/158 (4%)

Query: 52  VSDDIINKVDQFLRDAIQNPRERLSILRMEQDIEKFVRDPNRQQLEFQQLPTSYLRLAAH 111
           V  D    VD FL +A+ N R RL+ILRME D+++ +++P +QQ EFQ  PTSYLRLAAH
Sbjct: 16  VIGDYGFNVDPFLVEALHNSRHRLTILRMELDVQRLLQNPEQQQFEFQHFPTSYLRLAAH 75

Query: 112 RLAQHYSLQSMVLLDNSLPDGSGSRIIVHKTPGCSKLPCIRLADIPVKLPSEDN--EVRK 169
           R+A HY L + V    S  DG+ +RI+V KT   SK P +RL++IPV   SE+   E RK
Sbjct: 76  RVANHYGLATAV--QESGADGNENRILVTKTTE-SKFPAVRLSEIPVAKQSENGKFESRK 132

Query: 170 VAIKQRPKKXXXXXXXXXXXXXXXXXXXXVEERKEEYN 207
           V+IK RP K                    VEERKEEY+
Sbjct: 133 VSIKTRPSK--GSGYGAGDLEKNRGPLRSVEERKEEYD 168


>AT5G05100.1 | Symbols:  | Single-stranded nucleic acid binding R3H
           protein | chr5:1505461-1506940 REVERSE LENGTH=324
          Length = 324

 Score =  120 bits (301), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/150 (49%), Positives = 92/150 (61%), Gaps = 6/150 (4%)

Query: 60  VDQFLRDAIQNPRERLSILRMEQDIEKFVRDPNRQQLEFQQLPTSYLRLAAHRLAQHYSL 119
           VD FL +A+QNPR RL+ILRME DI+KF + P +QQ EFQ LPTSYLRL AHR+AQHY L
Sbjct: 11  VDPFLVEALQNPRHRLTILRMELDIQKFFQSPEQQQYEFQPLPTSYLRLIAHRVAQHYGL 70

Query: 120 QSMVLLDNSLPDGSGSRIIVHKTPGCSKLPCIRLADIPVKLPSEDN--EVRKVAIKQRPK 177
            +  L    + DGSG+RI+  KT   S+ P + L++IPVK P      E  K+AIK RP 
Sbjct: 71  FTTALEGGGV-DGSGNRILATKT-VESRYPYVCLSEIPVKQPEIHGRPEGFKIAIKPRPN 128

Query: 178 KXXXXXXXXXXXXXXXXXXXXVEERKEEYN 207
           +                    VEERKEEY+
Sbjct: 129 R--GAGGSGSGSGVEKNLLRSVEERKEEYD 156


>AT2G40960.1 | Symbols:  | Single-stranded nucleic acid binding R3H
           protein | chr2:17095637-17097368 FORWARD LENGTH=351
          Length = 351

 Score =  115 bits (289), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/149 (46%), Positives = 90/149 (60%), Gaps = 8/149 (5%)

Query: 60  VDQFLRDAIQNPRERLSILRMEQDIEKFVRDPNRQQLEFQQLPTSYLRLAAHRLAQHYSL 119
           VD FL +A+QNPR RL+ILRME D+++F++ P++QQ EFQ  PTSYLR AAHR+A HY L
Sbjct: 21  VDPFLVEALQNPRHRLTILRMELDVQRFLQSPDQQQFEFQHFPTSYLRFAAHRVANHYGL 80

Query: 120 QSMVLLDNSLPDGSGSRIIVHKTPGCSKLPCIRLADIPVKLPSEDN-EVRKVAIKQRPKK 178
            + V   +   DG+ SRI+V K+   S+ P  RL++IPVK       E  KV IK RP K
Sbjct: 81  ITSVR--DGGADGNESRIVVTKSSD-SRFPAARLSEIPVKQSETGKFEHMKVVIKPRPTK 137

Query: 179 XXXXXXXXXXXXXXXXXXXXVEERKEEYN 207
                               VEERKE+Y+
Sbjct: 138 ----GSGMEGDELKGGLLKSVEERKEDYD 162