Miyakogusa Predicted Gene

Lj5g3v1749270.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1749270.1 Non Chatacterized Hit- tr|I3T5B9|I3T5B9_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,77.39,0,diverge_rpsU: rpsU-divergently transcribed
protein,Ubiquinone biosynthesis protein COQ9; GB DEF: T29,CUFF.55853.1
         (310 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19140.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   342   2e-94
AT1G19140.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   338   3e-93

>AT1G19140.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: ubiquinone biosynthetic process; LOCATED
           IN: mitochondrion; EXPRESSED IN: 24 plant structures;
           EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
           DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone
           biosynthesis protein COQ9 (InterPro:IPR012762); Has 748
           Blast hits to 748 proteins in 260 species: Archae - 0;
           Bacteria - 218; Metazoa - 126; Fungi - 101; Plants - 39;
           Viruses - 0; Other Eukaryotes - 264 (source: NCBI
           BLink). | chr1:6611026-6612414 REVERSE LENGTH=311
          Length = 311

 Score =  342 bits (877), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 161/229 (70%), Positives = 193/229 (84%), Gaps = 1/229 (0%)

Query: 81  GEDFRRQETPKPGAKYEDEQARLLSASVTHVLKLGWTEAALIAGAKDVGLSPSIVGSLPR 140
           GE  RR E+ KP A++++EQAR+LSAS+ HV +LGWTE A++AG++DVG+SPSIVGS  R
Sbjct: 73  GEGQRRHESRKPRAEFQEEQARVLSASLRHVPRLGWTEEAMMAGSRDVGVSPSIVGSFSR 132

Query: 141 KEAALVEFFMDDCLQKLIDRIDSDESLKNLLTPSDCISKLIRYRLEMQAPFISSWPQALS 200
           KEAALVEFFMD+CLQ L+DRIDS   L+NL+ PS+ ISKLIR RLEMQ P++S WPQALS
Sbjct: 133 KEAALVEFFMDECLQLLMDRIDSGLDLQNLI-PSERISKLIRIRLEMQVPYMSKWPQALS 191

Query: 201 IQAQPVNVPTSFKQRAMLVDEIWHAAGDNASDIDWYAKRTILGGIYSTTEIYMLTDSSPD 260
           IQA P+NVPTSFKQRAMLVDEIWHA GD ASD+DWY KRTILGG+YSTTEIYMLTD S +
Sbjct: 192 IQAHPLNVPTSFKQRAMLVDEIWHAVGDGASDLDWYVKRTILGGVYSTTEIYMLTDDSLE 251

Query: 261 FRDTWSFLDARVKDAFDLKKTLQEAQYLAEAVSAGLGNSFQGFVGKVFR 309
            RDTW+FLD RVKDAFDLKK++QEA+Y AE + AG+G S QG +  V +
Sbjct: 252 HRDTWAFLDDRVKDAFDLKKSIQEAKYFAEDIGAGVGKSVQGLMNGVMQ 300


>AT1G19140.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: ubiquinone biosynthetic process; LOCATED
           IN: mitochondrion; EXPRESSED IN: 24 plant structures;
           EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
           DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone
           biosynthesis protein COQ9 (InterPro:IPR012762); Has
           35333 Blast hits to 34131 proteins in 2444 species:
           Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
           991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
           (source: NCBI BLink). | chr1:6611026-6612414 REVERSE
           LENGTH=312
          Length = 312

 Score =  338 bits (867), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 161/230 (70%), Positives = 193/230 (83%), Gaps = 2/230 (0%)

Query: 81  GEDFRRQETPKPGAKYEDEQARLLSASVTHVLKLGWTEAALIAGAKDVGLSPSIVGSLPR 140
           GE  RR E+ KP A++++EQAR+LSAS+ HV +LGWTE A++AG++DVG+SPSIVGS  R
Sbjct: 73  GEGQRRHESRKPRAEFQEEQARVLSASLRHVPRLGWTEEAMMAGSRDVGVSPSIVGSFSR 132

Query: 141 KEAALVEFFMDDCLQKLIDRIDSDESLKNLLTPSDCISKLIRYRLEMQAPFISSWPQALS 200
           KEAALVEFFMD+CLQ L+DRIDS   L+NL+ PS+ ISKLIR RLEMQ P++S WPQALS
Sbjct: 133 KEAALVEFFMDECLQLLMDRIDSGLDLQNLI-PSERISKLIRIRLEMQVPYMSKWPQALS 191

Query: 201 IQAQPVNVPTSFKQRAMLVDEIWHAAGDNASDIDWYAKRTILGGIYSTTEIYMLTDSS-P 259
           IQA P+NVPTSFKQRAMLVDEIWHA GD ASD+DWY KRTILGG+YSTTEIYMLTD S  
Sbjct: 192 IQAHPLNVPTSFKQRAMLVDEIWHAVGDGASDLDWYVKRTILGGVYSTTEIYMLTDDSLA 251

Query: 260 DFRDTWSFLDARVKDAFDLKKTLQEAQYLAEAVSAGLGNSFQGFVGKVFR 309
           + RDTW+FLD RVKDAFDLKK++QEA+Y AE + AG+G S QG +  V +
Sbjct: 252 EHRDTWAFLDDRVKDAFDLKKSIQEAKYFAEDIGAGVGKSVQGLMNGVMQ 301