Miyakogusa Predicted Gene

Lj5g3v1737150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1737150.1 Non Chatacterized Hit- tr|I1NHP3|I1NHP3_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,48.12,2e-18,seg,NULL,CUFF.55843.1
         (130 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52230.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    67   2e-12

>AT3G52230.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           outer membrane, chloroplast thylakoid membrane,
           chloroplast, chloroplast envelope; EXPRESSED IN: 24
           plant structures; EXPRESSED DURING: 13 growth stages;
           Has 29 Blast hits to 29 proteins in 12 species: Archae -
           0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr3:19371325-19372397 FORWARD LENGTH=145
          Length = 145

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 2/58 (3%)

Query: 65  VRFPKTQPVAPPSPLQAEADPESSTKTSNPFILWQVYALGGIIISKWIWARWNERHER 122
           V FP   P +   P++ EA+P SS +TSN  ILWQVYALGG ++ KW WARWNER+ER
Sbjct: 63  VTFPYNPPKSA-EPIKFEAEP-SSGRTSNSVILWQVYALGGFLVLKWAWARWNERNER 118