Miyakogusa Predicted Gene

Lj5g3v1723820.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1723820.1 tr|B6K694|B6K694_SCHJY U4/U6 X U5 tri-snRNP
complex subunit Dim1 OS=Schizosaccharomyces japonicus
(s,38.97,2e-19,Thioredoxin-like,Thioredoxin-like fold; DIM1,mRNA
splicing factor, thioredoxin-like U5 snRNP; THIORE,CUFF.56258.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24730.1 | Symbols:  | mRNA splicing factor, thioredoxin-like...   260   3e-70
AT5G08290.1 | Symbols: YLS8 | mRNA splicing factor, thioredoxin-...    97   6e-21

>AT3G24730.1 | Symbols:  | mRNA splicing factor, thioredoxin-like U5
           snRNP | chr3:9030152-9030894 REVERSE LENGTH=159
          Length = 159

 Score =  260 bits (664), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 119/151 (78%), Positives = 138/151 (91%)

Query: 1   MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQIFSKAARDVSKFATVAL 60
           M+Y+L TL+ K+E+D +IRDTID+VLVLRFGR+SD VCLQ D+I +K+ RDVSKFA VAL
Sbjct: 9   MSYLLKTLTTKEEIDRVIRDTIDEVLVLRFGRSSDAVCLQHDEILAKSVRDVSKFAKVAL 68

Query: 61  VDVDSPDIQVYVKYFDITLIPSTMFFFNAHHMKMDSGTADHTKWVGAFHKKQDFIDVVEA 120
           VDVDS D+QVYVKYFDITL PST+FFFNAHHMK+DSGTADHTKWVGAFH KQDFIDVVEA
Sbjct: 69  VDVDSEDVQVYVKYFDITLFPSTIFFFNAHHMKLDSGTADHTKWVGAFHIKQDFIDVVEA 128

Query: 121 IFRGAMKGKLIVNCPLPPERIPKYQLLYQGV 151
           I+RGAMKGK+IV CP+PPERIPKYQL+Y+ V
Sbjct: 129 IYRGAMKGKMIVQCPIPPERIPKYQLVYKDV 159


>AT5G08290.1 | Symbols: YLS8 | mRNA splicing factor,
           thioredoxin-like U5 snRNP | chr5:2666043-2666936 FORWARD
           LENGTH=142
          Length = 142

 Score = 96.7 bits (239), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 6/137 (4%)

Query: 1   MNYMLTTLSKKKEVDSIIRDTIDKVLVLRFGRASDPVCLQLDQIFSKAARDVSKFATVAL 60
           M+Y+L  L     VD  I    ++++V+RFG   D  C+Q+D++ +  A  +  FA + L
Sbjct: 1   MSYLLPHLHSGWAVDQSILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYL 60

Query: 61  VDV-DSPDIQVYVKYFDITLIPST-MFFFNAHHMKMDSGTADHTKWVGAFHKKQDFIDVV 118
           VD+ + PD     + +D    PST MFFF   H+ +D GT ++ K   A   KQ+FID++
Sbjct: 61  VDITEVPDFNTMYELYD----PSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDII 116

Query: 119 EAIFRGAMKGKLIVNCP 135
           E ++RGA KG+ +V  P
Sbjct: 117 ETVYRGARKGRGLVIAP 133