Miyakogusa Predicted Gene
- Lj5g3v1699100.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1699100.1 tr|B3RH40|B3RH40_MEDTR RPG OS=Medicago truncatula
PE=4 SV=1,61.29,0,coiled-coil,NULL; seg,NULL; NT-C2,EEIG1/EHBP1
N-terminal domain,CUFF.55795.1
(1168 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G22060.1 | Symbols: | LOCATED IN: vacuole; EXPRESSED IN: 23 ... 98 4e-20
AT5G52280.1 | Symbols: | Myosin heavy chain-related protein | c... 72 2e-12
AT1G63300.1 | Symbols: | Myosin heavy chain-related protein | c... 69 3e-11
AT5G41140.2 | Symbols: | Myosin heavy chain-related protein | c... 67 9e-11
AT5G41140.1 | Symbols: | Myosin heavy chain-related protein | c... 67 9e-11
>AT1G22060.1 | Symbols: | LOCATED IN: vacuole; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages;
BEST Arabidopsis thaliana protein match is: FBD, F-box
and Leucine Rich Repeat domains containing protein
(TAIR:AT1G22000.1); Has 84739 Blast hits to 38714
proteins in 2257 species: Archae - 1436; Bacteria -
11314; Metazoa - 40747; Fungi - 7706; Plants - 4675;
Viruses - 308; Other Eukaryotes - 18553 (source: NCBI
BLink). | chr1:7773373-7780586 REVERSE LENGTH=1999
Length = 1999
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 73/128 (57%), Gaps = 7/128 (5%)
Query: 47 FQALEIEK-GWNMLFVSIISIETGETIAKSGKASVQNGQCHWEDSML-TTIWVSDDSLQD 104
F A + + GW+ LF+S I ++ + AK+ KA V+NG C W D + TT + D +
Sbjct: 22 FHATHVPQAGWDKLFISFIPADSVKATAKTTKALVRNGTCKWGDPIYETTRLLQDTRTKQ 81
Query: 105 KETCLLKLVVAMGSPKFGTLGEATINLASY---IRPETSTASLPLQHCSHGAILQVKIQC 161
+ L K+VVAMG+ + LGEA INLA Y ++P LPLQ C GAIL V IQ
Sbjct: 82 FDEKLYKIVVAMGTSRSSILGEAMINLAEYADALKP--FAVILPLQGCDPGAILHVTIQL 139
Query: 162 LTSRRKHR 169
LTS+ R
Sbjct: 140 LTSKTGFR 147
>AT5G52280.1 | Symbols: | Myosin heavy chain-related protein |
chr5:21226959-21230109 FORWARD LENGTH=853
Length = 853
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 12/136 (8%)
Query: 30 RHVRDKIQERLDFKFYDFQALEIEKGWNMLFVSIISIETGETIAKSGKASVQNGQCHWED 89
R+ ++KI+ +F Q +++K L +S++ + G+ K K+ V+ G C WE+
Sbjct: 6 RNDKNKIKAVFKLQFQATQVPKLKK--TALMISLVPDDVGKPTFKLEKSEVKEGICSWEN 63
Query: 90 SMLTTIWVSDDSLQDKETCLLK-----LVVAMGSPKFGTLGEATINLASYI-RPETSTAS 143
I+VS +++ +T +++ VVA GS K G LGEA+I+ A ++ + T S
Sbjct: 64 ----PIYVSVKLIKEPKTGIVREKIYHFVVATGSSKSGFLGEASIDFADFLTEADPLTVS 119
Query: 144 LPLQHCSHGAILQVKI 159
LPL+ + GA+L V I
Sbjct: 120 LPLKFANSGAVLNVTI 135
>AT1G63300.1 | Symbols: | Myosin heavy chain-related protein |
chr1:23482193-23486067 FORWARD LENGTH=1029
Length = 1029
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 30 RHVRDKIQERLDFKFYDFQALEIEKGWNMLFVSIISIETGETIAKSGKASVQNGQCHWED 89
R +++I+ KF+ QA + L +S++ + G+ A+S KA V +G C WE
Sbjct: 8 RSEKNRIKVVFRLKFHATQASQF--NTEGLILSLVPGDIGKPTARSEKAIVNDGHCRWEI 65
Query: 90 SMLTTI-WVSDDSLQDKETCLLKLVVA-MGSPKFGTLGEATINLASYI-RPETSTASLPL 146
+ T+ ++ D + L+V+ GS + G +GE +I+ A Y+ +T SLPL
Sbjct: 66 PVYETVKFLKDVKTGKVNQRIYHLIVSTTGSARGGLVGETSIDFADYVDATKTCNVSLPL 125
Query: 147 QHCSHGAILQVKIQ 160
Q+ S A+L V IQ
Sbjct: 126 QNSSSKALLHVSIQ 139
>AT5G41140.2 | Symbols: | Myosin heavy chain-related protein |
chr5:16468726-16472546 FORWARD LENGTH=976
Length = 976
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 13/134 (9%)
Query: 34 DKIQERLDFKFYDFQALEIEKGWNMLFVSIISIETGETIAKSGKASVQNGQCHWEDSMLT 93
+KI+ +F+ Q +++ L +S++ + G++ K+ KA V +G C WE +
Sbjct: 13 NKIKIVFKLQFHATQVTQLKAEG--LTISVVPGDVGKSTGKAEKAMVLDGHCRWESPVYE 70
Query: 94 TIWVSDDSLQDKETC-----LLKLVVA-MGSPKFGTLGEATINLASYIRP-ETSTASLPL 146
T+ LQD +T + LV++ GS K G +GE +I+ A Y+ +T SLPL
Sbjct: 71 TVKF----LQDVKTGKVNQRIYHLVMSTTGSTKSGVVGETSIDFADYVDAIKTCNVSLPL 126
Query: 147 QHCSHGAILQVKIQ 160
Q+ + A+L V IQ
Sbjct: 127 QNSNSKAMLHVAIQ 140
>AT5G41140.1 | Symbols: | Myosin heavy chain-related protein |
chr5:16468726-16472546 FORWARD LENGTH=983
Length = 983
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 13/134 (9%)
Query: 34 DKIQERLDFKFYDFQALEIEKGWNMLFVSIISIETGETIAKSGKASVQNGQCHWEDSMLT 93
+KI+ +F+ Q +++ L +S++ + G++ K+ KA V +G C WE +
Sbjct: 13 NKIKIVFKLQFHATQVTQLKAEG--LTISVVPGDVGKSTGKAEKAMVLDGHCRWESPVYE 70
Query: 94 TIWVSDDSLQDKETC-----LLKLVVA-MGSPKFGTLGEATINLASYIRP-ETSTASLPL 146
T+ LQD +T + LV++ GS K G +GE +I+ A Y+ +T SLPL
Sbjct: 71 TVKF----LQDVKTGKVNQRIYHLVMSTTGSTKSGVVGETSIDFADYVDAIKTCNVSLPL 126
Query: 147 QHCSHGAILQVKIQ 160
Q+ + A+L V IQ
Sbjct: 127 QNSNSKAMLHVAIQ 140