Miyakogusa Predicted Gene
- Lj5g3v1699090.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1699090.1 tr|G8A1I5|G8A1I5_MEDTR Protein neuralized
OS=Medicago truncatula GN=MTR_121s0017 PE=4 SV=1,87.69,0,seg,NULL;
zf-C3HC4_3,NULL; ZF_RING_2,Zinc finger, RING-type; no description,Zinc
finger, RING/FYVE/P,CUFF.55799.1
(853 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G04460.3 | Symbols: | RING/U-box superfamily protein | chr5:... 772 0.0
AT5G04460.1 | Symbols: | RING/U-box superfamily protein | chr5:... 772 0.0
AT5G04460.2 | Symbols: | RING/U-box superfamily protein | chr5:... 687 0.0
AT2G27950.1 | Symbols: | Ring/U-Box superfamily protein | chr2:... 246 4e-65
AT1G30860.1 | Symbols: | RING/U-box superfamily protein | chr1:... 97 6e-20
AT2G34920.1 | Symbols: EDA18 | RING/U-box superfamily protein | ... 93 8e-19
AT4G20160.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN:... 60 6e-09
AT5G19080.1 | Symbols: | RING/U-box superfamily protein | chr5:... 53 1e-06
AT3G23280.2 | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis th... 51 3e-06
AT3G23280.1 | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis th... 51 3e-06
AT3G06140.1 | Symbols: | RING/U-box superfamily protein | chr3:... 50 7e-06
AT2G38195.2 | Symbols: | RING/U-box superfamily protein | chr2:... 50 9e-06
>AT5G04460.3 | Symbols: | RING/U-box superfamily protein |
chr5:1260009-1263695 FORWARD LENGTH=863
Length = 863
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/876 (52%), Positives = 535/876 (61%), Gaps = 36/876 (4%)
Query: 1 MTDIQPLQQKPEPAD-AHAEFERGLEEFMRGHLDDCMSFASCSSSRVHDDEDDEGDQLVR 59
MT IQPL QK E D AEFERGLEEFMRGHLD+C+SF SCSS +DED+E DQLVR
Sbjct: 1 MTSIQPLLQKSESRDDVRAEFERGLEEFMRGHLDECISFGSCSSVHNPEDEDNEDDQLVR 60
Query: 60 RRRRSDLEGDDLXXXXXXXXXXXXXXXXXXARQAQEMITTIERRNRESELMALAGLHTVS 119
RRRRS+LEGD+L ARQAQEMITTIERRNRESEL+ALAGL TVS
Sbjct: 61 RRRRSELEGDNLAESSAARRRQSQILSRWAARQAQEMITTIERRNRESELIALAGLQTVS 120
Query: 120 MLDSSFLRGSQSPTSGQE---GAVERPSTQASAILQMWRELEDEHVINXXXXXXXXXXXX 176
MLDSSFLR SQS + A ERP+TQAS ILQMWRELEDEHV+N
Sbjct: 121 MLDSSFLRESQSQSPSSRRQGAASERPNTQASGILQMWRELEDEHVLNRARERVRERLRQ 180
Query: 177 XXSSDSNANVSSTM-SDSRGSENQGSLGDASESENDYGTWSHDQIXXXXXXXXXXXXXXE 235
S +SN N+SS++ S+S+ SEN GSL D+SESEND+G+WSHD+ E
Sbjct: 181 QRSVESNTNLSSSIASESQLSENNGSLRDSSESENDFGSWSHDR---NEHGDNNNTSSRE 237
Query: 236 QSPDLGXXXXXXXXXXXXGWMESGISDHSSNVSQXXXXXXAEWLGXXXXXXXXXXXXXXQ 295
QSPDLG GWM+S I+DHSSNV Q EWLG Q
Sbjct: 238 QSPDLGDGERERVRHIARGWMDSRINDHSSNVRQRDDNRRPEWLGDTERERVRIIREWMQ 297
Query: 296 MTXXXX----------XXXXXXXDAQVSEPAQHDRARDGVA-DHDDGQPEHVRRDMLRLR 344
MT D Q DR R G+A +H++GQP HVRRD+ R+R
Sbjct: 298 MTSQQRGGARATPREDQRSTSEADRNHDAAPQVDRVRVGLAVNHEEGQPPHVRRDLRRVR 357
Query: 345 GRQAXXXXXXXXXXXXXXXXXXXXXHRAVSDFAHRNRIQSLLRGRFLRNERPVEDERPPS 404
GRQA HRAVSDFAHRNRIQSLLRGRFLRNERP ER PS
Sbjct: 358 GRQALLDLLMRAERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPS 417
Query: 405 GAASELVQLRQRHTVSGIREGFRSRLENIVRGQSGTSPDTTSNSNIDETRNDENQTSNLI 464
A+ EL+QLR+R TVSG+REGF + ENIV + TSN++ D + N + I
Sbjct: 418 MASRELLQLRERQTVSGLREGFHNGRENIVH-------ENTSNTDNDNSNTSTNALAIAI 470
Query: 465 RAQQDNYEEEQIGSLETDVHEFPNQTGTTDSSTGET-ITWQESSNQGGNWQEQIAEDGGG 523
A ++ + ++ P ++S+ W+E +NQ WQE + D
Sbjct: 471 TAGNSQRVTDESSTSSRQGNDSPILPDNSESNLANADRDWEEDTNQRRIWQENVPVDERP 530
Query: 524 SWQQRTYGQFN------QPRDRRAVRDWPLETSRDQAGEDPPHPREPQRVWHEDSTREAV 577
+ +Q T QF+ RD +V D E S +D +E VWHE+S+R++
Sbjct: 531 NLEQTTLTQFDGYDNTDINRDETSVSDMHREAS--GFADDEYRTQEAHGVWHENSSRQSD 588
Query: 578 GNWSEGPSGASRNRRGVPFRRFNRFHPPDDDNVYSMEXXXXXXXXXXXXXXXXGFRESLD 637
GNW S A R+RR V RR NRFHPP+DDNVYSME GFRESLD
Sbjct: 589 GNWPGTRSEALRSRRVVQLRRLNRFHPPEDDNVYSMELRELLSRRSVSNLLHSGFRESLD 648
Query: 638 QLIQSYVERQGRAPIDWDLHRNLPTPTPASPEREPDQQGDEHNEGQHETMNRXXXXXXXX 697
QLIQSY ER+G +DWDLH NL T P SPER+ D Q N+ Q +N
Sbjct: 649 QLIQSYAERRGHTHVDWDLHANLQTAIPDSPERDTDHQVFVRNDNQLNGIN-GSQLLPTP 707
Query: 698 XXXXXXXXWHQDLHQTGWSRHSMHRSEMEWEIMNDLRSDMARLQQGMNHMQRMLEACMDM 757
WHQDLH T WSRHSMHRSE+EWE+MNDLR D+ARLQQGM+ MQRMLEACMDM
Sbjct: 708 PAPPPQPIWHQDLHHTSWSRHSMHRSEIEWEVMNDLRGDVARLQQGMSQMQRMLEACMDM 767
Query: 758 QLELQRSVRQEVSAALNRSAGENGSVAETSDDGSKWGHVKKGTCCVCCDSHIDSLLYRCG 817
QLELQRSVRQEVSAALNRSAG+ G AETS+DGS+W HV KGTCCVCCD+HID+LLYRCG
Sbjct: 768 QLELQRSVRQEVSAALNRSAGDQGMSAETSEDGSRWSHVSKGTCCVCCDNHIDALLYRCG 827
Query: 818 HMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 853
HMCTCSKCANEL+R GGKCPLCRAPI+EV+RAYSIL
Sbjct: 828 HMCTCSKCANELVRNGGKCPLCRAPIIEVIRAYSIL 863
>AT5G04460.1 | Symbols: | RING/U-box superfamily protein |
chr5:1260009-1263695 FORWARD LENGTH=863
Length = 863
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/876 (52%), Positives = 535/876 (61%), Gaps = 36/876 (4%)
Query: 1 MTDIQPLQQKPEPAD-AHAEFERGLEEFMRGHLDDCMSFASCSSSRVHDDEDDEGDQLVR 59
MT IQPL QK E D AEFERGLEEFMRGHLD+C+SF SCSS +DED+E DQLVR
Sbjct: 1 MTSIQPLLQKSESRDDVRAEFERGLEEFMRGHLDECISFGSCSSVHNPEDEDNEDDQLVR 60
Query: 60 RRRRSDLEGDDLXXXXXXXXXXXXXXXXXXARQAQEMITTIERRNRESELMALAGLHTVS 119
RRRRS+LEGD+L ARQAQEMITTIERRNRESEL+ALAGL TVS
Sbjct: 61 RRRRSELEGDNLAESSAARRRQSQILSRWAARQAQEMITTIERRNRESELIALAGLQTVS 120
Query: 120 MLDSSFLRGSQSPTSGQE---GAVERPSTQASAILQMWRELEDEHVINXXXXXXXXXXXX 176
MLDSSFLR SQS + A ERP+TQAS ILQMWRELEDEHV+N
Sbjct: 121 MLDSSFLRESQSQSPSSRRQGAASERPNTQASGILQMWRELEDEHVLNRARERVRERLRQ 180
Query: 177 XXSSDSNANVSSTM-SDSRGSENQGSLGDASESENDYGTWSHDQIXXXXXXXXXXXXXXE 235
S +SN N+SS++ S+S+ SEN GSL D+SESEND+G+WSHD+ E
Sbjct: 181 QRSVESNTNLSSSIASESQLSENNGSLRDSSESENDFGSWSHDR---NEHGDNNNTSSRE 237
Query: 236 QSPDLGXXXXXXXXXXXXGWMESGISDHSSNVSQXXXXXXAEWLGXXXXXXXXXXXXXXQ 295
QSPDLG GWM+S I+DHSSNV Q EWLG Q
Sbjct: 238 QSPDLGDGERERVRHIARGWMDSRINDHSSNVRQRDDNRRPEWLGDTERERVRIIREWMQ 297
Query: 296 MTXXXX----------XXXXXXXDAQVSEPAQHDRARDGVA-DHDDGQPEHVRRDMLRLR 344
MT D Q DR R G+A +H++GQP HVRRD+ R+R
Sbjct: 298 MTSQQRGGARATPREDQRSTSEADRNHDAAPQVDRVRVGLAVNHEEGQPPHVRRDLRRVR 357
Query: 345 GRQAXXXXXXXXXXXXXXXXXXXXXHRAVSDFAHRNRIQSLLRGRFLRNERPVEDERPPS 404
GRQA HRAVSDFAHRNRIQSLLRGRFLRNERP ER PS
Sbjct: 358 GRQALLDLLMRAERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPS 417
Query: 405 GAASELVQLRQRHTVSGIREGFRSRLENIVRGQSGTSPDTTSNSNIDETRNDENQTSNLI 464
A+ EL+QLR+R TVSG+REGF + ENIV + TSN++ D + N + I
Sbjct: 418 MASRELLQLRERQTVSGLREGFHNGRENIVH-------ENTSNTDNDNSNTSTNALAIAI 470
Query: 465 RAQQDNYEEEQIGSLETDVHEFPNQTGTTDSSTGET-ITWQESSNQGGNWQEQIAEDGGG 523
A ++ + ++ P ++S+ W+E +NQ WQE + D
Sbjct: 471 TAGNSQRVTDESSTSSRQGNDSPILPDNSESNLANADRDWEEDTNQRRIWQENVPVDERP 530
Query: 524 SWQQRTYGQFN------QPRDRRAVRDWPLETSRDQAGEDPPHPREPQRVWHEDSTREAV 577
+ +Q T QF+ RD +V D E S +D +E VWHE+S+R++
Sbjct: 531 NLEQTTLTQFDGYDNTDINRDETSVSDMHREAS--GFADDEYRTQEAHGVWHENSSRQSD 588
Query: 578 GNWSEGPSGASRNRRGVPFRRFNRFHPPDDDNVYSMEXXXXXXXXXXXXXXXXGFRESLD 637
GNW S A R+RR V RR NRFHPP+DDNVYSME GFRESLD
Sbjct: 589 GNWPGTRSEALRSRRVVQLRRLNRFHPPEDDNVYSMELRELLSRRSVSNLLHSGFRESLD 648
Query: 638 QLIQSYVERQGRAPIDWDLHRNLPTPTPASPEREPDQQGDEHNEGQHETMNRXXXXXXXX 697
QLIQSY ER+G +DWDLH NL T P SPER+ D Q N+ Q +N
Sbjct: 649 QLIQSYAERRGHTHVDWDLHANLQTAIPDSPERDTDHQVFVRNDNQLNGIN-GSQLLPTP 707
Query: 698 XXXXXXXXWHQDLHQTGWSRHSMHRSEMEWEIMNDLRSDMARLQQGMNHMQRMLEACMDM 757
WHQDLH T WSRHSMHRSE+EWE+MNDLR D+ARLQQGM+ MQRMLEACMDM
Sbjct: 708 PAPPPQPIWHQDLHHTSWSRHSMHRSEIEWEVMNDLRGDVARLQQGMSQMQRMLEACMDM 767
Query: 758 QLELQRSVRQEVSAALNRSAGENGSVAETSDDGSKWGHVKKGTCCVCCDSHIDSLLYRCG 817
QLELQRSVRQEVSAALNRSAG+ G AETS+DGS+W HV KGTCCVCCD+HID+LLYRCG
Sbjct: 768 QLELQRSVRQEVSAALNRSAGDQGMSAETSEDGSRWSHVSKGTCCVCCDNHIDALLYRCG 827
Query: 818 HMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 853
HMCTCSKCANEL+R GGKCPLCRAPI+EV+RAYSIL
Sbjct: 828 HMCTCSKCANELVRNGGKCPLCRAPIIEVIRAYSIL 863
>AT5G04460.2 | Symbols: | RING/U-box superfamily protein |
chr5:1260009-1263502 FORWARD LENGTH=825
Length = 825
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/838 (50%), Positives = 498/838 (59%), Gaps = 36/838 (4%)
Query: 1 MTDIQPLQQKPEPAD-AHAEFERGLEEFMRGHLDDCMSFASCSSSRVHDDEDDEGDQLVR 59
MT IQPL QK E D AEFERGLEEFMRGHLD+C+SF SCSS +DED+E DQLVR
Sbjct: 1 MTSIQPLLQKSESRDDVRAEFERGLEEFMRGHLDECISFGSCSSVHNPEDEDNEDDQLVR 60
Query: 60 RRRRSDLEGDDLXXXXXXXXXXXXXXXXXXARQAQEMITTIERRNRESELMALAGLHTVS 119
RRRRS+LEGD+L ARQAQEMITTIERRNRESEL+ALAGL TVS
Sbjct: 61 RRRRSELEGDNLAESSAARRRQSQILSRWAARQAQEMITTIERRNRESELIALAGLQTVS 120
Query: 120 MLDSSFLRGSQSPTSGQE---GAVERPSTQASAILQMWRELEDEHVINXXXXXXXXXXXX 176
MLDSSFLR SQS + A ERP+TQAS ILQMWRELEDEHV+N
Sbjct: 121 MLDSSFLRESQSQSPSSRRQGAASERPNTQASGILQMWRELEDEHVLNRARERVRERLRQ 180
Query: 177 XXSSDSNANVSSTM-SDSRGSENQGSLGDASESENDYGTWSHDQIXXXXXXXXXXXXXXE 235
S +SN N+SS++ S+S+ SEN GSL D+SESEND+G+WSHD+ E
Sbjct: 181 QRSVESNTNLSSSIASESQLSENNGSLRDSSESENDFGSWSHDR---NEHGDNNNTSSRE 237
Query: 236 QSPDLGXXXXXXXXXXXXGWMESGISDHSSNVSQXXXXXXAEWLGXXXXXXXXXXXXXXQ 295
QSPDLG GWM+S I+DHSSNV Q EWLG Q
Sbjct: 238 QSPDLGDGERERVRHIARGWMDSRINDHSSNVRQRDDNRRPEWLGDTERERVRIIREWMQ 297
Query: 296 MTXXXX----------XXXXXXXDAQVSEPAQHDRARDGVA-DHDDGQPEHVRRDMLRLR 344
MT D Q DR R G+A +H++GQP HVRRD+ R+R
Sbjct: 298 MTSQQRGGARATPREDQRSTSEADRNHDAAPQVDRVRVGLAVNHEEGQPPHVRRDLRRVR 357
Query: 345 GRQAXXXXXXXXXXXXXXXXXXXXXHRAVSDFAHRNRIQSLLRGRFLRNERPVEDERPPS 404
GRQA HRAVSDFAHRNRIQSLLRGRFLRNERP ER PS
Sbjct: 358 GRQALLDLLMRAERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPTVPERTPS 417
Query: 405 GAASELVQLRQRHTVSGIREGFRSRLENIVRGQSGTSPDTTSNSNIDETRNDENQTSNLI 464
A+ EL+QLR+R TVSG+REGF + ENIV + TSN++ D + N + I
Sbjct: 418 MASRELLQLRERQTVSGLREGFHNGRENIVH-------ENTSNTDNDNSNTSTNALAIAI 470
Query: 465 RAQQDNYEEEQIGSLETDVHEFPNQTGTTDSSTGET-ITWQESSNQGGNWQEQIAEDGGG 523
A ++ + ++ P ++S+ W+E +NQ WQE + D
Sbjct: 471 TAGNSQRVTDESSTSSRQGNDSPILPDNSESNLANADRDWEEDTNQRRIWQENVPVDERP 530
Query: 524 SWQQRTYGQFN------QPRDRRAVRDWPLETSRDQAGEDPPHPREPQRVWHEDSTREAV 577
+ +Q T QF+ RD +V D E S +D +E VWHE+S+R++
Sbjct: 531 NLEQTTLTQFDGYDNTDINRDETSVSDMHREAS--GFADDEYRTQEAHGVWHENSSRQSD 588
Query: 578 GNWSEGPSGASRNRRGVPFRRFNRFHPPDDDNVYSMEXXXXXXXXXXXXXXXXGFRESLD 637
GNW S A R+RR V RR NRFHPP+DDNVYSME GFRESLD
Sbjct: 589 GNWPGTRSEALRSRRVVQLRRLNRFHPPEDDNVYSMELRELLSRRSVSNLLHSGFRESLD 648
Query: 638 QLIQSYVERQGRAPIDWDLHRNLPTPTPASPEREPDQQGDEHNEGQHETMNRXXXXXXXX 697
QLIQSY ER+G +DWDLH NL T P SPER+ D Q N+ Q +N
Sbjct: 649 QLIQSYAERRGHTHVDWDLHANLQTAIPDSPERDTDHQVFVRNDNQLNGIN-GSQLLPTP 707
Query: 698 XXXXXXXXWHQDLHQTGWSRHSMHRSEMEWEIMNDLRSDMARLQQGMNHMQRMLEACMDM 757
WHQDLH T WSRHSMHRSE+EWE+MNDLR D+ARLQQGM+ MQRMLEACMDM
Sbjct: 708 PAPPPQPIWHQDLHHTSWSRHSMHRSEIEWEVMNDLRGDVARLQQGMSQMQRMLEACMDM 767
Query: 758 QLELQRSVRQEVSAALNRSAGENGSVAETSDDGSKWGHVKKGTCCVCCDSHIDSLLYR 815
QLELQRSVRQEVSAALNRSAG+ G AETS+DGS+W HV KGTCCVCCD+HID+LLYR
Sbjct: 768 QLELQRSVRQEVSAALNRSAGDQGMSAETSEDGSRWSHVSKGTCCVCCDNHIDALLYR 825
>AT2G27950.1 | Symbols: | Ring/U-Box superfamily protein |
chr2:11899422-11903171 REVERSE LENGTH=839
Length = 839
Score = 246 bits (629), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 127/283 (44%), Positives = 169/283 (59%), Gaps = 7/283 (2%)
Query: 572 STREAVGNWSEGPSGASRNRRGVPFRRFNRFHPPDDDNVYSMEXXXXXXXXXXXXXXXXG 631
S + + +WSE S ++ V R F PPDD N +ME G
Sbjct: 563 SLQSTIQDWSEEHS----DQDTVSMGRATTFFPPDDGNENNMELRELSSRRRVSNLLQSG 618
Query: 632 FRESLDQLIQSYVERQGRAPIDWDLHRNLPTPTPASPEREPDQQGDEHNEGQHETMNRXX 691
FRE+L QLIQSY++R+ + P+DW+ T + E QQ D + GQ
Sbjct: 619 FRENLSQLIQSYMDRRSQNPVDWEEAETYSDHTIVGEDTE--QQDDAQSGGQELDAVESP 676
Query: 692 XXXXXXXXXXXXXXWHQDLHQTGWSRHSMHRS-EMEWEIMNDLRSDMARLQQGMNHMQRM 750
W D + W H +H+ M+W+ +NDLR DM R+QQ M+++QRM
Sbjct: 677 PLTLPSPVIPIQPRWDHDRSHSNWPAHDLHQGIGMDWDSINDLRVDMGRIQQRMDNLQRM 736
Query: 751 LEACMDMQLELQRSVRQEVSAALNRSAGENGSVAETSDDGSKWGHVKKGTCCVCCDSHID 810
LEACM+MQLELQRS+RQEVSAA++RS + G +T+ SKW +V+KG CCVCC+S+ID
Sbjct: 737 LEACMEMQLELQRSIRQEVSAAMHRSTDQPGPSKDTASYESKWEYVRKGICCVCCESNID 796
Query: 811 SLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL 853
SLLYRCGHM TC KCA +L+ GGKCP+C+AP++EVVRAYSIL
Sbjct: 797 SLLYRCGHMNTCEKCAKKLVEAGGKCPMCQAPVIEVVRAYSIL 839
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 121/359 (33%), Positives = 163/359 (45%), Gaps = 8/359 (2%)
Query: 110 MALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASAILQMWRELEDEHVINXXXXX 169
MA+AGL + ++DSSF R S+ + Q R S +AS++LQMWRELED+HV+
Sbjct: 1 MAIAGLQNILVIDSSFRRDSEVQATRQRENEGRSSVRASSLLQMWRELEDDHVMGHARER 60
Query: 170 XXXXXXXXXSSDSNANVSSTMSDSRGSENQGSLGDASESENDYGTWSHDQ--IXXXXXXX 227
S++ + DS S + + EN+ G WS Q +
Sbjct: 61 DGERRSVSSPSNT---MRGNGCDSNISAHDIVRDSVNLGENELGGWSPTQSHVGSHNSSE 117
Query: 228 XXXXXXXEQSPDLGXXXXXXXXXXXXGWMESGISDHSSNVSQXXXXXXAEWLGXXXXXXX 287
E DLG W SG H+ + SQ AEWLG
Sbjct: 118 DLGPFQSEHFSDLGMGERERVRQIFREWTSSGTGQHTDSASQATNSSRAEWLGETEQERV 177
Query: 288 XXXXXXXQMTXXXXXXXXXXXDAQVSEPA-QHDRARDG-VADHDDGQPEHVRRDMLRLRG 345
QM + Q E A Q +R DG V + + Q EH RR + +L G
Sbjct: 178 RIIREMVQMNSQQRPALGDLREEQPIEGANQIERVLDGIVVNPNSIQNEHARRGIRKLCG 237
Query: 346 RQAXXXXXXXXXXXXXXXXXXXXXHRAVSDFAHRNRIQSLLRGRFLRNERPVEDERPPSG 405
RQ H AVS+FAHRNRIQ+LLRGRFLRN + E+P S
Sbjct: 238 RQVWVDMLKMAEMERQRELEGLMQHHAVSNFAHRNRIQALLRGRFLRNGDNDDKEKPTSS 297
Query: 406 AASELVQLRQRHTVSGIREGFRSRLENIVRGQS-GTSPDTTSNSNIDETRNDENQTSNL 463
AA+EL LR+RHTVS +RE F SRL+ GQ+ + +T+SN+ D R ++N + L
Sbjct: 298 AATELGFLRERHTVSELREEFISRLDRSASGQASSSHSETSSNAETDHNRGEQNDLNCL 356
>AT1G30860.1 | Symbols: | RING/U-box superfamily protein |
chr1:10986696-10989246 REVERSE LENGTH=730
Length = 730
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 26/124 (20%)
Query: 726 EWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGSVAE 785
E E+++ +RS + +LQQ M+ ++ ++ C+D LQ QE
Sbjct: 627 EMELISGMRSQIQQLQQEMSVLRDSVKTCLDANASLQHKAHQE----------------- 669
Query: 786 TSDDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVE 845
+ K CCVC ++ ++++LYRCGHMC C KCANEL GGKCP+CRA IV+
Sbjct: 670 ---------NPMKRKCCVCDETQVEAVLYRCGHMCMCLKCANELHWSGGKCPICRAQIVD 720
Query: 846 VVRA 849
VVR
Sbjct: 721 VVRV 724
>AT2G34920.1 | Symbols: EDA18 | RING/U-box superfamily protein |
chr2:14728375-14730816 REVERSE LENGTH=652
Length = 652
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 61/111 (54%), Gaps = 26/111 (23%)
Query: 740 LQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGSVAETSDDGSKWGHVKKG 799
LQ M+ ++ ++ C+D+ LQ+SV E + K
Sbjct: 563 LQLEMSELRDSVKTCLDVNASLQKSVHLE--------------------------NPFKR 596
Query: 800 TCCVCCDSHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAY 850
CCVC ++ +++LLYRCGHMCTC +CANEL GGKCP+C A I++VVR +
Sbjct: 597 KCCVCNETQVETLLYRCGHMCTCLRCANELQYNGGKCPICHAKILDVVRVF 647
>AT4G20160.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: 6
plant structures; EXPRESSED DURING: L mature pollen
stage, M germinated pollen stage, 4 anthesis, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: RING/U-box superfamily protein
(TAIR:AT1G30860.1); Has 64917 Blast hits to 39974
proteins in 1949 species: Archae - 279; Bacteria - 7425;
Metazoa - 26604; Fungi - 5788; Plants - 3193; Viruses -
275; Other Eukaryotes - 21353 (source: NCBI BLink). |
chr4:10890983-10894971 FORWARD LENGTH=1188
Length = 1188
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 12/100 (12%)
Query: 721 HRSEMEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEN 780
++S + + ++DL+ M +LQ+ M ++ +++C+DMQL Q+SV Q++S +
Sbjct: 1089 NQSTQDMQTISDLKEQMEQLQREMLELRNTVKSCIDMQLHFQKSVTQDLSRS-------- 1140
Query: 781 GSVAETSDDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMC 820
GS AE D K +K CCVC + +DSLLYR + C
Sbjct: 1141 GSSAEQRVDPKKDPLKRK--CCVCSEMPVDSLLYR--YFC 1176
>AT5G19080.1 | Symbols: | RING/U-box superfamily protein |
chr5:6378400-6380287 FORWARD LENGTH=378
Length = 378
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 801 CCVCCDSHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVR 848
C +C D+ + C H+C CS CA EL KCP+CR PI E+V+
Sbjct: 321 CVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVK 368
>AT3G23280.2 | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis
thaliana | chr3:8321588-8324109 FORWARD LENGTH=438
Length = 438
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 799 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSI 852
GTC +C D+ +++ CGH+ C C E+ CP+CRA I +V++ Y +
Sbjct: 385 GTCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 438
>AT3G23280.1 | Symbols: XBAT35 | XB3 ortholog 5 in Arabidopsis
thaliana | chr3:8321588-8324109 FORWARD LENGTH=462
Length = 462
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 799 GTCCVCCDSHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSI 852
GTC +C D+ +++ CGH+ C C E+ CP+CRA I +V++ Y +
Sbjct: 409 GTCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 462
>AT3G06140.1 | Symbols: | RING/U-box superfamily protein |
chr3:1856993-1858777 REVERSE LENGTH=359
Length = 359
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 801 CCVCCDSHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVV 847
C +C D+ + C H+C CS CA EL KCP+CR PI E++
Sbjct: 302 CVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELL 348
>AT2G38195.2 | Symbols: | RING/U-box superfamily protein |
chr2:16002654-16006261 FORWARD LENGTH=326
Length = 326
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 798 KGTCCVCCDSHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYS 851
K C +C D+ D CGH +C +C ++ R G+CP+CR I+ V R Y+
Sbjct: 272 KSLCAICFDAPRDCCFLPCGHCVSCYQCGTKIKRTKGRCPICRKKIMHVKRIYT 325