Miyakogusa Predicted Gene

Lj5g3v1697590.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1697590.1 Non Chatacterized Hit- tr|I1NHV0|I1NHV0_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,60.02,0,seg,NULL,CUFF.55756.1
         (1265 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10650.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   266   7e-71
AT5G20200.1 | Symbols:  | nucleoporin-related | chr5:6816776-682...    67   1e-10

>AT3G10650.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042
           Blast hits to 31782 proteins in 2093 species: Archae -
           202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552;
           Plants - 1653; Viruses - 629; Other Eukaryotes - 13509
           (source: NCBI BLink). | chr3:3325562-3330819 REVERSE
           LENGTH=1309
          Length = 1309

 Score =  266 bits (680), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 247/660 (37%), Positives = 330/660 (50%), Gaps = 107/660 (16%)

Query: 17  KFRKRLFGRTKTTPYDRPPAPTPLRNPNRNNG------WFSKLVVDPAHRLITHSAHSLF 70
           KFRK    R++ TPYDRP   T +RN     G      W SKLV DPA RLIT+SA  LF
Sbjct: 22  KFRKPTARRSQKTPYDRPT--TSVRNAGLGGGDVRGGGWLSKLV-DPAQRLITYSAQRLF 78

Query: 71  SSLFRKRLT--HTP-HSSETQK---------EVQDNHQEEAAFVAINSSGKQQGAVGESD 118
            SL RKRL    TP  S E QK         E +  H+E+ + +++     + G +   D
Sbjct: 79  GSLSRKRLGSGETPLQSPEQQKQLPERGVNQETKVGHKEDVSNLSM-----KNGLIRMED 133

Query: 119 VQINCSD-GSGXXXXXXXXXXXXFTRSERDQLTALMRSRTVGEPVREEEKKTE--MVPSE 175
              +      G            FTRSE D+LT L+RS+        EE++ E  MV   
Sbjct: 134 TNASVDPPKDGFTDLEKILQGKTFTRSEVDRLTTLLRSKAADSSTMNEEQRNEVGMVVRH 193

Query: 176 PFLPFREKEE-YPKTPALENGIENHLVKTPDIFTSSVPTEDFASPAALAKVYMGSRNSKV 234
           P  P  E++  +P     +NG  N LV TP     ++  E  ASPA LAK YMGSR S+V
Sbjct: 194 P--PSHERDRTHP-----DNGSMNTLVSTPPGSLRTL-DECIASPAQLAKAYMGSRPSEV 245

Query: 235 SSSMLGMRNPALGEDSTPLKSENLSLKSPIMSIVPRATRHAAVHENGRVTSRSHGRSAIY 294
           + SMLG+R  A  EDS  L       KSP MS+V + +    + ENG VT RS GRSA+Y
Sbjct: 246 TPSMLGLRGQAGREDSVFLNRTPFPQKSPTMSLVTKPSGQRPL-ENGFVTPRSRGRSAVY 304

Query: 295 SMARTPYSRICPTSTLKGGVLAIEGGPSSSTQSALDHGMLSVSKQ---RAVKRRSLALDS 351
           SMARTPYSR  P S++K G L  +  PS       +  + S S+Q     +KRRS  LD+
Sbjct: 305 SMARTPYSR--PQSSVKIGSL-FQASPSK-----WEESLPSGSRQGFQSGLKRRSSVLDN 356

Query: 352 DIGSGGPIRRVRQKSNKXXXXXXXXXXXXFTKSGLGIDAAQQPSSSMQKPKFLDEVKHNH 411
           DIGS GP+RR+RQKSN              +   L +  ++ P S          V+ N 
Sbjct: 357 DIGSVGPVRRIRQKSN-------------LSSRSLALPVSESPLS----------VRANG 393

Query: 412 MKLSEQNGYDT---VP--SMSLTPSRSISSETASKIQQQLDRLVSPPKEKSSELRLQSAY 466
            + +     D+   +P  S +L P++S  SE ASKI QQLD+LVS  +EKS         
Sbjct: 394 GEKTTHTSKDSAEDIPGSSFNLVPTKS--SEMASKILQQLDKLVST-REKS--------- 441

Query: 467 NNPPMKLSPSMLHGQALRSMEMVDSSKLLDNLQSNKSDGTLENSSATAQKQKLT----SN 522
              P KLSPSML G AL+S++ V++ K L NL   K++    +  ++ QKQ+++    S 
Sbjct: 442 ---PSKLSPSMLRGPALKSLQNVEAPKFLGNLPEKKAN----SPDSSYQKQEISRESVSR 494

Query: 523 STLKPSNELLPAVTSACATNSSNQVLCDAKSVDSYMINSVSYPPQKKRAFRMSAHEDSLD 582
             L  S +   AV     T SS       K V   + NS+   P KKR+FRMSAHED L+
Sbjct: 495 EVLAQSEKTGDAVDGTSKTGSSKDQDMRGKGVYMPLTNSLEEHPPKKRSFRMSAHEDFLE 554

Query: 583 LDGIDDAYPDGAVYSFSPLEKETTSSTVMAEKISSGTGAIAKENPSTVMPSKSFTTVDEA 642
           LD  DD    GA  +   + ++  +  V    IS   G      PS  MPS S+ +  +A
Sbjct: 555 LD--DDL---GAASTPCEVAEKQNAFEVEKSHISMPIGE-KPLTPSEAMPSTSYISNGDA 608



 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 1157 QMTMEDSMAEDTFQPAPPAATXXXXXXXXXXXXXXXXXXSNFVFGGST----PSGTSPFQ 1212
            Q++MEDSMAEDT Q     A                    NF FGG      PS  +PFQ
Sbjct: 1200 QVSMEDSMAEDTDQ-----ANRASMVAPMFGQAAVSMPQPNFAFGGGAATQPPSMANPFQ 1254

Query: 1213 FGGQ-QSIAPQNPSPFQASGSLDFNAXXX-XXXXXXXXXXXXRKILRVKHKQRKK 1265
            FGGQ  +   QN SPFQAS SL+F                  R+I + K   RKK
Sbjct: 1255 FGGQPMASTLQNASPFQASQSLEFQGGGSFSLGSTGGGDKSGRRIFKAKKSTRKK 1309


>AT5G20200.1 | Symbols:  | nucleoporin-related |
           chr5:6816776-6821620 FORWARD LENGTH=762
          Length = 762

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 131/509 (25%), Positives = 199/509 (39%), Gaps = 90/509 (17%)

Query: 13  GTGGKFRKRLFGRTKTTPYDRPPAPTPLRNPNRNNGWFSKLVVDPAHRLITHSAHSLFSS 72
           G GGK +++   R   TPY RP      R P     W S+ +VDPA+R+I+  A  +   
Sbjct: 23  GVGGKLKRQSARRHAATPYSRPTQNQVQRRP-----WISR-IVDPAYRIISGGATRILPY 76

Query: 73  LFRKRLT----------HTPHSSETQKEVQDN--------HQEEAAFVAINS-SGKQQGA 113
            F    +             H  E Q   QDN        ++ E A + +   SG     
Sbjct: 77  FFSNAASAPALAAPPEDQNQHQGELQNNPQDNDPSVTPISNKPEPASIEVGGPSGTAN-- 134

Query: 114 VGESDVQINC--------SDGSGXXXXXXXXXXXXFTRSERDQLTALMRSRTVGEP-VRE 164
           V E +  I+         +D               F+++E D+L  ++ SR +  P V+ 
Sbjct: 135 VNEGNFSISAQRRGKAALNDDVAISELERLMEGKTFSQAEIDRLIEMISSRAIDLPDVKR 194

Query: 165 EEKKTEMVPSEPFLPFREKE-------EYPKTPALENGIENHLVKTPDIFTSSV------ 211
           +E+  E       +P RE         +  K P       + +  TP     S+      
Sbjct: 195 DERNLE-------IPLREGAKKNMSLFDKAKEPIGGKDANSEIWATPTPLAKSIILDGDK 247

Query: 212 -PTEDFASPAALAKVYMGSRNSKVSSSMLGMRNPALGEDSTPLKSENLSLKSPIMSIVPR 270
              E   SPA LAK YMG + S  SS     RN     D + L  ++ SL SP  S  P 
Sbjct: 248 IRDEVGLSPAELAKAYMGGQTSSSSSQGFVARNEKDCLDRSMLVGKS-SLASP--SSKPS 304

Query: 271 ATRHA--AVHENGRVTSRSHGRS-AIYSMARTPYSRICPTSTLKGGVLAIEGGPSSSTQS 327
           A      +  ++G  T +S   S  + +  RTPYSR    S  K  ++ ++   SS   S
Sbjct: 305 ACWPGIKSSEQSGFATPQSRRESYGLQNFPRTPYSRTI-LSNSKSKLMQLQND-SSKHLS 362

Query: 328 ALDHGMLSVSKQRAVKRR--SLALDSDIGSGGPIRRVRQKSNKXXX---XXXXXXXXXFT 382
            L       S  ++V+RR   L+   D G  GP RR RQ +                 F 
Sbjct: 363 NLQ------SPSQSVERRYGQLSKGRDGGLFGPSRRTRQSATPSMVSPYSRPSRGASRFE 416

Query: 383 KSGLGIDAAQQPSSSMQKPKFLDEVKHNHMKLSEQNGYDTVPSMSLTPSRSISSETASKI 442
            S +   +    SS + + +     KH   ++    G  TVP+         SS+ A  I
Sbjct: 417 NSAIMKSSEAGESSYLSRSQITTYGKHKEAEV----GTLTVPTH--------SSQIARTI 464

Query: 443 QQQLDRLVSP--PKEKSSELRLQSAYNNP 469
              L+R  S   PK K++EL+L +++ +P
Sbjct: 465 LDHLERTQSQSTPKNKTAELKLATSWRHP 493